BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473130
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29260.1 | Symbols: PEX7, ATPEX7 | peroxin 7 | chr1:10224815... 1764 0.0
> AT1G29260.1 | Symbols: PEX7, ATPEX7 | peroxin 7 | chr1:10224815-10226205
FORWARD LENGTH=1391
Length=1391
Score = 1764 bits (955), Expect = 0.0
Identities = 1079/1137 (95%), Gaps = 16/1137 (1%)
Strand=Plus/Plus
Query 1 TAATTCTGCGATGAGCAAAATCGGCGTTATCCGATCAGATCGTCGAATTGAATCTTCGAG 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TAATTCTGCGATGAGCAAAATCGGCGTTATCCGATCAGATCGTTGAATTGAATCTTCGAG 60
Query 61 AAGACTCAAAAACTCTTCCATTGATTCAATCACTCACC-G-G-AGAAGAAGAAGCTATGC 117
||||||| |||| |||||||||||||||||| | | |||||||||||||||||
Sbjct 61 AAGACTC-----TTCTT---TTGATTCAATCACTCACCGGAGAAGAAGAAGAAGCTATGC 112
Query 118 CGGTGTTCAAAGCTCCGTTCAATGGCTACTCTGTGAAATTCAGTCCATTCTACGAGTCAC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 CGGTGTTCAAAGCTCCGTTCAATGGCTACTCTGTGAAATTCAGTCCATTCTACGAGTCAC 172
Query 178 GCCTCGCCGTCGCAACAGCTCAGAACTTCGGAATTCTCGGAAACGGTCGAATCCATGTAC 237
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 173 GCCTCGCCGTCGCTACAGCTCAGAACTTCGGAATTCTCGGAAACGGCCGAATCCATGTCC 232
Query 238 TCGAGCTCGCTCCTGGAGCTCCCGGAGTAACCGAATCCGTCGCGTACGATACAGCCGACG 297
|||||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||
Sbjct 233 TCGAGCTCGCTCCTGGAGCTCCAGGCGTAACTGAATCCGTCTCGTACGATACAGCCGACG 292
Query 298 CTGTATACGACGTTTGTTGGTCGGAATCTCATGACTCTGTACTCATCGCCGCAATTGGTG 357
||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 293 CTGTATACGACGTATGTTGGTCAGAATCTCATGACTCTGTGCTCATCGCCGCAATTGGTG 352
Query 358 ACGGCTCAGTGAAGATTTACGACACAGCTCTTCCTCCTCCTTCTAATCCGATTAGATCAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ACGGCTCAGTGAAGATTTACGACACAGCTCTTCCTCCTCCTTCTAATCCGATTAGATCAT 412
Query 418 TCCAAGAGCACGCGCGTGAGGTTCAATCCT-TGGATTACAATCCCACGCGCCGTGATTCG 476
|||||||||||||||||||||||||||| | ||||||||||||||||||| || ||||||
Sbjct 413 TCCAAGAGCACGCGCGTGAGGTTCAATC-TGTGGATTACAATCCCACGCGGCGCGATTCG 471
Query 477 TTTCTCACTTCTTCCTGGGATGATACCGTGAAGCTTTGGGCTATGGATCGTCCGGCGAGT 536
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 472 TTTCTCACTTCTTCGTGGGATGATACGGTTAAGCTTTGGGCTATGGATCGTCCGGCGAGT 531
Query 537 GTTAGGACTTTTAAGGAACATGTTTATTGCGTTTATCAAGCAGTTTGGAATCCTAAACAT 596
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 532 GTAAGGACTTTTAAGGAACATGCTTATTGCGTTTATCAAGCAGTTTGGAATCCTAAACAT 591
Query 597 GGTGATGTGTTTGCTTCTGCTTCCGGAGATTGTACTGTGAGGATTTGGGATGTTAGAGAA 656
||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 592 GGTGATGTGTTTGCTTCTGCTTCTGGAGATTGTACTTTAAGGATTTGGGATGTTAGAGAA 651
Query 657 CCTGGATCAACTATGATCATCCCTGGTCATGAATATGAGATTTTGTCTTGTGATTGGAAT 716
||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct 652 CCTGGATCAACTATGATCATCCCTGCTCATGATTTTGAGATTTTGTCTTGTGATTGGAAT 711
Query 717 AAGTATGATGATTGTATTTTAGCTACTTCTTCAGTGGACAAAACGGTTAAGGTATGGGAT 776
|||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||
Sbjct 712 AAGTATGATGATTGTATTTTAGCTACTTCTTCAGTGGATAAGACAGTTAAGGTTTGGGAT 771
Query 777 GTTAGGAGTTATAGAGTTCCTTTGGCTGTGCTTAATGGTCACGGATATGCGGTGAGAAAG 836
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 772 GTTAGGAGTTATAGAGTTCCTTTGGCTGTGCTTAATGGTCATGGATATGCGGTGAGGAAG 831
Query 837 GTGAAATTCTCGCCGCATAGGAGGAGTTTGATAGCTTCTTGCTCTTATGATATGACTGTT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 832 GTGAAATTCTCGCCGCATAGGAGGAGTTTGATAGCTTCTTGCTCTTATGATATGAGTGTT 891
Query 897 TGTCTTTGGGATTATATGGTGGAAGATGCTTTGGTTGGTAGGTATGATCATCATACAGAG 956
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TGTCTTTGGGACTATATGGTGGAAGATGCTTTGGTTGGTAGGTATGATCATCATACAGAG 951
Query 957 TTTGCGGTTGGGATCGATATGAGTGTTCTTGTTGAAGGTTTAATGGCGAGCACTGGTTGG 1016
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 952 TTTGCTGTTGGGATCGATATGAGTGTTCTTGTTGAAGGTTTAATGGCGAGTACTGGTTGG 1011
Query 1017 GATGAGCTTGTTTACGTTTGGCAGCAAGGGATGGATCCTAGAGCGAGTTAAT-CATTAGT 1075
|||||||||||||| ||||||||||||||||||||||||||||| |||| || ||| |||
Sbjct 1012 GATGAGCTTGTTTATGTTTGGCAGCAAGGGATGGATCCTAGAGCCAGTTGATTCATAAGT 1071
Query 1076 ATGTTTGTAATTGCAAAACAATTTTC-TCTTTATTTGTTGTGGAATTGGTTTGGTTT 1131
| |||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 1072 AAGTTTGTGATTGCAAAACAGTTT-CATCTTTATTTGTTGTGGAATTGGTTTGGTTT 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5