BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473131
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29250.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:1... 1033 0.0
AT2G34160.1 | Symbols: | Alba DNA/RNA-binding protein | chr2:1... 462 2e-129
> AT1G29250.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:10223266-10224727
REVERSE LENGTH=723
Length=723
Score = 1033 bits (559), Expect = 0.0
Identities = 639/675 (95%), Gaps = 16/675 (2%)
Strand=Plus/Plus
Query 22 TCTCTCTTTCTCTTCAATTTCATTCG-TTTCTGAGAT-AAAGTTGAGAGAGAAATCTAAA 79
||||||| |||||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 38 TCTCTCTGTCTCTTCAATTTCATTCGTTTTCTGAGATAAAAG-TGAGAGAGAAATCTAAA 96
Query 80 TTCGAGAAGAGAAGTTTTGAGTTTTC-GAGTTAGATTCAATGGAAGAGATCACGGAAAGA 138
||||||| |||||||||| | ||||| |||||||||||||||||||||||||||||| ||
Sbjct 97 TTCGAGAGGAGAAGTTTTAATTTTTCTGAGTTAGATTCAATGGAAGAGATCACGGAAGGA 156
Query 139 GTTAACAACATGAACTTGGCCGTCGATACCCAGAAGAAGAATCGGATTCAAGTTTCCAAC 198
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 157 GTTAACAACATGAACTTGGCTGTTGATACCCAGAAGAAGAATCGGATTCAAGTTTCCAAC 216
Query 199 ACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCCAAGAGGTACATGCAGCAGTACACT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 ACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCCAAGAGGTACATGCAGCAGTACACT 276
Query 259 GATGTCGAATTGTCTGCACTAGGAATGGCCATTGCTACTGTTGTTACGGTCGCTGAGATA 318
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 277 GATGTCGAATTGTCTGCACTAGGAATGGCTATTGCCACTGTTGTTACGGTCGCTGAGATA 336
Query 319 TTGAAGAACAATGGCTTTGCTGTTGAAAAGAAGATCATGACCTCGACTGTGGATATCAAG 378
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 337 TTGAAGAACAATGGCTTTGCTGTTGAAAAGAAGATCATGACATCGACTGTGGATATCAAG 396
Query 379 GATGATTCAAGGGGTCGTCCTGTGCAGAAAGCCAAGATTGAGATCACGCTTGCCAAGTCT 438
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 397 GATGATTCAAGGGGTCGTCCTGTGCAGAAAGCTAAGATTGAGATCACGCTTGCCAAGTCT 456
Query 439 GAGAAGTTTGATGAATTAATGGCTGCAGCCAATGAAGAGAAGGAGGCTGCAGAAGCCCAA 498
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 457 GAGAAGTTTGATGAACTAATGGCTGCAGCTAATGAAGAGAAGGAGGCTGCAGAAGCCCAA 516
Query 499 GAGCAGAACTAGATTGTTTCAAGTTTTT-CTGTTCAACGATCTTATTTCTTCGTTCCCTA 557
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 517 GAGCAAAACTAGATTGTTTCAAGTTTTTTCTGTTCAACGATCTTATTTCTTCGTTCCCTA 576
Query 558 TCTCT--CTGCTTAATTTTAAGACACTTTTATTTGTTCTATTTCCTTAATTTTTGGTTCA 615
||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 577 TCTCTATCTGCTTAATTTTAAGACACTT---------CTATTTCGTTAATTTTTGGTTCA 627
Query 616 CTTTTTGATGTCACCTTGGATTGTGTCCTCTCTACCTCTGAACAATTTTATTTAAAGATC 675
|||||| || ||||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 628 CTTTTTTATTTCACCTTGGATTGTGTCCTCTGTACCTCTGAGCATTTTTATTTAAAGATC 687
Query 676 GTAGGAAGTATAAAA 690
|||||||||||||||
Sbjct 688 GTAGGAAGTATAAAA 702
> AT2G34160.1 | Symbols: | Alba DNA/RNA-binding protein | chr2:14426203-14427383
FORWARD LENGTH=636
Length=636
Score = 462 bits (250), Expect = 2e-129
Identities = 344/391 (88%), Gaps = 0/391 (0%)
Strand=Plus/Plus
Query 118 ATGGAAGAGATCACGGAAAGAGTTAACAACATGAACTTGGCCGTCGATACCCAGAAGAAG 177
|||||||||||||| || |||| |||||||||||||| ||| |||| | ||||||||
Sbjct 81 ATGGAAGAGATCACCGATGGAGTGAACAACATGAACTTAGCCACCGATTCGCAGAAGAAA 140
Query 178 AATCGGATTCAAGTTTCCAACACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCCAAG 237
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 141 AACCGGATTCAGGTTTCCAACACTAAGAAACCATTGTTCTTCTATGTCAATCTCGCCAAG 200
Query 238 AGGTACATGCAGCAGTACACTGATGTCGAATTGTCTGCACTAGGAATGGCCATTGCTACT 297
||||| ||||||||||||| |||||| ||||||||||| || || ||||||||||| |||
Sbjct 201 AGGTATATGCAGCAGTACAATGATGTTGAATTGTCTGCCCTTGGCATGGCCATTGCAACT 260
Query 298 GTTGTTACGGTCGCTGAGATATTGAAGAACAATGGCTTTGCTGTTGAAAAGAAGATCATG 357
|||||||| || |||| ||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 261 GTTGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAAGATCATG 320
Query 358 ACCTCGACTGTGGATATCAAGGATGATTCAAGGGGTCGTCCTGTGCAGAAAGCCAAGATT 417
|| || ||||| ||||| ||||||||| |||| || ||||||||||||||||| ||||||
Sbjct 321 ACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGATT 380
Query 418 GAGATCACGCTTGCCAAGTCTGAGAAGTTTGATGAATTAATGGCTGCAGCCAATGAAGAG 477
||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 381 GAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCAGCCAATGAAGAA 440
Query 478 AAGGAGGCTGCAGAAGCCCAAGAGCAGAACT 508
|| || | ||||||||| || | ||||||||
Sbjct 441 AAAGAAGATGCAGAAGCTCAGGTGCAGAACT 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5