BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473154
Length=438
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29510.1 | Symbols: SAUR68 | SAUR-like auxin-responsive prot... 499 8e-141
AT1G29430.1 | Symbols: | SAUR-like auxin-responsive protein fa... 473 5e-133
AT5G27780.1 | Symbols: | SAUR-like auxin-responsive protein fa... 449 8e-126
AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein fa... 442 1e-123
AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein fa... 422 2e-117
AT1G29500.1 | Symbols: | SAUR-like auxin-responsive protein fa... 361 4e-99
AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein fa... 287 7e-77
> AT1G29510.1 | Symbols: SAUR68 | SAUR-like auxin-responsive protein
family | chr1:10322574-10323189 FORWARD LENGTH=616
Length=616
Score = 499 bits (270), Expect = 8e-141
Identities = 391/446 (88%), Gaps = 22/446 (5%)
Strand=Plus/Plus
Query 1 ATGATGATGAACACAAAGAAGCTCT-TGAAGATGGCCAAGAAATGGCAACAAAGAGCAG- 58
|||||||| ||| |||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 110 ATGATGATAAACGCAAAGAAGCT-TATGAAGATGGCTAAGAAATGGCAACAAAGAGCAGC 168
Query 59 CCTTCAGCAGGAAAAGAATCTCATTTCAGAGTTCAAGTG-C-TT-CTAGCAGCTCAACCA 115
||| || |||||||||||||||||||||||| |||| || | || |||||||||| | |
Sbjct 169 CCTCCA-CAGGAAAAGAATCTCATTTCAGAGATCAAATGTCTTTACTAGCAGCTCTTCTA 227
Query 116 CTGTAGAGAAGGGTTGTTTCGTGGTTTACACGGCAGATAAAATCCGCTTTGCTTTTCCTT 175
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 228 CTGTAGAAAAGGGTTGTTTCGTGGTCTACACGGCGGATAAAATCCGCTTTGCTTTTCCAA 287
Query 176 TAAGTTACCTGAGCAACCCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTTG 235
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 288 TAAGTTATCTGAGCAACTCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTCG 347
Query 236 GTCTCCCGACAGAAGGACCAATCACATTGACATTCGATTCCGCTTTT-TTAGCGTATCTC 294
||||||| || |||||||||||||||||| | |||||||| | |||| || | |||||||
Sbjct 348 GTCTCCCAACGGAAGGACCAATCACATTGCCGTTCGATTCGG-TTTTCTTGGAGTATCTC 406
Query 295 ATCAGATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGTT-ATTGTCAAT 353
|||| | ||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 407 ATCAAACTGATCCAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGTTGAT-GTCAAT 465
Query 354 CTCTAGTGCTA-GATGTTCTTTACAATGTTCTCTGCAACGAGAAAAACAACAATGTAGTA 412
||||||||||| | |||||||||||||||||| ||| || || || | | || | ||||
Sbjct 466 CTCTAGTGCTAAG-TGTTCTTTACAATGTTCTTTGCTAC-AGCAAGA-A-CA--G-AGTA 518
Query 413 CTACTCAACAGTTGCTTGTATTTTAG 438
|| | |||| ||||||||||| |||
Sbjct 519 CT-C--AACAATTGCTTGTATTATAG 541
> AT1G29430.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10302650-10303335 REVERSE LENGTH=686
Length=686
Score = 473 bits (256), Expect = 5e-133
Identities = 343/384 (89%), Gaps = 9/384 (2%)
Strand=Plus/Plus
Query 1 ATGATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGCC 60
|||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 110 ATGATGATAAACGCAAAGAAGCTCATGAAGTTGGCCAAGAAATGGCAACAAAGAGCAGCC 169
Query 61 TTC-AGCAGGAAAAGAATCTCATTTCAGAGTTCAAG---TGCTTCTAGCAGCTCAACCA- 115
|| || || |||||||| ||||||||||| ||||| | || |||||||| ||| ||
Sbjct 170 CTCAAG-AGAAAAAGAATTTCATTTCAGAGATCAAGTATTACTACTAGCAGC-CAAACAG 227
Query 116 CTGTAGAGAAGGGTTGTTTCGTGGTTTACACGGCAGATAAAATCCGCTTTGCTTTTCCTT 175
||||||| |||||||||||||||||||||||||| ||||| ||||| ||| | ||||| |
Sbjct 228 CTGTAGAAAAGGGTTGTTTCGTGGTTTACACGGCTGATAAGATCCGTTTTTCATTTCCCT 287
Query 176 TAAGTTACCTGAGCAACCCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTTG 235
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 288 TAAGTTACCTAAGCAACACTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTCG 347
Query 236 GTCTCCCGACAGAAGGACCAATCACATTGACATTCGATTCCGCTTTTTTAGCGTATCTCA 295
|||||||||| |||||||||||||||||| |||||||||| || ||||||| ||||||||
Sbjct 348 GTCTCCCGACGGAAGGACCAATCACATTGCCATTCGATTCGGCCTTTTTAGAGTATCTCA 407
Query 296 TCAGAT-TGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGTTATTGTCAATC 354
||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 408 TCA-ATCTGATCCAAAGACGAATGGATGAAGATACAGAAAAGGCTCTGTTATTGTCAATC 466
Query 355 TCTAGTGCTAGATGTTCTTTACAA 378
|| ||||||||| | ||||| |||
Sbjct 467 TCAAGTGCTAGAAGCTCTTTTCAA 490
> AT5G27780.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:9838885-9839313 REVERSE LENGTH=429
Length=429
Score = 449 bits (243), Expect = 8e-126
Identities = 341/387 (88%), Gaps = 12/387 (3%)
Strand=Plus/Plus
Query 1 ATGATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGCC 60
|||||||| ||| |||||| |||| ||||| |||| |||| |||||||||||||||||||
Sbjct 1 ATGATGATAAACGCAAAGACGCTCATGAAGTTGGCTAAGACATGGCAACAAAGAGCAGCC 60
Query 61 TTC-AGCAGGAAAAGAATCTCATTTCAGAGTTCAAG---TGCT--T-CTAGCAGCTC-AA 112
|| || ||||||||||| ||||||||||| ||||| | || | |||||||| | ||
Sbjct 61 CTCAAG-AGGAAAAGAATTTCATTTCAGAGATCAAGTATTACTACTACTAGCAGC-CAAA 118
Query 113 CCACTGTAGAGAAGGGTTGTTTCGTGGTTTACACGGCAGATAAAATCCGCTTTGCTTTTC 172
| |||||||| |||||||||||||||||||||||||| ||||| ||||| ||| | ||||
Sbjct 119 CAACTGTAGAAAAGGGTTGTTTCGTGGTTTACACGGCTGATAAGATCCGTTTTTCATTTC 178
Query 173 CTTTAAGTTACCTGAGCAACCCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGT 232
| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 179 CCTTAAGTTACCTAAGCAACACTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGT 238
Query 233 TTGGTCTCCCGACAGAAGGACCAATCACATTGACATTCGATTCCG-CTTTTTTAGCGTAT 291
| ||||||||||| |||||||||||||||||| |||||||||| | |||||| || ||||
Sbjct 239 TCGGTCTCCCGACGGAAGGACCAATCACATTGCCATTCGATTCGGTCTTTTT-AGAGTAT 297
Query 292 CTCATCAGATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGTTATTGTCA 351
||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 298 CTCATCAAACTGATCCAAAGACGAATGGATGAAGATACAGAAAAGGCTCTGTTATGGTCA 357
Query 352 ATCTCTAGTGCTAGATGTTCTTTACAA 378
||||| ||||||||||| ||||| |||
Sbjct 358 ATCTCAAGTGCTAGATGCTCTTTGCAA 384
> AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10301152-10301951 REVERSE LENGTH=800
Length=800
Score = 442 bits (239), Expect = 1e-123
Identities = 344/394 (87%), Gaps = 9/394 (2%)
Strand=Plus/Plus
Query 4 ATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTC 63
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 44 ATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTTA 103
Query 64 AGCAGGAAAAGAATCTCATTTCAGAGTTCAAGTGCT--T-CTAGCAGCTCAACCACTGTA 120
|| |||||||||||||| ||||| || |||| || | | |||||||||||||| ||| |
Sbjct 104 AGAAGGAAAAGAATCTCTTTTCATAGATCAACTGATACTACTAGCAGCTCAACCGCTGCA 163
Query 121 GAGAAGGGTTGTTTCGTGGTTTACACGGCAGATAAAATCCGCTTTGCTTTTCCTTTAAGT 180
|||||||| ||||| ||||||||||| | |||| |||||||||||||||||| |||||
Sbjct 164 GAGAAGGGCTGTTTTGTGGTTTACACATCCGATAGAATCCGCTTTGCTTTTCCAATAAGT 223
Query 181 TACCTGAGCAACCCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTTGGTC-T 239
|| ||||||||| || || |||||||||||||||| ||||| |||||||||||||| | |
Sbjct 224 TATCTGAGCAACTCTGTTATCCAAGAGCTCTTGAAGATATCCGAAGAAGAGTTTGG-CAT 282
Query 240 CCCGACAGAAGGACCAATCACATTGACATTCGATTCCGCTTTT-TTAGCGTATCTCATCA 298
||| || |||||||||||||||||| |||||||||| | |||| || | |||||||||||
Sbjct 283 CCCCACGGAAGGACCAATCACATTGCCATTCGATTCGG-TTTTCTTGGAGTATCTCATCA 341
Query 299 GATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGT-TATTGTCAATCTCT 357
||||| || ||||||||||||||||||| |||||||||||||| | || ||||||||||
Sbjct 342 GATTGGTCCAAAGACGAATGGATGGAGACACAGAAAAGGCTCT-TATAACGTCAATCTCT 400
Query 358 AGTGCTAGATGTTCTTTACAATGTTCTCTGCAAC 391
||| ||||||||||||||| ||| ||| | ||||
Sbjct 401 AGTACTAGATGTTCTTTACCATGCTCTTTTCAAC 434
> AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10319744-10320402 FORWARD LENGTH=659
Length=659
Score = 422 bits (228), Expect = 2e-117
Identities = 350/408 (86%), Gaps = 12/408 (3%)
Strand=Plus/Plus
Query 4 ATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTC 63
||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 92 ATGATGAACACAAAGAAACTCATGAAGATGGCCAAGAAATGGCAACAGAGAGCAGCCTTA 151
Query 64 AGCAGGAAAAGAATCTCATTTCAGAGTTCAAGTGCT--T-CTAGCAGCTCAACCACTGTA 120
|| ||||||||||||||||| ||||| |||| | || | |||| |||||| || | |||
Sbjct 152 AGGAGGAAAAGAATCTCATTCCAGAGATCAAATTCTACTACTAGTAGCTCATCCGCGGTA 211
Query 121 GAGAAGGGTTGTTTCGTGGTTTACACGGCAGATAAAATCCGCTTTGCTTTTCCTTTAAGT 180
|||||||| ||||| ||||||||||| || ||| || | |||||||||||||| |||||
Sbjct 212 GAGAAGGGCTGTTTTGTGGTTTACACTGCGGATCAAGTACGCTTTGCTTTTCCGATAAGT 271
Query 181 TACCTGAGCAACCCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTTGGT-CT 239
|||||||| ||| || || | |||||||||||||| ||||||||||||||||||||| |
Sbjct 272 TACCTGAGTAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGAGTTTGGTATT 331
Query 240 CCCGACAGAAGGACCAATCACATTGACATTCGATTC----CGCTTTT-TTAGCGTATCTC 294
||| ||||||||||||||||| ||| |||||||||| || |||| || | |||||||
Sbjct 332 CCC-ACAGAAGGACCAATCACGTTGCCATTCGATTCGATTCGATTTTCTTGGAGTATCTC 390
Query 295 ATCAGATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGT-TATTGTCAAT 353
|||| ||||||| |||||||||||||||||||||||||||| ||||| | || | ||||
Sbjct 391 ATCAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAACGCTCT-TATAACGGCAAT 449
Query 354 CTCTAGTGCTAGATGTTCTTTACAATGTTCTCTGCAACGAGAAAAACA 401
|||||||||||||||||||| |||||| ||| |||||| |||||||
Sbjct 450 CTCTAGTGCTAGATGTTCTTCACAATGCTCTATGCAACTTCAAAAACA 497
> AT1G29500.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10321210-10321864 FORWARD LENGTH=655
Length=655
Score = 361 bits (195), Expect = 4e-99
Identities = 322/381 (85%), Gaps = 18/381 (5%)
Strand=Plus/Plus
Query 4 ATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGC-CTT 62
|||||||||||||||||||| | |||||| || |||||||||||| |||||||| ||
Sbjct 81 ATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGAAATGGCAACAGAGAGCAGCTCTC 140
Query 63 CAGCAGGAAAAGAATCTCATTTCAGAGTTCAAGTGCTTCTAGCAGCTCAACCACTGTAGA 122
|| |||||||||||||||||| || || ||||| | | | ||||||||||||||||
Sbjct 141 CA-CAGGAAAAGAATCTCATTCCAAAGACCAAGTAC--C---C-GCTCAACCACTGTAGA 193
Query 123 GAAGGGTTG-TTTCGTGGTTTACACGGCAGATAAAATC-CGCTTTGCTTTTCCTTTAAGT 180
|||||| || ||| || ||||||||||| || || | | |||||||||||||| ||||
Sbjct 194 GAAGGGATGCTTT-GTCGTTTACACGGCGGACAACA-CACGCTTTGCTTTTCCGATAAGC 251
Query 181 TACCTGAGCAAC-C-CTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTTGGTC 238
||||| |||||| | |||| | |||||| | ||| | |||||||||||||||||||| |
Sbjct 252 TACCTAAGCAACTCTGTATT-T-CAAGAGATTTTGGAGATATCTGAAGAAGAGTTTGGCC 309
Query 239 TCCCGACAGAAGGACCAATCACATTGA-CATTCGATTCCGCTTTTTTAGCGTATCTCATC 297
|||| || | |||||||||||||| | |||||||||| | |||||| | ||||||||||
Sbjct 310 TCCCAACCGGTGGACCAATCACATT-ACCATTCGATTCGGTTTTTTTGGAGTATCTCATC 368
Query 298 AGATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGTTATTGTCAATCTCT 357
| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 369 AAATTGATCAAAAGACGAATGGATGGAGATACAGAAAAGGCTTTGTTAATGTCAATCTCT 428
Query 358 AGTGCTAGATGTTCTTTACAA 378
||||||||||||||||| |||
Sbjct 429 AGTGCTAGATGTTCTTTGCAA 449
> AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10307507-10308143 REVERSE LENGTH=637
Length=637
Score = 287 bits (155), Expect = 7e-77
Identities = 234/273 (86%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 101 CTAGCAGCTCAACCACTGTAGAGAAGGGTTGTTTCGTGGTTTACACGGCAGATAAAATCC 160
||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||||||
Sbjct 210 CTAGCAGCTCAACTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGATAAAATCC 269
Query 161 GCTTTGCTTTTCCTTTAAGTTACCTGAGCAACCCTATTGTCCAAGAGCTCTTGAAAATAT 220
||||||||||||| ||||||||| ||| |||| || || || ||||||||||||| ||||
Sbjct 270 GCTTTGCTTTTCCGTTAAGTTACTTGAACAACTCTGTTTTCGAAGAGCTCTTGAAGATAT 329
Query 221 CTGAAGAAGAGTTTGGTCTCCCGACAGAAGGACCAATCACATTGACATTCGATTCCGCTT 280
||||||||||||| || ||| | | | ||||||||||| ||| | ||||| || | ||
Sbjct 330 CTGAAGAAGAGTTCGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTCGACTCGG-TT 388
Query 281 TT-TTAGCGTATCTCATCAGATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCT 339
|| || | ||||||||||| ||| |||||| || |||||||||||||||||||||| |||
Sbjct 389 TTCTTGGAGTATCTCATCAAATTTATCGAACGAAGAATGGATGGAGATACAGAAAAAGCT 448
Query 340 CTGTTATTGTCAATCTCTAGTGCTAGATGTTCT 372
|| ||| |||||||||||||||||||||| |||
Sbjct 449 CTTTTAATGTCAATCTCTAGTGCTAGATGCTCT 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20810848086
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5