BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473117
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29110.1 | Symbols: | Cysteine proteinases superfamily prot... 1288 0.0
AT1G29080.1 | Symbols: | Papain family cysteine protease | chr... 344 9e-94
AT2G27420.1 | Symbols: | Cysteine proteinases superfamily prot... 75.0 1e-12
> AT1G29110.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:10171683-10173071 FORWARD LENGTH=1005
Length=1005
Score = 1288 bits (697), Expect = 0.0
Identities = 814/870 (94%), Gaps = 10/870 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTCGGTATGGTCTGTGTTGGTGGCTCTAACCATTCTTTCCATGGATCTTAGGATC 60
|||||||| ||| | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGTGTCTGTACGATCTGTGTTCGTGGCTCTAACCATTCTTTCCATGGATCTAAGGATC 60
Query 61 TCTCAAGCCAGACCTCATGTCACTTTGAACGAGCAATCCATTGTTGATTACCACCAGCAA 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 61 TCTCAAGCCAGACCTCATGTCACTTTGAACGAGCAATCAATTGTTGATTACCACCAACAA 120
Query 121 TGGATGACTCAGTTCTCTCGAGTTTACCAGGATGAATCCGAGAAAGAAATGAGACTTCAA 180
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||
Sbjct 121 TGGATGACTCAATTCTCTCGAGTTTACAAGGATGAATCCGAGAAAGAAATGAGGCTTAAA 180
Query 181 GTGTTCAAGAAAAACTTGAAATTCATTGAGAACTTCAATAATATGGGGAACCAAAGCTAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGTTCAAGAAAAACTTGAAATTCATTGAGAACTTCAATAATATGGGGAACCAAAGCTAT 240
Query 241 ACAGTTGGTGTCAACGAGTTCACGGATTGGACAATAGAAGAGTTCCTTGCCACCCACACC 300
||| ||||||||||||||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 241 ACACTTGGTGTCAACGAGTTCACGGATTGGAAAACAGAAGAGTTCCTTGCGACCCACACC 300
Query 301 GGCCTCCGCGTTAACGTAACTACACTATCCGAACTATTTAATGAAACTATGCCATCAAGG 360
||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||
Sbjct 301 GGCCTCCGCGTTAACGTAACTTCACTATCCGAACTATTTAATAAAACGAAGCCATCAAGG 360
Query 361 AATTGGAACATTAGTGATATCGACATCGACGACGAAAGCAAAGACTGGAGAGACGAAGGA 420
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 361 AATTGGAACATGAGTGATATCGACATGGAAGACGAAAGCAAAGACTGGAGAGACGAAGGA 420
Query 421 GCTGTAATACCTGTTAAAGT-TCAAGGAGCATGTGGTTTGACAAAGATATCTGGCAAAAA 479
||||||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GCTGTAACACCTGTTAAA-TATCAAGGAGCATGTCGTTTGACAAAGATATCTGGCAAAAA 479
Query 480 TCTATTAACACTGTCCGAACAGCAGCTTATAGATTGCGACACAGAGAAAAACACTGGTTG 539
||||||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||||
Sbjct 480 TCTATTAACACTGTCCGAACAACAGCTAATAGATTGCGACATAGAGAAAAACGGTGGTTG 539
Query 540 TGATGGCGGAGGAATA-GAAGAAGCTTTCAAGTACATAATAAAAAACGGAGGGGTTTCTT 598
||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 CAATGGCGGAG-AATTTGAAGAAGCTTTCAAGTACATAATAAAAAACGGAGGCGTTTCTT 598
Query 599 TAGAAACGGAATACCCTTACCAAGTGAAAAAGGGGAGCTGTCGTGCCAACGCCAGATC-C 657
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | |
Sbjct 599 TAGAAACGGAATACCCTTACCAAGTGAAAAAGGAGAGTTGTCGTGCCAACGCCAGA-CGC 657
Query 658 GCCACTCAGACACAGATTAGAGGGTT-CGAAATGGTTCCAAGCCACAACGAGCGTGCGTT 716
||| | || ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 658 GCCCCACATACACAGATTAGAGGGTTTC-AAATGGTTCCAAGCCACAACGAGCGTGCGTT 716
Query 717 GCTCGAGGCCGTAAGAAGACAGCCAGTCTCGGTGTTGATTGATGCAAGAGCGGACAGTTT 776
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 717 GCTCGAGGCCGTAAGAAGACAGCCCGTCTCGGTGTTGATTGACGCAAGAGCGGACAGTTT 776
Query 777 CAAA-ACTTACAAAGGGGGAGTATACGCTGGGCTGGACTGTGGGACAGACGTGAATCATG 835
| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 CGGTCA-TTACAAAGGGGGAGTGTACGCTGGGCTGGACTGTGGGACAGACGTGAATCATG 835
Query 836 CAGTGACGTTCGTTGGGTACGGAACGATGA 865
|||||||| |||||||||||||||||||||
Sbjct 836 CAGTGACGATCGTTGGGTACGGAACGATGA 865
Score = 171 bits (92), Expect = 2e-41
Identities = 92/92 (100%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 869 AGAGTTGGGGAGAAAATGGTTACATGAGGATCCGTAGAGATGTGGAGTGGCCTCAAGGAA 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AGAGTTGGGGAGAAAATGGTTACATGAGGATCCGTAGAGATGTGGAGTGGCCTCAAGGAA 964
Query 929 TGTGTGGTATAGCTCAGGTTGCTGCTTATCCG 960
||||||||||||||||||||||||||||||||
Sbjct 965 TGTGTGGTATAGCTCAGGTTGCTGCTTATCCG 996
> AT1G29080.1 | Symbols: | Papain family cysteine protease | chr1:10157494-10158674
REVERSE LENGTH=1041
Length=1041
Score = 344 bits (186), Expect = 9e-94
Identities = 355/435 (82%), Gaps = 18/435 (4%)
Strand=Plus/Plus
Query 30 TCTAACCAT-TCTTTCCATGGATCTTAGGATCTCTCAAGCCAGACCTCATGTCACTTTGA 88
||||||||| | ||| ||||||||| | ||||||| |||| | | ||| |||| |||||
Sbjct 30 TCTAACCATAT-TTTTCATGGATCTAAAGATCTCTGAAGCTACATCTCGTGTCGCTTTGT 88
Query 89 ACGAG-CA--ATCCATTGTTGATTACCACCAGCAATGGATGACTCAGTTCTCTCGAGTTT 145
|| || || |||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct 89 ACAAGCCATCATCCATTGTTGATTACCACCAGCAATGGATGATTCAATTTTCTCGAGTTT 148
Query 146 ACCAGGATGAATCCGAGAAAGAAATGAGACTTCAAGTGTTCAAGAAAAACTTGAAATTCA 205
| | ||||||| |||||| | |||| ||||||||| ||| | |||| ||||||||||
Sbjct 149 ATGACGATGAATTTGAGAAACAGTTGAGGCTTCAAGTGCTCACGGAAAATTTGAAATTCA 208
Query 206 TTGAGAACTTCAATAATATGGGGAACCAAAGCTACACAGTTGGTGTCAACGAGTTCACGG 265
|||||| |||||||||||||||||| |||||||||| | ||||||| ||||||||||| |
Sbjct 209 TTGAGAGCTTCAATAATATGGGGAATCAAAGCTACAAACTTGGTGTTAACGAGTTCACAG 268
Query 266 ATTGGAC-AATAGAAGAGTTCCTTGCCACCCACACCGGCCTCCG---CGTTAACGTAACT 321
||||||| || ||| ||||||||||||||| ||||||| ||| | |||||| ||||||
Sbjct 269 ATTGGACTAA-AGAGGAGTTCCTTGCCACCTACACCGGTCTCAGAGGCGTTAATGTAACT 327
Query 322 ACACTATCCGAACTATTTAATGAAACTATGCCATCAAGGAATTGGAACATTAGTGATATC 381
||| || |||| | |||||||||| | |||| | ||||||||| | | |||||| ||
Sbjct 328 TCACCATTCGAAGTGGTTAATGAAACGAAGCCAGCTTGGAATTGGACCGTCAGTGATGTC 387
Query 382 GACATCGACGACGAAAGCAAAGACTGGAGAGACGAAGGAGCTGTAATACCTGTTAAAGTT 441
| | | | ||||| |||||| |||||| |||||||||| |||| |||||| ||| |
Sbjct 388 --CTTGG-C-ACGAA--CAAAGATTGGAGAAACGAAGGAGCCGTAACACCTGTGAAA-TC 440
Query 442 C-AAGGAGCATGTGG 455
| |||||| ||||||
Sbjct 441 CCAAGGAGAATGTGG 455
> AT2G27420.1 | Symbols: | Cysteine proteinases superfamily protein
| chr2:11726144-11727614 REVERSE LENGTH=1309
Length=1309
Score = 75.0 bits (40), Expect = 1e-12
Identities = 58/66 (88%), Gaps = 4/66 (6%)
Strand=Plus/Plus
Query 873 TTGGGGAGAAAATGGTTACATGAGGATCC-GTAGAGATGTGGAGTGG-CCTCAAGGAATG 930
|||||||||||||||||||||||||||| | ||||| ||||| || || |||||||||
Sbjct 1046 TTGGGGAGAAAATGGTTACATGAGGATCAAG-AGAGACGTGGA-TGCACCCCAAGGAATG 1103
Query 931 TGTGGT 936
||||||
Sbjct 1104 TGTGGT 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5