BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473118
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29120.5 | Symbols: | Hydrolase-like protein family | chr1:... 2663 0.0
> AT1G29120.5 | Symbols: | Hydrolase-like protein family | chr1:10174187-10178521
FORWARD LENGTH=1959
Length=1959
Score = 2663 bits (1442), Expect = 0.0
Identities = 1670/1773 (94%), Gaps = 43/1773 (2%)
Strand=Plus/Plus
Query 1 GAAGATGATGATTGAATGTTTTACTATTTGGCAGTGAACGGAAGAGATAGAGAAGAGCAT 60
|||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct 86 GAAGATGATGATTGAATG--TT--TATTTGGCAGTGAATGGAAGAGATAGAGAGGAGCAT 141
Query 61 GGGTCTCTGTGAAGAAGATAACGCAGAGAGAG---GCATGTTTGATTCTGAAGCGTGACG 117
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 142 GGGTCTCTGTGAAGAAGATAACGTAGAGAGAGTTATTATGTTTGATTCTGAAGCGTGACG 201
Query 118 TCACTCAGAAACCGTGATTCAAGGATCTTTCTTCCACTCCTTTCTCTGATTTTGAC--T- 174
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 202 TCACTCAGAAACCGTGAATCAAGGATCTTTCTTCCACTCCTTTCTCTGATTTTGACTTTC 261
Query 175 T-T-CTCTCTCTATATATAAGCTCTCCACATCAATATGTCTAC-GC--CTTCTTGGATTC 229
| | ||||||||||||||||| ||| |||||||||||||||| || ||||||||||||
Sbjct 262 TCTCCTCTCTCTATATATAAG--CTCAACATCAATATGTCTACGGCTTCTTCTTGGATTC 319
Query 230 AACAACCTCCTTTTAGATACTTTCCGGATCGT---GG------TAAGCCAAGCTCTCGCA 280
|||||||||||||||||||||| ||||||||| || |||||||||||||||||
Sbjct 320 AACAACCTCCTTTTAGATACTTACCGGATCGTGGCGGTTTCTCTAAGCCAAGCTCTCGCA 379
Query 281 GAGCGCGGCAGtttttttCCGGCGTTGTTTCAGcttcttcttcttcttcttcttcGCCGT 340
| ||||||||||||| |||||||||||||||||||| | |||||||| ||||||| |
Sbjct 380 GCGCGCGGCAGTTTTCCTCCGGCGTTGTTTCAGCTTC--C-GCTTCTTCTCCTTCGCC-T 435
Query 341 CGTCTTCCTCGTGCTCTTGTGGTTATTCCGAGATTTTGAATTTTC-ATTTCGGCTCAAGC 399
|| ||||||||||| ||||||||||| ||||||||||| |||| ||||||| |||| |
Sbjct 436 --TCATCCTCGTGCTCCTGTGGTTATTCGGAGATTTTGAA-TTTCGATTTCGGGTCAAAC 492
Query 400 AGAAGCTGGAACCAACAGGGACTCAGGGTTCAAGCAATGAGTTCCACTGCCCAACGGAAT 459
|||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||
Sbjct 493 AGAAGCTGGAACCAACAGGGACGCAGGGTTCAGGCAATGAGTTCCACAGCCCAACGGAAA 552
Query 460 TTTTCGTTATCCAAAGGCGACACTGATGATAAAAATGAACCTGATCATCTTCTTGTTCTT 519
|||||| |||| ||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 553 TTTTCGCTATCGAAAGGCGACTCCGATGACAAAAATGAACCTGATCATCTTCTTGTTCTT 612
Query 520 GTACATGGTATTTTGGCCAGTCCCAGCGACTGGCTCTACGTAGAAGCTGAGCTGAAAAGA 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GTACATGGTATTTTGGCCAGTCCCAGCGACTGGCTCTACGTAGAAGCTGAGCTGAAAAGA 672
Query 580 CGCCTTGGAAGAAGATTCTTGATTTATGCAAGTTCTTCCAATACCTTCACTAAAACATTT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 CGCCTTGGAAGAAGATTCTTGATTTATGCAAGTTCTTCCAATACCTTCACTAAAACATTT 732
Query 640 GGCGGGGTCGATGGAGCTGGAAAACGACTAGCTGAAGAGGTTAGACAAGTTGTCCAAAAG 699
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 733 GGCGGGATCGATGGAGCTGGAAAACGACTAGCAGAAGAGGTTAGACAAGTTGTCCAAAAG 792
Query 700 AGCAAGAGCTTAAAGAAGATTTCTTTTTTAGCCCACTCCCTCGGTGGCTTATTTTCCAGA 759
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 793 AGCAAGAGCTTAAAGAAGATTTCGTTTTTAGCCCACTCCCTCGGTGGCTTATTTTCCAGA 852
Query 760 CATGCTGTTGCTGTTCTTTACTCAGCAGCAATGTCACAAGCAAGTGATGTTGCTGTCTCT 819
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 853 CATGCTGTTGCTGTTCTTTACTCAGCAGCAATGGCACAAGTAAGTGATGTTGCTGTCTCT 912
Query 820 AAATCTGGCGATTCACATCTTCTGCGAGGTAGGATTGCGGGGCTCGAACCGATTAATTTC 879
|||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 913 CAATCTGGCAATTCAAATCTTCTGCGAGGTAGGATTGCGGGGCTAGAACCGATTAATTTC 972
Query 880 ATCACTTTGGCAACACCTCATCTTGGAGTGAGAGGCAGAAAGCAGCTGCCTTTTCTGTTG 939
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 973 ATCACTTTGGCAACACCTCATCTAGGAGTGAGAGGCAGAAAGCAGCTGCCTTTTCTGTTG 1032
Query 940 GGAGTTCCTATTCTAGAGAAACTTGCTGCACCAATAGCTCCGTTCTTTGTTGGTCGGACT 999
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1033 GGAGTTCCTATTCTTGAGAAACTTGCTGCACCAATAGCTCCATTCTTTGTTGGTCGGACT 1092
Query 1000 GGTAGCCAGTTGTTCCTCACTGATGGTAAAGCTGATAAACCACCTCTTCTTTTGAGGATG 1059
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GGTAGTCAGTTGTTCCTCACTGATGGTAAAGCTGATAAACCACCTCTTCTTTTGAGGATG 1152
Query 1060 GCATCTGATGGTGAAGATCTGAAATTCTTATCGGCGCTAGGGGCATTTCGAAGCCGCATT 1119
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1153 GCATCTGATGGTGAAGATCTGAAATTCTTATCGGCGCTGGGGGCATTTCGAAGTCGCATT 1212
Query 1120 ATATATGCAAACGTATCTTATGACC-A--CATGGTTGGTTGGCGTACATCTTCCATAAGG 1176
||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 1213 ATATATGCAAACGTATCTTATGACCTAGACATGGTTGGTTGGCGTACATCTTCCATTAGG 1272
Query 1177 AGAGAAACTGAACTTATCAAGCCTCCACGCCGGTCTCTGGATGGATACAAGCATGTTGTT 1236
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1273 AGAGAAACTGAACTTATCAAGCCTTCACGCCGGTCTCTGGATGGATACAAGCATGTTGTT 1332
Query 1237 GATGTAGAATACTGTCCACCTGTTTCATCAGATGGTGCCCATTTCCCTCCAGAAGCTGCT 1296
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GATGTTGAATACTGTCCACCTGTTTCATCAGATGGTGCCCATTTCCCTCCAGAAGCTGCT 1392
Query 1297 AAAGCCAAGGAGGCCGCACAAAGCTCTCCTAGCCCTCAGAACACACTTGAGTATCATGAA 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 AAAGCCAAGGAGGCCGCACAAAGCTCTCCTAGCCCTCAGAACACACTTGAGTATCATGAA 1452
Query 1357 ATTGTGGAAGAGGAAATGATCCGCGGTCTGCAGAGGTTAGGGTGGAAGAAAGTTGATGTC 1416
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1453 ATTGTGGAAGAGGAAATGATCCGCGGTCTGCAGAGGTTGGGGTGGAAGAAAGTTGATGTC 1512
Query 1417 AGCTTCCACTCCACCTTCTGGCCTTACTTAGCTCATAACAACATTCACGTGAAAAGTGAA 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 AGCTTCCACTCCACCTTCTGGCCTTACTTAGCTCATAACAACATTCACGTGAAAAGTGAA 1572
Query 1477 AGACTTTACAAAGCAGGAGCTGGAGTTATTGCGCATGTTGCAGATAGTATAAAACAGCAA 1536
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1573 AGACTTTACAAAGCAGGAGCTGGAGTTATTGCACACGTTGCAGATAGTATAAAACAGCAA 1632
Query 1537 GAGTCTTCCACGTTTATTACCGCCAGCTTATAAACTGTTTGGGAGATCGGTGCAGATCAA 1596
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1633 GAGTCTTCCACGTTTATTACCGCCAGCTTATAAA-TCTTTGGGAGATCGGTGCAGATCAA 1691
Query 1597 GAACGTTCGCATCTTTGCTT-TTCT-TTTGTTGT-T-GGCGAAAACAGAGGAACTATATT 1652
||| |||||||||||||||| |||| ||| || | | ||||||| |||| ||| || | |
Sbjct 1692 GAATGTTCGCATCTTTGCTTCTTCTATTTTTTTTCTTGGCGAAATCAGAAGAAGTACAAT 1751
Query 1653 CCAATTCATCTGTACATGATTTTCTTGTAATAGCTTGCTGATGATACAACACTTGAA-GA 1711
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||
Sbjct 1752 CCAATTCATCTGTACATGATTTTCTTGTATTAGCTTGTTGATGATACAACACTTGAAAGA 1811
Query 1712 TGTTATTATAGATTCAGGTTTCTTAAAGAGAAA 1744
|||||||||||||| ||||||||||||||||||
Sbjct 1812 TGTTATTATAGATTAAGGTTTCTTAAAGAGAAA 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86244536310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5