BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473137
Length=2118
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29200.2 | Symbols: | O-fucosyltransferase family protein |... 3314 0.0
> AT1G29200.2 | Symbols: | O-fucosyltransferase family protein
| chr1:10207822-10210622 FORWARD LENGTH=2150
Length=2150
Score = 3314 bits (1794), Expect = 0.0
Identities = 2039/2152 (95%), Gaps = 37/2152 (2%)
Strand=Plus/Plus
Query 1 ACTTAGAATTAATTTGTTCTGTCTGGATTTCTCCACACTTTTTTCACCAATTGTCATATT 60
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 ACTTAGAATTAATTTGTTCTGTCGGGATTCCTCCACACTTTTTTCACCAATTGTCATATT 60
Query 61 TTATTGTTGAATATTTTGGTTCCATCAATTTCTTAATTGCTTCCCTTACATCGAGAGAGT 120
||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct 61 TTATTGTTGAATATTTTGGTTCCATCAATCTCTTAATTGCTTGCCATACATCGAGAGAG- 119
Query 121 TTCTTGATTAATTTTGCATTTCGT-AATAGTTTATGAGCT-------------GA--ATT 164
||||||||| |||||||||||| | ||||||||||||||| || |||
Sbjct 120 TTCTTGATTCATTTTGCATTTCCTAAATAGTTTATGAGCTGAGAGAAGAGACAGATCATT 179
Query 165 AATGGGGAAACAAGGATCACCGAGAAGTCCTCGACCCGAAAATATAGATAAAGAAGAGAA 224
|||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 180 AATGGGGAAACAGGGATCACCGAGAAGTCCTCGACCTGAAACCATAGATAAAGAAGAGAA 239
Query 225 AGTTGGGAGGAGAAGTTTGGATTCTTTATCTGGAAATGATCTCTTACTCGGTAGAAAAAT 284
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 240 ATTTGGGAGGAGAAGTTTGGATTCTTTATCTGGTAATGATCTCTTACTCGGTAGAAGAAT 299
Query 285 ATATGGAAGTGAAGTTTCCAAGGCTCAAGGATCTAAGCATGATCAAAGCTGTGTTAGTAG 344
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 300 ATATGCAAGTGAAGTTTCCAAGGCTCAAGGATCTAAGCATGATCAAAGCAGTGGTAGTAG 359
Query 345 CAACAAGTTTTGGAAGAAGCAACAGTCATGGCTTCGTAGGAACTTCAAGTCGATAGTTTT 404
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 360 CAACAAATTTTGGAAGAAGCAACATTCATGGCTTCGTAGGAACTTTAAGTCGATAGTTTT 419
Query 405 GATGATCTCAGTCACCGGTTTCATTTTCTGCATCGATTCAATCATGGTTTCGATCTTTCA 464
|||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||
Sbjct 420 GATGATCTCAGTCACCGGTTTCATTTTCTGTATGGATTCCATTATGGTTTCGATCTTTCA 479
Query 465 TTCTGATAGTAGCGCCATGGTTCAAGACATTTCAAGGTTGAGCAATATGACTTTGCATAA 524
||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCCGATAGTAGAGCCGTGGTGCAAGACATTTCAAGGTTGAGCAATATGACTTTGCATAA 539
Query 525 GAATGGAGCTCAAGATGCTTCACCAGTGCAAATGTATAGCCGTCTTCTAAACTTAGCTTC 584
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GAATGGAGCAGTAGATGCTTCACCAGTTCAAATGTATAGCCGTCTTCTAAACTTAGCTTC 599
Query 585 GGATTCTCTTGCAAAGAATGAATTCAAACCCGATACACCAAATTTCCAAGAGGAAAGATC 644
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 600 GGATTCTCTTGCAAAGAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATC 659
Query 645 TTCAAAGTCACCGCAGTGGAAGCCTTGTGCAGATAATAACAAAGCAGCTGTGGCATTAGA 704
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTCAAAGTCATCACAGTGGAAGCCTTGTGCAGATAATAACAAAGCAGCTGTGGCATTAGA 719
Query 705 GAGGTATAGAGAATTAAGCAATGGTTACATAATGGTTAGTGCAAATGGTGGCCTTAATCA 764
||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 720 GAGGTCTAGAGAATTAAGCAATGGTTACATCATGGTTAGTGCAAATGGAGGCCTTAATCA 779
Query 765 ACAGCGTGTGGCTATCTGTAACGCTGTTGCGGTTGCTGCTCTGCTCAACGCGACTCTAGT 824
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACAGCGCGTGGCTATCTGTAACGCTGTTGCGGTTGCTGCTCTGCTCAACGCGACTCTAGT 839
Query 825 TCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGCCAATTTGGTGATATATA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGCCAATTTGGTGATATATA 899
Query 885 CCAAGAGGATCGTTTTATAGAGTATCTGAAAGATGAGGTGCATATAGTGAAGGATCTTCC 944
||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 900 CCAAGAGGATCATTTTATCGAGTATCTGAAAGATGAGGTGAATATAGTGAAGAATCTTCC 959
Query 945 TCAACATCTAAAATCTACTGATAACAAGAATCTTAGCTTGGTTACTGATACAGAGCTTGT 1004
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 960 TCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGGTTACTGATACGGAGCTTGT 1019
Query 1005 AAAAGAGGCAA-AGCCAGTCGATTACATCGAACGTGTTCTTCCTTTGTTAAAGAAGTATG 1063
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 AAAAGAGGCAACA-CCAGTCGATTACATCGAACATGTTCTTCCTTTGTTAAAGAAGTATG 1078
Query 1064 GAATGGTTCATCTTTTTGGATACGGGAATCGCCTCGGATTTGATCCATTGCCTTTTGATG 1123
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1079 GAATGGTTCATCTTTTCGGATACGGGAATCGCCTCGGGTTTGATCCATTGCCTTTTGACG 1138
Query 1124 TTCAGAGATTACGATGTAAATGCAACTTTCACGCGCTGAAATTCGTGCCAAAGATTCAAG 1183
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1139 TTCAGAGATTACGATGTAAATGCAACTTTCACGCGCTGAAATTCGCGCCCAAGATTCAAG 1198
Query 1184 AAGCAGGATCTCTATTGGTGAAACGGATAAGAAGATTCAAAACATCGCGTAGCATATTGG 1243
|||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1199 AAGCGGGATCTCTGTTGGTGAAACGGATAAGAAGATTCAAAACATCGCGTAGCAGATTGG 1258
Query 1244 AAGAAGCATTGCTTGGTGAATCCATGGTGAAAAATACTGTTAAAGGAGAAGAAGAACCGT 1303
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1259 AAGAAGCATTACTTGGTGAATCCATGGTGAAAAGTACTGTTAAAGGAGAAGAAGAACCGT 1318
Query 1304 TGAAGTATCTTGCTTTGCATCTAAGGTTTGAAGAAGACATGGTTGCTTATTCTCTATGCA 1363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGAAGTATCTTGCTTTGCATCTAAGGTTTGAAGAAGACATGGTTGCTTATTCTCTATGCG 1378
Query 1364 ATTTTGGAGGAGGAGAAACTGAGCGTAAAGAGCTTCAAGAGTACCGTGAAGATCATTTCC 1423
||||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||
Sbjct 1379 ATTTTGGAGGAGGAGAAGCCGAGCGCAAAGAGCTTCAAGCTTACCGTGAAGATCATTTCC 1438
Query 1424 CTCTTCTACTCAAACGTTTGAAGAAATCAAAGTCAGTGTCCCCAGAAGAGTTAAGAAAAA 1483
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1439 CTCTTCTACTCAAACGTTTGAAGAAATCAAAGCCAGTGTCCCCAGAAGAGTTAAGAAAAA 1498
Query 1484 CGGGCAAGTGTCCACTAACACCAGAGGAAGCAACTCTGGTTCTTGCTGGTCTTGGATTCA 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CGGGCAAGTGTCCACTAACACCAGAGGAAGCAACTCTGGTTCTTGCTGGTCTTGGATTCA 1558
Query 1544 AGAGAAAAACATATATTTACTTAGCTGGATCTCAAATCTATGGAGGCTCTTCTCGTATGC 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AGAGAAAAACATATATTTACTTAGCTGGATCTCAAATCTATGGAGGCTCTTCTCGTATGC 1618
Query 1604 TTTCTTTAACAAGACTGTACCCGAATATCGCGACCAAAGAAACTCTCCTTACACCTCAAG 1663
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TTCCTTTAACAAGACTGTACCCGAATATCGCGACCAAAGAAACTCTCCTTACACCTCAAG 1678
Query 1664 AACTTGCGCCATTCAAGAACTTCTCTTCTCAGCTAGCTGCACTAGATTTCATAGCTTGTA 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 AACTTGCGCCATTCAAGAACTTCTCTTCTCAGCTAGCTGCACTAGATTTCATAGCTTGTA 1738
Query 1724 TAGCATCAGATGTGTTTGCAATGACTGATTCTGGGAGTCAACTATCGTCCTTAGTGTCTG 1783
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1739 TAGCATCAGATGTCTTTGCAATGACTGATTCTGGGAGTCAACTATCATCCTTAGTGTCTG 1798
Query 1784 GATTTAGAACCTACTACGGAAACGGTCAGGCACCAACATTGAGACCTAACAAGAAGAGGC 1843
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 GATTTAGAAACTACTACGGAAACGGTCAGGCACCAACATTGAGACCTAACAAGAAGAGGC 1858
Query 1844 TTGCAGCAATCTTATCAGACAGTGAAACAATAAAGTGGAAGATTTTTGAAGATCGCGTGA 1903
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1859 TTGCAGCAATCTTATCAGACAGTGAAACAATAAAGTGGAAGATTTTTGAAGATCGTGTGA 1918
Query 1904 GAAAAATGGTAGAGGAAGGCCAAAAGCTTCGTACTAGGCCTTATGGACGCAGCATTTATA 1963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GAAAAATGGTAGAGGAAGGCCAAAAGCTTCGTACTAGGCCTTATGGACGCAGCATTTATA 1978
Query 1964 GACAGCCGAGATGTCCTGAGTGTATGTGTAAATTTTGATCCTTGAAAGTACAACAATAGT 2023
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1979 GACAACCGAGATGTCCTGAGTGTATGTGTAAATTTTGATCCTTGAAAGTAAAACAATAGT 2038
Query 2024 GTCTGCTCTGAAATTTTT-A--A------A--A-AA-----GAATGAATGCACTGTATAT 2066
||||| |||||||||||| | | | | || ||||||| | |||||||||
Sbjct 2039 GTCTGGTCTGAAATTTTTGATTACCCGTTAGTACAAAAAAAGAATGAAGGTACTGTATAT 2098
Query 2067 CATTGACTTTTAAGTTTGTACCCGTTATGAAACATTGAACTAGAACCTCTTT 2118
|||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2099 CATTGA-TTTTAAGTTTGTACTCGTTATGAAACATTGAACTAGAACCTCTTT 2149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105019540140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5