BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473143
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29330.1 | Symbols: ATERD2, AERD2, ERD2 | ER lumen protein r... 1664 0.0
AT1G29320.1 | Symbols: | Transducin/WD40 repeat-like superfami... 158 1e-37
> AT1G29330.1 | Symbols: ATERD2, AERD2, ERD2 | ER lumen protein
retaining receptor family protein | chr1:10258248-10261112
REVERSE LENGTH=1186
Length=1186
Score = 1664 bits (901), Expect = 0.0
Identities = 1105/1195 (92%), Gaps = 47/1195 (4%)
Strand=Plus/Plus
Query 1 GTTCCAGATTGCCACGTCATCGTCTCCTCGGAACGAATTTCTGCAAAACCTGAAAC--G- 57
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
Sbjct 1 GTTCCAGATTGCCACGTCATCGTCTCCTCTCAACGAGTTTCTGCAAAACCTGAAACGTGC 60
Query 58 TGCA-ctct-ctctttctcgctcctctcttcattcgtttctctctcGATTTGAAGAGAGA 115
|||| || | | || ||| || |||||||| |||||||||||||||||||||||||||
Sbjct 61 TGCACCT-TGC-CTCTCTTTCT-CTCTCTTCCTTCGTTTCTCTCTCGATTTGAAGAGAG- 116
Query 116 AAAAATTCGTTCGATTTCGtttt-t-ttC--C----------T---GGAAAATTTTGGAA 158
|||||||||||||||||||||| | ||| | | ||||||||||||||
Sbjct 117 -AAAATTCGTTCGATTTCGTTTTCTCTTCTTCTTTTGGATTTTCCCGGAAAATTTTGGAA 175
Query 159 TCGTTGTTGAGTCTCTACCGTGTT-GTGGTCAACCATGAATATCTTTAGATTTGCTGGCG 217
||| | |||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 176 TCG--G-TGAGTCTCTATCG-ATTACTGGTCAACCATGAATATCTTTAGATTTGCTGGCG 231
Query 218 ATATGAGTCACTTGATCAGTGTCTTAATCCTTCTTCTCAAAATCTACGCGACGAAATCTT 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATATGAGTCACTTGATCAGTGTCTTAATCCTTCTTCTCAAAATCTACGCGACGAAATCTT 291
Query 278 GCGCTGGAATTTCTCTCAAGACTCAAGAGCTATATGCGCTTGTGTTCTTGACTCGGTACT 337
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 292 GCGCTGGAATCTCTCTCAAGACTCAAGAGCTCTATGCGCTTGTGTTCTTGACTCGGTACT 351
Query 338 TGGATCTGTTTACGGATTATGTATCTCTGTACAACAGCGTGATGAAGATTGTCTTCATTG 397
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 352 TGGATCTGTTTACGGATTATGTATCTCTGTACAACAGCATCATGAAGATTGTCTTCATTG 411
Query 398 CTAGCTCTTTGGCTATCGTTTGGTGTATGCGTAGGCATCCACTAGTGAGGAGGTCATACG 457
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 412 CCAGCTCTTTGGCTATCGTTTGGTGTATGCGTAGGCATCCACTTGTGAGGAGGTCATACG 471
Query 458 ATAAGGACCTGGACACATTTCGTCACCAATATGTTGTGTTAGCATGTTTTGTTCTGGCAC 517
||||||||||||||||||||||||| || |||||||||||||| |||||||| |||| ||
Sbjct 472 ATAAGGACCTGGACACATTTCGTCATCAGTATGTTGTGTTAGCGTGTTTTGTACTGGGAC 531
Query 518 TTATCCTGAATGAAAAATTCAC-GTTTCAAGAGGTGTTCTGGGCGTTTTCTATCTACTTA 576
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 532 TTATCCTGAATGAAAAATTCACAGTT-CAAGAGGTGTTCTGGGCGTTTTCTATCTACTTA 590
Query 577 GAGGCAGTTGCTATCCTTCCCCAGTTGGTTCTGCTACAGAGAAGTGGGAATGTCGACAAT 636
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 591 GAGGCAGTTGCTATCCTTCCCCAGTTGGTTCTGCTACAAAGAAGTGGGAATGTCGACAAT 650
Query 637 TTGACTGGGCAATATGTTGTCTTTCTCGGGGCGTATCGTGGACTTTATATCATCAACTGG 696
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 651 TTGACTGGGCAATATGTTGTCTTTCTCGGGGCGTATCGGGGACTCTATATTATCAACTGG 710
Query 697 ATCTATCGCTATTTCACAGAAGATCATTTCTCTAGATGGATTGCTTGTGTGTCCGGTCTT 756
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 711 ATCTATCGCTATTTCACAGAAGATCATTTCACTAGATGGATTGCTTGTGTGTCTGGTCTT 770
Query 757 GTCCAAACAGCTCTCTACGCGGATTTCTTCTACTACTACTACATAAGCTGGAAAACCAAC 816
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GTCCAAACAGCTCTCTATGCGGATTTCTTCTACTACTACTACATAAGCTGGAAAACCAAC 830
Query 817 ACCAAACTTAAGCTTCCGGCTTGAAAAGAACCCGAAtttttttGCAATAGTATCAATATC 876
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 831 ACCAAACTTAAGCTTCCGGCTTGAAAAGAACCCGAATTTTTTTGCAATAGTATCAAAATC 890
Query 877 CAGGAAGTTACAG---T--T-ACC---GAAAAGAGAGACATGGTTAATATTTGGTTTCTC 927
||||||||||||| | | || ||||||| |||||||||||| |||||| | |||
Sbjct 891 CAGGAAGTTACAGCAATGGTGACATTAGAAAAGAAAGACATGGTTAACATTTGGGTCCTC 950
Query 928 CCTCTTTCTAACAATGAGTTGAAA-TTGAATGATGCAGGATTGTTGTTTAAAATGT-TCC 985
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 951 CCTCTTTCTAACAATGAGTTGAAAATTGAATGATGCAGGATTGTTGTTTAAAATGTGTTT 1010
Query 986 TTTTTT-AGTCTTTTAATGCACATTGTAACTTTCCCAACGATTTTAGACCTTGAGAAGAG 1044
|||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1011 TTTTTTTAGTCTTT-AATGCACATTGTAACTTTCCCGACGATTTTAGACATTGAGAAGAG 1069
Query 1045 GCTTAGTTTTATCAAAACTAGTCTTTATAGATAACACACAAACTCTGTTTCTTTTGTGCG 1104
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GCATCGTTTTATCAAAACTAGTCTTTATAGATAACACACAAACTCTGTTTCTTTTGTGCG 1129
Query 1105 AGTGTTTTGTTCAAAACTGTAGCTCGGATCAGAGCAAAGTTAACAATGTGTCTTC 1159
||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1130 AGTGTTTAGTTCAAAACTGTAGCTCAGATCAGAGCCAAGTTAACAATGTGTCTTC 1184
> AT1G29320.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:10255321-10258343 FORWARD LENGTH=1546
Length=1546
Score = 158 bits (85), Expect = 1e-37
Identities = 91/94 (97%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 1066 TCTTTATAGATAACACACAAACTCTGTTTCTTTTGTGCGAGTGTTTTGTTCAAAACTGTA 1125
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1546 TCTTTATAGATAACACACAAACTCTGTTTCTTTTGTGCGAGTGTTTAGTTCAAAACTGTA 1487
Query 1126 GCTCGGATCAGAGCAAAGTTAACAATGTGTCTTC 1159
|||| ||||||||| |||||||||||||||||||
Sbjct 1486 GCTCAGATCAGAGCCAAGTTAACAATGTGTCTTC 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5