BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473153
Length=491
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein fa... 606 5e-173
AT1G29510.1 | Symbols: SAUR68 | SAUR-like auxin-responsive prot... 385 3e-106
AT1G29500.1 | Symbols: | SAUR-like auxin-responsive protein fa... 366 9e-101
AT1G29440.1 | Symbols: | SAUR-like auxin-responsive protein fa... 335 3e-91
AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein fa... 281 3e-75
> AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10319744-10320402 FORWARD LENGTH=659
Length=659
Score = 606 bits (328), Expect = 5e-173
Identities = 438/489 (90%), Gaps = 16/489 (3%)
Strand=Plus/Plus
Query 11 CTaaa-aaaaTGATGAACACAAAGAAGCTAATCAAGATGGCCAAGAAATGGCAAAAGAAA 69
||||| | |||||||||||||||||| || || ||||||||||||||||||||| ||| |
Sbjct 83 CTAAACATAATGATGAACACAAAGAAACTCATGAAGATGGCCAAGAAATGGCAACAGAGA 142
Query 70 GCAGCATTAAGCAGGAAAAGAATCTCATTTCAGAGATCAAGTACTACCACTAGCAGCTCA 129
||||| ||||| ||||||||||||||||| |||||||||| | |||| ||||| ||||||
Sbjct 143 GCAGCCTTAAGGAGGAAAAGAATCTCATTCCAGAGATCAAATTCTACTACTAGTAGCTCA 202
Query 130 TCCGCAGG-AGAGAAGGGTTGTTTTGTAGTTTACACGGTGGATAAAGCCCGCTTTGCGTT 188
||||| || ||||||||| |||||||| |||||||| | |||| ||| |||||||| ||
Sbjct 203 TCCGC-GGTAGAGAAGGGCTGTTTTGTGGTTTACACTGCGGATCAAGTACGCTTTGCTTT 261
Query 189 TCCAATAAGTTACCTGAGCAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGA 248
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TCCGATAAGTTACCTGAGTAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGA 321
Query 249 GTTTGGCCTCCCCACAGAAGGACCGATCACGCTG-C---C-ATTCGATTCGATTTTCTTG 303
|||||| | |||||||||||||| |||||| || | | |||||||||||||||||||
Sbjct 322 GTTTGGTATTCCCACAGAAGGACCAATCACGTTGCCATTCGATTCGATTCGATTTTCTTG 381
Query 304 GAGTATCTCATCAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAACG-TCCTTAT 362
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 382 GAGTATCTCATCAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAACGCTC-TTAT 440
Query 363 AACGGCAATCTCTAGTGCTAGATGTTCTTCACAATGCTCTATGCAACTTGAGGAACATAG 422
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 441 AACGGCAATCTCTAGTGCTAGATGTTCTTCACAATGCTCTATGCAACTTCAAAAACATAC 500
Query 423 TAGTGCTCAGCGTTTGCTTGTATTTTAGAGAATTAGTGTCAAGCAATATCTTTGTTTGTA 482
|||| |||||| || | | || ||| ||||||||||| ||||||||| ||||||||||||
Sbjct 501 TAGTACTCAGC-TT-G-T-GT-TTT-AGAGAATTAGTATCAAGCAATTTCTTTGTTTGTA 554
Query 483 AAGATTCTA 491
|||||||||
Sbjct 555 AAGATTCTA 563
> AT1G29510.1 | Symbols: SAUR68 | SAUR-like auxin-responsive protein
family | chr1:10322574-10323189 FORWARD LENGTH=616
Length=616
Score = 385 bits (208), Expect = 3e-106
Identities = 366/440 (83%), Gaps = 19/440 (4%)
Strand=Plus/Plus
Query 19 ATGATGAACACAAAGAAGCTAATCAAGATGGCCAAGAAATGGCAA-AAGAAAGCAG-CAT 76
||||| ||| |||||||||| || |||||||| |||||||||||| || | ||||| | |
Sbjct 113 ATGATAAACGCAAAGAAGCTTATGAAGATGGCTAAGAAATGGCAACAA-AGAGCAGCCCT 171
Query 77 TAAGCAGGAAAAGAATCTCATTTCAGAGATC-AA-GTACTACCACTAGCAGCTCATCCGC 134
| ||||||||||||||||||||||||||| || || || ||||||||||| || |
Sbjct 172 CCA-CAGGAAAAGAATCTCATTTCAGAGATCAAATGT-CT-TTACTAGCAGCTCTTCTAC 228
Query 135 AGGAGAGAAGGGTTGTTTTGTAGTTTACACGGTGGATAAAGCCCGCTTTGCGTTTCCAAT 194
| ||| ||||||||||| || || ||||||| ||||||| ||||||||| ||||||||
Sbjct 229 TGTAGAAAAGGGTTGTTTCGTGGTCTACACGGCGGATAAAATCCGCTTTGCTTTTCCAAT 288
Query 195 AAGTTACCTGAGCAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGAGTTTGG 254
|||||| |||||||||||| || | |||||||||||||| ||||||||||||||||| ||
Sbjct 289 AAGTTATCTGAGCAACTCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTCGG 348
Query 255 CCTCCCCACAGAAGGACCGATCACGCTGCCATTCGATTCGATTTTCTTGGAGTATCTCAT 314
||||| || |||||||| ||||| |||| ||||||||| |||||||||||||||||||
Sbjct 349 TCTCCCAACGGAAGGACCAATCACATTGCCGTTCGATTCGGTTTTCTTGGAGTATCTCAT 408
Query 315 CAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAACG-TCCT-TATAACGGCAATC 372
|||| ||||| |||||||||||||||||||||||||||| | || | | | | | |||||
Sbjct 409 CAAACTGATCCAAAGACGAATGGATGGAGATACAGAAAAGGCTC-TGT-TGATGTCAATC 466
Query 373 TCTAGTGCTA-GATGTTCTTCACAATGCTCTATGCAACTTG-AGGAACATAGTAGTGCTC 430
|||||||||| | ||||||| |||||| ||| ||| || | | ||||| |||| |||
Sbjct 467 TCTAGTGCTAAG-TGTTCTTTACAATGTTCTTTGCTACA-GCAAGAACAGAGTA---CTC 521
Query 431 AGCGTTTGCTTGTATTTTAG 450
| | ||||||||||| |||
Sbjct 522 AACAATTGCTTGTATTATAG 541
> AT1G29500.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10321210-10321864 FORWARD LENGTH=655
Length=655
Score = 366 bits (198), Expect = 9e-101
Identities = 392/480 (82%), Gaps = 36/480 (8%)
Strand=Plus/Plus
Query 18 aaTGATGAACACAAAGAAGCTAATCAAGATGGCCAAGAAATGGCAAAAGAAAGCAGCAT- 76
||||||||||||||||||||||||||||||| || |||||||||| ||| |||||| |
Sbjct 80 AATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGAAATGGCAACAGAGAGCAGC-TC 138
Query 77 T-AAGCAGGAAAAGAATCTCATTTCAGAGATCAAGTACTACCACTAGCAGCTCATCCGCA 135
| | |||||||||||||||||| || ||| |||| || | | | ||||| || |
Sbjct 139 TCCA-CAGGAAAAGAATCTCATTCCAAAGACCAAG---TA-C-C---C-GCTCAACCACT 188
Query 136 GGAGAGAAGGGTTGTTTTGTAGTTTACACGGTGGATAA-AGCCCGCTTTGCGTTTCCAAT 194
| ||||||||| || ||||| |||||||||| ||| || | | |||||||| ||||| ||
Sbjct 189 GTAGAGAAGGGATGCTTTGTCGTTTACACGGCGGACAACA-CACGCTTTGCTTTTCCGAT 247
Query 195 AAGTTACCTGAGCAACTCTGTTA-TTCAAGAGCTCTTGAAGATATCTGAAGAAGAGTTTG 253
||| ||||| |||||||||| || |||||||| | ||| |||||||||||||||||||||
Sbjct 248 AAGCTACCTAAGCAACTCTG-TATTTCAAGAGATTTTGGAGATATCTGAAGAAGAGTTTG 306
Query 254 GCCTCCCCACAGAAGGACCGATCACGCTGCCATTCGATTCGATTTTCTTGGAGTATCTCA 313
||||||| || | ||||| ||||| | |||||||||||| |||| |||||||||||||
Sbjct 307 GCCTCCCAACCGGTGGACCAATCACATTACCATTCGATTCGGTTTTTTTGGAGTATCTCA 366
Query 314 TCAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAACGTCCTTAT-AACGGCAATC 372
|||||||||||||||||||||||||||||||||||||||| | | || | || | |||||
Sbjct 367 TCAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAAGG-CTTTGTTAATGTCAATC 425
Query 373 TCTAGTGCTAGATGTTCTTCACAATGCTCTATGCAACTTGAGGAACATAGTAGTGCTCAG 432
||||||||||||||||||| ||| | ||| || |||| |||| ||||
Sbjct 426 TCTAGTGCTAGATGTTCTTTGCAA------A---AACA--AG-AACAGAGTA---CTCAA 470
Query 433 CGTTTGCTTGTATTTTAGAGAATTAGTGTCAAGCAATATCTT-TGTTTGTAAAGATTCTA 491
| |||||||||||||||||||||||||| |||| | | || |||||||||||||||||
Sbjct 471 CAATTGCTTGTATTTTAGAGAATTAGTGTGTAGCAGTTT-TTGTGTTTGTAAAGATTCTA 529
> AT1G29440.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10304507-10305108 REVERSE LENGTH=602
Length=602
Score = 335 bits (181), Expect = 3e-91
Identities = 315/379 (83%), Gaps = 12/379 (3%)
Strand=Plus/Plus
Query 19 ATGATGAACACAAAGAAGCTAATCAAGATGGCCAAGAAATGGCAA-AAGAAAGCAG-CAT 76
||||| ||| |||||||||| || |||||||| |||||||||||| || | ||||| | |
Sbjct 113 ATGATAAACGCAAAGAAGCTTATGAAGATGGCTAAGAAATGGCAACAA-AGAGCAGCCCT 171
Query 77 TAAGCAGGAAAAGAATCTCATTTCAGAGATCAAGTA-CTACCACTAGCAGCTCATCCGCA 135
| ||||||||||||||||||||||||||||||| || ||||||||||| || |
Sbjct 172 CCA-CAGGAAAAGAATCTCATTTCAGAGATCAAGTGTCTTT-ACTAGCAGCTCTTCTACT 229
Query 136 GGAGAGAAGGGTTGTTTTGTAGTTTACACGGTGGATAAAGCCCGCTTTGCGTTTCCAATA 195
| ||| ||||||||||| || |||||||||| ||||||| ||||||||| |||||||||
Sbjct 230 GTAGAAAAGGGTTGTTTCGTGGTTTACACGGCGGATAAAATCCGCTTTGCTTTTCCAATA 289
Query 196 AGTTACCTGAGCAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGAGTTT-GG 254
||||| ||||||||||||||| | || ||||| ||||| |||||||||||||| ||| ||
Sbjct 290 AGTTATCTGAGCAACTCTGTTGTCCAGGAGCTATTGAAAATATCTGAAGAAGA-TTTCGG 348
Query 255 CCTCCCCACAGAAGGACCGATCACGCTGCCATTCGATTCGAT-TTTCTTGGAGTATCTCA 313
||||| || |||||||| ||||| | |||||||||||| ||| || |||||||||
Sbjct 349 TCTCCCAACGGAAGGACCAATCACATTACCATTCGATTCGGCCTTT-TTAGAGTATCTCG 407
Query 314 TCAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAACGTCCTTATAACGG-CAATC 372
||||| ||||| ||||||||||||||| |||||||||||| | | || | | | |||||
Sbjct 408 TCAAACTGATCCAAAGACGAATGGATGAAGATACAGAAAAGG-CTTTGTTATTGTCAATC 466
Query 373 TCTAGTGCTAGATGTTCTT 391
|| ||||||||||| ||||
Sbjct 467 TCAAGTGCTAGATGCTCTT 485
> AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10307507-10308143 REVERSE LENGTH=637
Length=637
Score = 281 bits (152), Expect = 3e-75
Identities = 324/402 (81%), Gaps = 31/402 (8%)
Strand=Plus/Plus
Query 15 aaaaaTGATGAACACAAAGAAGCTAATCAAGATGGCCAAGAAATGGCAA-AAGAAAGCAG 73
||| ||||| ||||| ||||| ||| ||||||||||||||||||||||| || | ||| |
Sbjct 85 AAAGATGATCAACACTAAGAAACTACTCAAGATGGCCAAGAAATGGCAACAA-AGAGCTG 143
Query 74 -CATTAAGCAGGAAAAGAATCTCATTTCAGAGATCAAGTACTAC--C-ACTAGC-A--GC 126
| | ||| ||||||||||||||||| || ||||||| |||||| | |||| | | |
Sbjct 144 CCCTCAAG-AGGAAAAGAATCTCATTCCAAAGATCAACTACTACTACTACTA-CTACTAC 201
Query 127 T-C-A-T-C---C-G--C-A--G--G-AGAGAAGGGTTGTTTTGTAGTTTACACGGTGGA 170
| | | | | | | | | | | |||||||| ||||| || ||||||||||| ||
Sbjct 202 TACTACTACTAGCAGCTCAACTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGA 261
Query 171 TAAAGCCCGCTTTGCGTTTCCAATAAGTTACCTGAGCAACTCTGTTATTC-AAGAGCTCT 229
|||| ||||||||| ||||| |||||||| ||| |||||||||| ||| |||||||||
Sbjct 262 TAAAATCCGCTTTGCTTTTCCGTTAAGTTACTTGAACAACTCTGTT-TTCGAAGAGCTCT 320
Query 230 TGAAGATATCTGAAGAAGAGTTTGGCCTCCCCACAGAAGGACCGATCACGCTGCCATTCG 289
|||||||||||||||||||||| |||||| | | ||||| |||||| |||| ||||
Sbjct 321 TGAAGATATCTGAAGAAGAGTTCGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTCG 380
Query 290 ATTCGATTTTCTTGGAGTATCTCATCAAATTGATCAAAAGACGAATGGATGGAGATACAG 349
| ||| ||||||||||||||||||||||||| ||| || || ||||||||||||||||||
Sbjct 381 ACTCGGTTTTCTTGGAGTATCTCATCAAATTTATCGAACGAAGAATGGATGGAGATACAG 440
Query 350 AAAACG-TCCTTATAACGGCAATCTCTAGTGCTAGATGTTCT 390
|||| | || || ||| | ||||||||||||||||||| |||
Sbjct 441 AAAAAGCTCTTT-TAATGTCAATCTCTAGTGCTAGATGCTCT 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23409112502
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5