BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473141
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29310.1 | Symbols: | SecY protein transport family protein... 2734 0.0
AT2G34250.1 | Symbols: | SecY protein transport family protein... 1749 0.0
> AT1G29310.1 | Symbols: | SecY protein transport family protein
| chr1:10252294-10254690 FORWARD LENGTH=1700
Length=1700
Score = 2734 bits (1480), Expect = 0.0
Identities = 1616/1682 (96%), Gaps = 7/1682 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaaaaaaaCTTTGAATCCGTTTGTTGTCTTCTTCGTC-ACGTTCTCTCT 59
|||||||| |||||||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct 24 AAAAAAAACAAAAAAAAAACTTTGAATCCGTTTGTTG-CTTCTTCG-CAACGTTCTCTCT 81
Query 60 CAAACTCGCTGAGAAACAGATTCGATAATGGGAGGAGGATTTAGAGTTTTGCATTTGGTT 119
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 CAAACTCGCAGAGTAACAGATTCGATAATGGGAGGAGGATTTAGAGTTTTGCATTTGGTG 141
Query 120 AGGCCATTCTTGGCTTTTCTTCCAGAAGTTCAAAGTGCTGATAGGAAGATTCCATTTAGA 179
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 142 AGGCCATTCTTGGCTTTTCTTCCAGAAGTGCAAAGTGCTGACAGGAAGATTCCATTTAGA 201
Query 180 GAGAAAGTGATCTACACTGTCATTTCTCTCTTCATTTTCCTTGTCTGTAGTCAGCTTCCT 239
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 202 GAGAAAGTGATCTACACTGTCATCTCCCTCTTCATTTTCCTTGTTTGTAGTCAGCTTCCT 261
Query 240 CTATATGGGATTCATTCCACGACTGGTGCTGATCCATTCTATTGGATGCGTGTCATTCTC 299
|| |||||||| ||||| || || ||||||||||| ||||||||||||||||||||||||
Sbjct 262 CTCTATGGGATCCATTCTACCACCGGTGCTGATCCGTTCTATTGGATGCGTGTCATTCTC 321
Query 300 GCTTCGAACCGTGGGACGGTGATGGAGCTCGGTATTACTCCTATTGTTACGTCTGGACTT 359
|| ||||| ||||| |||||||||||||| ||||||||||||||||| || |||||| ||
Sbjct 322 GCATCGAATCGTGGAACGGTGATGGAGCTTGGTATTACTCCTATTGTCACATCTGGA-TT 380
Query 360 -GTGATGCAACTCTTAGCAGGTTCAAAGATTATTGAGGTTGACAACAATGTCCGTGAGGA 418
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 381 AGTGATGCAACTCTTAGCAGGGTCAAAGATTATTGAGGTTGACAACAATGTTCGTGAGGA 440
Query 419 TCGTGCTCTCTTGAATGGTGCTCAGAAGCTTCTTGGGATTCTGATTGCTATTGGTGAGGC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TCGTGCTCTCTTGAATGGTGCTCAGAAGCTTCTTGGGATTCTGATTGCTATTGGTGAGGC 500
Query 479 TGTTGCGTATGTTCTTTCGGGAATGTACGGTCCTGTTGGTCAGCTCGGTGTTGGAAATGC 538
|||||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 501 TGTTGCATATGTTCTTTCGGGAATGTATGGTCCTGTTGGTCAACTTGGTGTTGGAAATGC 560
Query 539 TATTCTGATCATCCTCCAGCTTTTCTTTGCCGGAATTATCGTTATCTGTCTTGACGAGCT 598
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 561 TATTCTGATCATCCTCCAGCTTTTCTTTGCTGGAATCATCGTTATCTGTCTTGACGAGCT 620
Query 599 TCTTCAGAAGGGATATGGTCTTGGCTCTGGGATCTCTCTATTCATAGCAACTAATATCTG 658
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 621 TCTTCAGAAGGGATATGGTCTTGGCTCTGGAATCTCTCTTTTCATAGCAACCAATATCTG 680
Query 659 TGAAAGCATTATCTGGAAAGCATTTAGCCCCACAACAATCAACACCGGTCGTGGAGCTGA 718
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 681 TGAAAGCATTATCTGGAAAGCATTTAGCCCCACGACAATCAACACTGGTCGTGGAGCTGA 740
Query 719 GTTTGAAGGCGCTGTGATCGCGTTGTTCCATATGCTGATAACTAAGTCCAATAAGGTTGC 778
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTTTGAAGGCGCTGTGATTGCGTTGTTCCATATGCTGATAACTAAGTCCAATAAGGTTGC 800
Query 779 TGCGCTCAGACAAGCTTTTTACCGGCAGAACCTTCCAAATGTTACCAACTTGCTTGCAAC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TGCGCTCAGACAAGCTTTTTACCGGCAGAACCTTCCAAATGTTACCAACTTGCTTGCAAC 860
Query 839 AGTCTTGATCTTCTTGATTGTTATCTACTTCCAAGGCTTCCGTGTTGTGTTGCCCGTGAG 898
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 861 AGTGTTGATCTTCTTGATTGTTATATACTTCCAAGGCTTCCGTGTTGTGTTGCCCGTGAG 920
Query 899 GTCAAAGAGTGCTCGTGGCCAACAGGGTTCTTACCCGATCAAGCTGTTCTACACCTCCAA 958
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 921 GTCAAAGAGTGCTCGTGGCCAACAGGGTTCATACCCGATCAAGCTGTTCTACACCTCCAA 980
Query 959 CATGCCAATCATTCTCCAGTCTGCTCTCGTCTCAAACCTCTACTTCATCTCTCAGCTTCT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CATGCCAATCATTCTCCAGTCTGCTCTCGTCTCAAACCTCTACTTCATCTCTCAGCTTCT 1040
Query 1019 CTACAGGAAGTTCAGTGGAAATTTCTTTGTAAACCTATTGGGACAGTGGAAAGAATCAGA 1078
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1041 CTACAGGAAATTCAGTGGAAATTTCTTTGTGAACCTATTGGGACAGTGGAAAGAATCAGA 1100
Query 1079 GTACAGTGGACAATCTATACCAGTTAGTGGTCTTGCATACTTAATCACAGCTCCGGCAAG 1138
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1101 GTACAGTGGACAATCTATACCAGTTAGTGGTCTTGCATATTTGATCACAGCTCCGGCAAG 1160
Query 1139 TTTTGCCGATATGGCAGCTCATCCATTCCATGCGCTGTTCTATATCGTCTTCATGCTCAC 1198
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1161 TTTTGCCGATATGGCAGCTCATCCATTCCATGCTCTGTTCTATATCGTCTTCATGCTCAC 1220
Query 1199 TGCTTGCGCCCTATTCTCAAAGACCTGGATTGAAGTCTCCGGGTCTTCTGCTAGAGATGT 1258
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1221 TGCTTGTGCCCTATTCTCAAAAACATGGATTGAAGTCTCCGGGTCTTCTGCTAGAGATGT 1280
Query 1259 AGCTAAGCAGCTCAAGGAACAACAAATGGTGATGCCGGGACACAGAGAGTCTAACTTACA 1318
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1281 AGCTAAGCAGCTAAAGGAACAACAAATGGTGATGCCGGGACACAGAGAGTCCAACTTACA 1340
Query 1319 GAAGGAGCTGAACCGGTACATCCCAACAGCAGCTGCATTTGGAGGAGTGTGCATTGGTGC 1378
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1341 AAAGGAGCTGAACCGGTACATCCCAACAGCGGCTGCATTTGGAGGAGTGTGCATCGGTGC 1400
Query 1379 GCTCACTGTTTTGGCTGATTTCATGGGAGCAATTGGGTCAGGGACTGGAATCTTACTTGC 1438
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1401 GCTCACTGTTTTGGCTGATTTCATGGGAGCCATTGGGTCGGGGACTGGAATCTTACTTGC 1460
Query 1439 AGTCACAATCATATATCAGTATTTTGAAACCTTTGAGAAGGAAAAAGCCAGCGAGCTTGG 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 AGTCACAATCATATATCAGTATTTTGAAACCTTTGAGAAGGAAAAAGCCAGCGAGCTTGG 1520
Query 1499 CTTCTTTGGATTCTGATTGTTTCTAGTCATATAAAGAGGTAAATTTTTGCTAAGACTAGT 1558
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1521 TTTCTTTGGATTCTGATTGTTTCTAGTCATATAAAGGGGTAAATTTT-GCTAAGACTAGT 1579
Query 1559 GAGAAATTTGAAAGCCTAATTAAGAAGTAGCTTTCATCTTCTGTGTTCACTCGAAGGTTC 1618
||||||||||||||||||||||||||||||||||| |||| |||||||| || |||||||
Sbjct 1580 GAGAAATTTGAAAGCCTAATTAAGAAGTAGCTTTCCTCTTATGTGTTCATTCAAAGGTTC 1639
Query 1619 AATAGACGATTAAAAAGAGCATTTTGGTAGACACTTTTTGATTAACCAACAGATTTTTCT 1678
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 AATAGACGATTAAAA-GAGCATTTTGGTAGACACTTTTTGATTAACCAACAGATTTTTCT 1698
Query 1679 CT 1680
||
Sbjct 1699 CT 1700
> AT2G34250.1 | Symbols: | SecY protein transport family protein
| chr2:14462059-14464862 FORWARD LENGTH=1912
Length=1912
Score = 1749 bits (947), Expect = 0.0
Identities = 1272/1432 (89%), Gaps = 10/1432 (1%)
Strand=Plus/Plus
Query 86 AATGGGAGGAGGATTTAGAGTTTTGCATTTGGTTAGGCCATTCTTGGCTTTTCTTCCAGA 145
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 194 AATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTCTTGGCTTTTCTGCCTGA 253
Query 146 AGTTCAAAGTGCTGATAGGAAGATTCCATTTAGAGAGAAAGTGATCTACACTGTCATTTC 205
||||| ||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct 254 GGTTCAGAGTGCTGATAGGAAGGTTCCATTCAGAGAGAAGGTTATCTACACTGTCATCTC 313
Query 206 TCTCTTCAT-TTTCCTTGTCTGTAGTCAGCTTCCTCTATATGGGATTCATTCCACGACTG 264
||||||||| |||| ||||||| |||||||||||||| ||||| || |||||||| || |
Sbjct 314 TCTCTTCATCTTTC-TTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCACCACCG 372
Query 265 GTGCTGATCCATTCTATTGGATGCGTGTCATTCTCGCTTCGAACCGTGGGACGGTGATGG 324
|||| ||||||||||||||||||||||||||||| || || |||||||| || || ||||
Sbjct 373 GTGCGGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGTCATGG 432
Query 325 AGCTCGGTATTACTCCTATTGTTACGTCTGGACTTGTGATGCAACTCTTAGCAGGTTCAA 384
||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |
Sbjct 433 AGCTCGGTATTACTCCTATTGTTACATCTGGACTTGTGATGCAACTCTTGGCTGGTTCCA 492
Query 385 AGATTATTGAGGTTGACAACAATGTCCGTGAGGATCGTGCTCTCTTGAATGGTGCTCAGA 444
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 493 AGATTATTGAGGTTGACAACAATGTTCGTGAGGATCGTGCCCTCTTGAATGGTGCTCAGA 552
Query 445 AGCTTCTTGGGATTCTGATTGCTATTGGTGAGGCTGTTGCGTATGTTCTTTCGGGAATGT 504
||||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 553 AGCTTCTAGGTATTCTGATTGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGGAATGT 612
Query 505 ACGGTCCTGTTGGTCAGCTCGGTGTTGGAAATGCTATTCTGATCATCCTCCAGCTTTTCT 564
| ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 613 ATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTTCAGCTTTTCT 672
Query 565 TTGCCGGAATTATCGTTATCTGTCTTGACGAGCTTCTTCAGAAGGGATATGGTCTTGGCT 624
|||| ||||| || |||||||| ||||| || || |||||||||||||||||||| || |
Sbjct 673 TTGCTGGAATCATTGTTATCTGCCTTGATGAACTCCTTCAGAAGGGATATGGTCTCGGAT 732
Query 625 CTGGGATCTCTCTATTCATAGCAACTAATATCTGTGAAAGCATTATCTGGAAAGCATTTA 684
| || ||||| || ||||| || || || || |||||||||||||||||||| |||||||
Sbjct 733 CAGGAATCTCCCTTTTCATTGCCACCAACATTTGTGAAAGCATTATCTGGAAGGCATTTA 792
Query 685 GCCCCACAACAATCAACACCGGTCGTGGAGCTGAGTTTGAAGGCGCTGTGATCGCGTTGT 744
|||| || || ||||||||||| |||||||||||||||||||| ||||| || || |||
Sbjct 793 GCCCAACTACCATCAACACCGGGCGTGGAGCTGAGTTTGAAGGTGCTGTTATTGCACTGT 852
Query 745 TCCATATGCTGATAACTAAGTCCAATAAGGTTGCTGCGCTCAGACAAGCTTTTTACCGGC 804
|||||||||||||||| |||||||| |||||||| || ||| | |||||||| |||||||
Sbjct 853 TCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTACCGGC 912
Query 805 AGAACCTTCCAAATGTTACCAACTTGCTTGCAACAGTCTTGATCTTCTTGATTGTTATCT 864
| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||
Sbjct 913 AAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGTGATCT 972
Query 865 ACTTCCAAGGCTTCCGTGTTGTGTTGCCCGTGAGGTCAAAGAGTGCTCGTGGCCAACAGG 924
|||||||||| |||||||| || ||||| ||||| ||||||| ||| ||||| |||||||
Sbjct 973 ACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAACAGG 1032
Query 925 GTTCTTACCCGATCAAGCTGTTCTACACCTCCAACATGCCAATCATTCTCCAGTCTGCTC 984
|||||||||| |||||||||||||||||||| |||||||| ||||| ||||| || || |
Sbjct 1033 GTTCTTACCCAATCAAGCTGTTCTACACCTCTAACATGCCCATCATCCTCCAATCCGCCC 1092
Query 985 TCGTCTCAAACCTCTACTTCATCTCTCAGCTTCTCTACAGGAAGTTCAGTGGAAATTTCT 1044
|||||||||| || |||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct 1093 TCGTCTCAAATCTTTACTTCATTTCTCAGCTTCTCTACCGGAAGTTCAGCGGAAATTTCT 1152
Query 1045 TTGTAAACCTATTGGGACAGTGGAAAGAATCAGAGTACAGTGGACAATCTATACCAGTTA 1104
|||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1153 TTGTAAACCTTTTGGGACAATGGAAAGAATCTGAGTACAGTGGACAATCTATTCCAGTTA 1212
Query 1105 GTGGTCTTGCATACTTAATCACAGCTCCGGCAAGTTT-TGCCGATATGGCAGCTCATCCA 1163
||||||| || ||| | ||||||||||| |||||||| | | || ||||||||||| ||
Sbjct 1213 GTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGTTTCT-CTGACATGGCAGCTCACCCG 1271
Query 1164 TTCCATGCGCTGTTCTATATCGTCTTCATGCTCACTGCTTGCGCCCTATTCTCAAAGACC 1223
|||||||| |||||||| ||||||||||||||||||||||| || || |||||||||||
Sbjct 1272 TTCCATGCACTGTTCTACATCGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAAGACA 1331
Query 1224 TGGATTGAAGTCTCCGGGTCTTCTGCTAGAGATGTAGCTAAGCAGCTCAAGGAACAACAA 1283
|||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1332 TGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACAACAA 1391
Query 1284 ATGGTGATGCCGGGACACAGAGAGTCTAACTTACAGAAGGAGCTGAACCGGTACATCCCA 1343
||||||||||| ||||||||||| || |||||||||||||| |||||| | |||||||||
Sbjct 1392 ATGGTGATGCCAGGACACAGAGAATCAAACTTACAGAAGGAACTGAACAGATACATCCCA 1451
Query 1344 ACAGCAGCTGCATTTGGAGGAGTGTGCATTGGTGCGCTCACTGTTTTGGCTGATTTCATG 1403
|||||||| || ||||||||||| || || ||||| || || ||||||||||||||||||
Sbjct 1452 ACAGCAGCAGCTTTTGGAGGAGTTTGTATCGGTGCACTTACCGTTTTGGCTGATTTCATG 1511
Query 1404 GGAGCAATTGGGTCAGGGA-CTGGAAT-CTTACTTG-CAGTCACAATCATATATCAGTAT 1460
||||| || ||||| |||| | ||||| || ||| | ||||| |||||||| ||||||
Sbjct 1512 GGAGCCATCGGGTC-GGGAACCGGAATTCTG--TTGGCGGTCACGATCATATACCAGTAT 1568
Query 1461 TTTGAAACCTTTGAGAAGGAAAAAGCCAGCGAGCTTGGCTTCTTTGGATTCT 1512
|| || ||||||||||||||||||||||| || || |||||||| || ||||
Sbjct 1569 TTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAACTCGGCTTCTTCGGGTTCT 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5