BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473160 Length=742 Score E Sequences producing significant alignments: (Bits) Value AT1G29520.1 | Symbols: | AWPM-19-like family protein | chr1:10... 1138 0.0 AT4G39925.1 | Symbols: | AT hook motif DNA-binding family prot... 329 2e-89 > AT1G29520.1 | Symbols: | AWPM-19-like family protein | chr1:10323655-10324743 FORWARD LENGTH=775 Length=775 Score = 1138 bits (616), Expect = 0.0 Identities = 720/766 (94%), Gaps = 24/766 (3%) Strand=Plus/Plus Query 1 CATAAGAACAAACTTCATTTTCCTCATTCTTCTTTCTTCTCTCTTCCTCCCGCTTTCGTA 60 |||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||| Sbjct 4 CATAAGAACAAACTTCATCTTCTTCATTCTTCTTTCTTCTCTTTTTGTCCCGCTTTCGTA 63 Query 61 GTTTTTCAAAAGGCGAAATGGCGGGTGAGCAAATGAAACCTGTTGCCTCTGGACTACTTG 120 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | Sbjct 64 GTTTTTCAAAAGGCGAAATGGCGGGTGAGCAAATCAAACCTGTTGCCTCTGGACTTCTAG 123 Query 121 TTTTGAATTTCTGCATGTATGTGATCGTTCTAGGCATTGGAGGATGGGCCATGAACCGAG 180 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 TTTTGAACTTCTGCATGTATGTGATCGTTCTAGGCATTGGAGGATGGGCCATGAACCGAG 183 Query 181 CCATCGACCATGGATTCGAAGTCGGCCCTAATTTAGAGCTTCCAGCACATTTCTCCCCAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 CCATCGACCATGGATTCGAAGTCGGCCCTAATTTAGAGCTTCCAGCACATTTCTCCCCAA 243 Query 241 TTTATTTCCCGATGGGAAACGCAGCCACAGGATTCTTTGTGATATTCGCGTTGCTAGCGG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 TTTATTTCCCGATGGGAAACGCAGCCACAGGATTCTTTGTGATATTCGCGTTGCTAGCGG 303 Query 301 GAGTGGTTGGTGCGGCTTCCACAATCTCAGGCCTTAGCCACATTCGTTCGTGGACCGTGG 360 |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 GAGTAGTTGGAGCAGCTTCCACAATCTCAGGCCTTAGCCACATTCGTTCGTGGACCGTGG 363 Query 361 GAAGCTTACCAGCTGCAGCCACAGCTGCAACCATTGCCTGGACCCTCACAGTCCTCGCCA 420 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 364 GAAGCTTACCAGCAGCAGCCACAGCTGCAACCATTGCCTGGACCCTCACAGTCCTTGCCA 423 Query 421 TGGGTTTCGCTTGGAAAGAAATCGAGCTACAAGGGCGAAATGCAAAACTGAGAACCATGG 480 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 424 TGGGTTTCGCTTGGAAAGAAATCGAGCTACAAGGGAGAAATGCAAAACTGAGAACCATGG 483 Query 481 AGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATCGCAGCAGTTCACGGCG 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 484 AGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATCGCAGCAGTTCATGGCG 543 Query 541 TGAGGAGACCTTAAGGAATCATTT-T-----TC---TT-C----CTT--T-T-GTGGCAA 582 ||||||||||||||||||||||| | || || | ||| | | ||||||| Sbjct 544 TGAGGAGACCTTAAGGAATCATTCATGGGCGTCGGATTTCTTTTCTTCCTATTGTGGCAA 603 Query 583 TCATCGGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGTTTG-G-TTTATTT 640 ||||| |||||||||||||||||||||||||||||||||||||||| || | ||||||| Sbjct 604 TCATCCGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGAGTGTGCTTTATTT 663 Query 641 TC---ATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAGGATTGGATCTT 697 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 664 TCTTCATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAGGATTAGATCTT 723 Query 698 GTTTTGTGTGT-GTCACTTTGTGTTCATGGAATAAAATCAAACTTT 742 ||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 724 GTTTTGTGTGTTGTCACTTTGTGTTCATGGAATAAAATCGAACTTT 769 > AT4G39925.1 | Symbols: | AT hook motif DNA-binding family protein | chr4:18517409-18518052 REVERSE LENGTH=429 Length=429 Score = 329 bits (178), Expect = 2e-89 Identities = 261/297 (88%), Gaps = 22/297 (7%) Strand=Plus/Plus Query 465 AAACTGAGAACCATGGAGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATC 524 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 AAA-TGAGAACCATGGAGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATC 190 Query 525 GCAGCAGTTCACGGCGTGAGGAGACCTTAAGGAATCAT-----T----TTTCTTCCTTTT 575 || | |||||| ||| ||||| |||||||||||||||| | |||| | || | Sbjct 191 GCTGGAGTTCATGGCATGAGG-GACCTTAAGGAATCATGGGCGTCGGGTTTC-TACTGTG 248 Query 576 G----TGGCAATCATCGGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGTTT 631 | ||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 249 GCAAATGGCAATCATCCGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGAGT 308 Query 632 G-G-TTTATTTT---CATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAG 686 | | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 GTGCTTTATTTTGTTCATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAG 368 Query 687 GATTGGATCTTGTTTTGTGTGT-GTCACTTTGTGTTCATGGAATAAAATCAAACTTT 742 |||| ||||||||||||||||| |||||||||||||||| |||||| ||| |||||| Sbjct 369 GATTAGATCTTGTTTTGTGTGTTGTCACTTTGTGTTCATAGAATAAGATCGAACTTT 425 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36017883399 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5