BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473139
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29290.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 678 0.0
> AT1G29290.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 18 Blast hits to 18
proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:10244966-10245572 FORWARD LENGTH=607
Length=607
Score = 678 bits (367), Expect = 0.0
Identities = 497/556 (89%), Gaps = 24/556 (4%)
Strand=Plus/Plus
Query 42 TCTCACCCCAAAGATCAAAGCTCTTCATGGCCGTTCGTCTAGTTCCGACCATCTGGCTCT 101
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 64 TCTCAACCCAAAGATCAAAGCTCTTCATGGCCGTTCGTCTAATTCCGACCATCTGGCTCT 123
Query 102 TCATAGTCTTCGCCATCATCGTCTCAGCCTTGCCCTCGCCGGTTTCTTCAAGAAAGA-TG 160
|||||||||| ||| ||||||| ||||||||||| |||| ||| ||||||||||| | ||
Sbjct 124 TCATAGTCTTTGCCGTCATCGTGTCAGCCTTGCCTTCGCTGGTATCTTCAAGAAA-ACTG 182
Query 161 TTGGAGATCAAGAAACAAGAAATCTTGACGGTGCGAGAGGAAGATAAGAGTCACATGCCT 220
|||||| | ||||||||||||| |||||||||| |||||||||| |||||||||||||||
Sbjct 183 TTGGAGGTGAAGAAACAAGAAAACTTGACGGTGAGAGAGGAAGAGAAGAGTCACATGCCT 242
Query 221 CACGTGACCAAAACTAGTACCTTAAGTGCTCTACCAAAGGGTAAAATTCCCAACTCAACG 280
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 243 CATGTGACCAAAACTAGTACGTTAAGTGCTCTACCAAAGGGGAAAATTCCCAACTCGACA 302
Query 281 CCGAGCAAAAAGGGTCACGCCGCCGTCTTCGCCGGAAAGCTCCGATCTCGACATCTCTCC 340
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 303 CCGAGCAAAAAGGGTCACGCGGCCGTCTTCGCCGGAAAGCTCCGATCACGACATCTCTCC 362
Query 341 ACCGTTGATCGGTTTCTCCGATCCGTTCCTAGTCCCGGTGTTGGCCACTGATAGGATCCG 400
||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 363 ACCGTTGATCGGTATCTCCGATCCGTTCCTAGTCCCGGTGTTGGCCATTGATAGTCTCGG 422
Query 401 CTAGATTCATATTTCttttttgtttttttttttCTTCCATTTAGTACATTCTTTTATTCT 460
|||||||||||| | | |||| ||| ||||||||||||||||||||| |||||
Sbjct 423 CTAGATTCATATATATATTTT-TTT--------CTTCCATTTAGTACATTCTTT-ATTCT 472
Query 461 AA-T-TATAATACGAAATTTCCTACAAGGTATACCTTTGGCTTT-G--TT-TTTAGAATT 514
|| | |||||||||||||||||||||||||||||||||| ||| | || ||| ||
Sbjct 473 AACTATATAATACGAAATTTCCTACAAGGTATACCTTTGTTTTTAGAATTCTTT----TT 528
Query 515 ATTTTTTCAGGTTACTACAA-TTATACTTATGTAAATTAGTCAAAAGTTTATTGTCTTCC 573
||||||||||||||||||| || | | ||||||||||||||||||||||||| ||||||
Sbjct 529 -TTTTTTCAGGTTACTACAACTTTTGCATATGTAAATTAGTCAAAAGTTTATTTTCTTCC 587
Query 574 ATATCACCCGAGGTTT 589
||||||| ||||||||
Sbjct 588 ATATCACACGAGGTTT 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5