BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473157
Length=469
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein fa... 298 3e-80
AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein fa... 176 2e-43
AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein fa... 154 7e-37
> AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10307507-10308143 REVERSE LENGTH=637
Length=637
Score = 298 bits (161), Expect = 3e-80
Identities = 207/229 (90%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 205 AAGATCCTCTGAAGAAGAGTTCGGCCTCACGGCAGGTGGACCAATCACGTTGCCGTTCGA 264
||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 323 AAGAT-ATCTGAAGAAGAGTTCGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTCGA 381
Query 265 TTCCGTTTTCTTGGAGTATCTCATCACATTGATCGGACGAAGAATCGATGGAGATACAGA 324
|| |||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||
Sbjct 382 CTCGGTTTTCTTGGAGTATCTCATCAAATTTATCGAACGAAGAATGGATGGAGATACAGA 441
Query 325 AAAGGCTCTGCTAATGTCAATCTCTAGTGCTAGATGCTCTTTGCAACTACAAGAACAACA 384
||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 442 AAAAGCTCTTTTAATGTCAATCTCTAGTGCTAGATGCTCTATGCAACCACAAGAACAACA 501
Query 385 AAGTAGT-AGTACTCAACAATTACTTGTATTTTAGAGAATTATACTGTA 432
||| || | ||| |||||||||||||||||||||||||||| | ||||
Sbjct 502 GAGTGGTTA-TACCCAACAATTACTTGTATTTTAGAGAATTAGAGTGTA 549
Score = 209 bits (113), Expect = 2e-53
Identities = 184/215 (86%), Gaps = 18/215 (8%)
Strand=Plus/Plus
Query 19 AAAGATGATCAACACTAAGAAACTACTCAAGATGGCCAAGAAATGGCAACAGAGAGCAGC 78
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 85 AAAGATGATCAACACTAAGAAACTACTCAAGATGGCCAAGAAATGGCAACAAAGAGCTGC 144
Query 79 CCTACAC-AGGAAAAGAATATCATTTCAGAGATCAAGTACTACTACTACTAGTA------ 131
||| || ||||||||||| ||||| || ||||||| |||||||||||||| ||
Sbjct 145 CCT-CAAGAGGAAAAGAATCTCATTCCAAAGATCAACTACTACTACTACTACTACTACTA 203
Query 132 ---------GCAGCTCATCTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGATA 182
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 CTACTACTAGCAGCTCAACTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGATA 263
Query 183 AAATCCGCTTTGCTTTTCCCATAAGATCCTCTGAA 217
||||||||||||||||||| |||| | || ||||
Sbjct 264 AAATCCGCTTTGCTTTTCCGTTAAGTTACT-TGAA 297
Score = 91.6 bits (49), Expect = 6e-18
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 421 AATTATACTGTATTAGATAGACAGATCATTTCAAAAATACAAACTACTA 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 AATTATACTGTATTAGATAGACAGATCATTTCAAAAATACAAACTACTA 619
> AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10319744-10320402 FORWARD LENGTH=659
Length=659
Score = 176 bits (95), Expect = 2e-43
Identities = 158/187 (84%), Gaps = 10/187 (5%)
Strand=Plus/Plus
Query 23 ATGATCAACACTAAGAAACTAC-TCAAGATGGCCAAGAAATGGCAACAGAGAGCAGCCCT 81
||||| ||||| |||||||| | | ||||||||||||||||||||||||||||||||| |
Sbjct 92 ATGATGAACACAAAGAAACT-CATGAAGATGGCCAAGAAATGGCAACAGAGAGCAGCCTT 150
Query 82 ACAC-AGGAAAAGAATATCATTTCAGAGATCAAGTACTACTACTACTAGTAGCAGCTCAT 140
| | ||||||||||| ||||| |||||||||| | | |||||||||||||| ||||
Sbjct 151 A-AGGAGGAAAAGAATCTCATTCCAGAGATCAAAT--T-CTACTACTAGTAGC---TCAT 203
Query 141 CTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGATAAAATCCGCTTTGCTTTTC 200
| || || |||||||||||||| ||||||||||| | ||| || | |||||||||||||
Sbjct 204 CCGCGGTAGAGAAGGGCTGTTTTGTGGTTTACACTGCGGATCAAGTACGCTTTGCTTTTC 263
Query 201 CCATAAG 207
| |||||
Sbjct 264 CGATAAG 270
> AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10301152-10301951 REVERSE LENGTH=800
Length=800
Score = 154 bits (83), Expect = 7e-37
Identities = 155/188 (82%), Gaps = 12/188 (6%)
Strand=Plus/Plus
Query 23 ATGATCAACACTAAGAAACTAC-TCAAGATGGCCAAGAAATGGCAACAGAGAGCAGCCCT 81
||||| ||||| ||||| || | | ||||||||||||||||||||||||||||| ||| |
Sbjct 44 ATGATGAACACAAAGAAGCT-CTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTT 102
Query 82 ACACA-GGAAAAGAATATCATTTCAGAGATCAAGTACTACTACTACTAGTAGCAGCTCAT 140
| | | |||||||||| || ||||| ||||||| | | ||||||||| |||||||
Sbjct 103 A-AGAAGGAAAAGAATCTCTTTTCATAGATCAACTG--A-TACTACTAG---CAGCTCAA 155
Query 141 CTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTT-GATAAAATCCGCTTTGCTTTT 199
| |||| |||||||||||||| ||||||||||| | |||| ||||||||||||||||
Sbjct 156 CCGCTGCAGAGAAGGGCTGTTTTGTGGTTTACACA-TCCGATAGAATCCGCTTTGCTTTT 214
Query 200 CCCATAAG 207
|| |||||
Sbjct 215 CCAATAAG 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22303961268
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5