BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473134
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29220.2 | Symbols: | transcriptional regulator family prot... 1046 0.0
AT1G29200.2 | Symbols: | O-fucosyltransferase family protein |... 121 2e-26
> AT1G29220.2 | Symbols: | transcriptional regulator family protein
| chr1:10210648-10212722 REVERSE LENGTH=1273
Length=1273
Score = 1046 bits (566), Expect = 0.0
Identities = 623/650 (96%), Gaps = 6/650 (1%)
Strand=Plus/Plus
Query 575 AGGAAGATAGATAAGTTTCTGAGTC-TGAAAAAGATGGGGAAAAGTTTCAATTCAGAAGT 633
||||| ||||||||||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 626 AGGAAAATAGATAAGTTTCTGAG-CTTGAAAAAGATGGGGAAGAGTTTCAATTCAGAAGT 684
Query 634 GAGGAATAGGAAGGAATACAGGAATCCTGACTTCCTATTGCATGCGGTGTCTTACCAAGA 693
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 685 GAGGAATAGGAAGGAATACAGGAATCCTGACTTCCTATTGCATGCTGTATCTTACCAAGA 744
Query 694 CATTGACCAGATTGGTTCGTGTTTCTGTAAAGATGTATTCGACCCCTA-TGGATATGACC 752
||||||||||||||||||||||||| ||||||||||||| || ||| | |||||||||||
Sbjct 745 CATTGACCAGATTGGTTCGTGTTTCAGTAAAGATGTATTTGATCCC-AGTGGATATGACC 803
Query 753 CAAGTGACTTCTGCGATGCAATAGAAGTTGACATGAAGCATGAGAGGGAAAGGAAGGAAC 812
||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 804 CAAGTGACTTCTGTGATGCAATAGAAATCGACATGAAGAATGAGAGGGAAAGGAAGGAAC 863
Query 813 AAGAAAGCAAGAAGAATCAAAAGCTTGACTTTGTTTCTGCTGGTACTCAACCTGGGGCGG 872
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AAGAAAGCAAGAAGAACCAGAAGCTTGACTTTGTTTCTGCTGGTACTCAACCTGGGGCGG 923
Query 873 TTTTCGCTGCTCAAAAGCCTAACATCCCCATTCCAGGTATTCCAGCTTTAGTTACTAGTG 932
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 924 TTTTCGCTGCTCAAAAGCCTAACATCCCCATTCCAGGTATTCCAGCTTTAGCTACTAGTG 983
Query 933 GATTGCCTTCCATACCAACCGAAATCGCTGCTCGGGATGGTAGACCGAACAAGAAATCCA 992
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 984 GATTGCCTTCCATACCAACCGAAATTGCTGCTCGTGATGGTAGACCGAACAAGAAATCCA 1043
Query 993 AATGGGATAAGGTTGATGGGGACGTAAAGAATCCTCCTCTAGCAGCTGGGACTCAGGATT 1052
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1044 AATGGGATAAGGTTGATGGGGACGTAAAGAATCCTCCTCTAGCAGCTGGAACTCAGGATT 1103
Query 1053 CCCTATCCTCAATCCGGTCTAATGCAGCTCTTGTATCTGCTGCAAGTGCTGGTTCTGGAT 1112
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1104 CTATATCCTCAATCCGGTCTAATGCAGCTCTTGTATCTGCTACAAGTGCTGGTTCTGGAT 1163
Query 1113 ACTCAGCTTTTGCGCAACAACGGAGACGAGAGGTGGAAGGAAGAAGATCTTCCGAGAGGA 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 ACTCAGCTTTTGCGCAACAACGGAGACGAGAGGTGGAAGGAAGAAGATCTTCCGAGAGGA 1223
Query 1173 AATTGGAGAGAAGAAGTTGAGA--CATAACCAGAACGAAGCTTTTTTATG 1220
|||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1224 AATTGGAGAGAAGAAGTTGAGAGACATAACCAGAACGAAGCTTTTCTATG 1273
Score = 765 bits (414), Expect = 0.0
Identities = 542/600 (90%), Gaps = 24/600 (4%)
Strand=Plus/Plus
Query 1 GGATCTAAGTTCGGGTTGCAATTCGATTCGGAATCAAA-CATTTTTTGAAGAACCCTAAA 59
||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1 GGATCCAAGTTCGGGTTGCAATTCGATTCAGAATCAAACCA-TTTTTGAAGAACCCTAAA 59
Query 60 AGTTCTCTTCTTCCCCCAAATTTGTATCTTGTTCTTGCAATCGGATTCGAATTCCGAAAG 119
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 60 AGTTCTCTTCTTCCCCCAAATTTGAAT-TTGTTCTTGCAATCGGATTCGAAATCCGAAAG 118
Query 120 TCATAGTCTCGAATCTT--CCTCAACAGTTCCTTATGGCTCCGAAGAAATCTGAAGGAAT 177
|| ||||||||||| || |||||||||| ||||||||||||||||| |||||||||||
Sbjct 119 TCTTAGTCTCGAAT-TTGAGCTCAACAGTTTCTTATGGCTCCGAAGAAGTCTGAAGGAAT 177
Query 178 CGCTTTACTATCGGTTTACAGTgacgaagatgacgaagagatggaagacgccgaggaaga 237
|||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 CGCTTTGCTTTCCGTTTACAGTGATGAAGATGACGAAGAGATGGAAGACGCCGAGGAAGA 237
Query 238 ggaagaagaagacgagcagcagaagaa-tcaggaagagagtgaaaaacgaattgaagaag 296
||||||||| || ||| |||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 238 GGAAGAAGAGGATGAGAAGCAGA-GAAATCAGGAAGAGAGTGAAAAAATAATTGAAGAAG 296
Query 297 atcaggtagaagaaacgaattatatggatgaagaagagagaggaagaggaggagaagaTT 356
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 ATCAGGTAGAAGAAGCGAATTATATGGATGAAGAAGAGAAAGGAAGAGGAGGAGAAGATT 356
Query 357 CTAGAACTCCGAGGTTATTAGATGCTGGTGGAGCTTCTTCTAGTGCTCACGCGACGCCTC 416
||||||| |||||| ||||||||| || ||||||||||||||||||||| | ||| ||||
Sbjct 357 CTAGAACGCCGAGGCTATTAGATGGTGTTGGAGCTTCTTCTAGTGCTCATGGGACTCCTC 416
Query 417 GTTCAATTGATAACGATGAATCGTCGAG---T------------CGAATGATTGGTGAGT 461
||||| |||||||||||||||| ||||| | ||||||||||||||||
Sbjct 417 GTTCACTTGATAACGATGAATCATCGAGACCTGATTGGAGTAATCGAATGATTGGTGAGT 476
Query 462 CTGGAGTTGCGGATGGTGAGAGAGGTGATGATGCTTCAGGGGAAAGTTGTGATACGTTAT 521
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 CTGGAGTTGCGGATGGTGAGAGAGGTGATGATGCTTCAGGGGAAAGTAGTGATACGTTAT 536
Query 522 TGGATCAGTTTCTTCCGCCACGACCGAGAGAAAAGTGCTCGGAGGAGCTGCAAAGGAAGA 581
|||||||||||||||||||| |||||||||| | |||||| |||||||||||| | ||||
Sbjct 537 TGGATCAGTTTCTTCCGCCAAGACCGAGAGAGAGGTGCTCTGAGGAGCTGCAA-GCAAGA 595
> AT1G29200.2 | Symbols: | O-fucosyltransferase family protein
| chr1:10207822-10210622 FORWARD LENGTH=2150
Length=2150
Score = 121 bits (65), Expect = 2e-26
Identities = 74/78 (95%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 1246 TAAAGAGGTTCTAGTTCAATGTTTCATAACGGGTACAAACTTAAAAGTCAATGATATACA 1305
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2150 TAAAGAGGTTCTAGTTCAATGTTTCATAACGAGTACAAACTTAAAA-TCAATGATATACA 2092
Query 1306 GTGCATTCATTCTTTTTT 1323
|| | |||||||||||||
Sbjct 2091 GTACCTTCATTCTTTTTT 2074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65110106865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5