BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473160
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29520.1 | Symbols: | AWPM-19-like family protein | chr1:10... 1138 0.0
AT4G39925.1 | Symbols: | AT hook motif DNA-binding family prot... 329 2e-89
> AT1G29520.1 | Symbols: | AWPM-19-like family protein | chr1:10323655-10324743
FORWARD LENGTH=775
Length=775
Score = 1138 bits (616), Expect = 0.0
Identities = 720/766 (94%), Gaps = 24/766 (3%)
Strand=Plus/Plus
Query 1 CATAAGAACAAACTTCATTTTCCTCATTCTTCTTTCTTCTCTCTTCCTCCCGCTTTCGTA 60
|||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||
Sbjct 4 CATAAGAACAAACTTCATCTTCTTCATTCTTCTTTCTTCTCTTTTTGTCCCGCTTTCGTA 63
Query 61 GTTTTTCAAAAGGCGAAATGGCGGGTGAGCAAATGAAACCTGTTGCCTCTGGACTACTTG 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 64 GTTTTTCAAAAGGCGAAATGGCGGGTGAGCAAATCAAACCTGTTGCCTCTGGACTTCTAG 123
Query 121 TTTTGAATTTCTGCATGTATGTGATCGTTCTAGGCATTGGAGGATGGGCCATGAACCGAG 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TTTTGAACTTCTGCATGTATGTGATCGTTCTAGGCATTGGAGGATGGGCCATGAACCGAG 183
Query 181 CCATCGACCATGGATTCGAAGTCGGCCCTAATTTAGAGCTTCCAGCACATTTCTCCCCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CCATCGACCATGGATTCGAAGTCGGCCCTAATTTAGAGCTTCCAGCACATTTCTCCCCAA 243
Query 241 TTTATTTCCCGATGGGAAACGCAGCCACAGGATTCTTTGTGATATTCGCGTTGCTAGCGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TTTATTTCCCGATGGGAAACGCAGCCACAGGATTCTTTGTGATATTCGCGTTGCTAGCGG 303
Query 301 GAGTGGTTGGTGCGGCTTCCACAATCTCAGGCCTTAGCCACATTCGTTCGTGGACCGTGG 360
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GAGTAGTTGGAGCAGCTTCCACAATCTCAGGCCTTAGCCACATTCGTTCGTGGACCGTGG 363
Query 361 GAAGCTTACCAGCTGCAGCCACAGCTGCAACCATTGCCTGGACCCTCACAGTCCTCGCCA 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 364 GAAGCTTACCAGCAGCAGCCACAGCTGCAACCATTGCCTGGACCCTCACAGTCCTTGCCA 423
Query 421 TGGGTTTCGCTTGGAAAGAAATCGAGCTACAAGGGCGAAATGCAAAACTGAGAACCATGG 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 424 TGGGTTTCGCTTGGAAAGAAATCGAGCTACAAGGGAGAAATGCAAAACTGAGAACCATGG 483
Query 481 AGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATCGCAGCAGTTCACGGCG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 484 AGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATCGCAGCAGTTCATGGCG 543
Query 541 TGAGGAGACCTTAAGGAATCATTT-T-----TC---TT-C----CTT--T-T-GTGGCAA 582
||||||||||||||||||||||| | || || | ||| | | |||||||
Sbjct 544 TGAGGAGACCTTAAGGAATCATTCATGGGCGTCGGATTTCTTTTCTTCCTATTGTGGCAA 603
Query 583 TCATCGGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGTTTG-G-TTTATTT 640
||||| |||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 604 TCATCCGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGAGTGTGCTTTATTT 663
Query 641 TC---ATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAGGATTGGATCTT 697
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 664 TCTTCATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAGGATTAGATCTT 723
Query 698 GTTTTGTGTGT-GTCACTTTGTGTTCATGGAATAAAATCAAACTTT 742
||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 724 GTTTTGTGTGTTGTCACTTTGTGTTCATGGAATAAAATCGAACTTT 769
> AT4G39925.1 | Symbols: | AT hook motif DNA-binding family protein
| chr4:18517409-18518052 REVERSE LENGTH=429
Length=429
Score = 329 bits (178), Expect = 2e-89
Identities = 261/297 (88%), Gaps = 22/297 (7%)
Strand=Plus/Plus
Query 465 AAACTGAGAACCATGGAGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATC 524
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 AAA-TGAGAACCATGGAGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATC 190
Query 525 GCAGCAGTTCACGGCGTGAGGAGACCTTAAGGAATCAT-----T----TTTCTTCCTTTT 575
|| | |||||| ||| ||||| |||||||||||||||| | |||| | || |
Sbjct 191 GCTGGAGTTCATGGCATGAGG-GACCTTAAGGAATCATGGGCGTCGGGTTTC-TACTGTG 248
Query 576 G----TGGCAATCATCGGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGTTT 631
| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 249 GCAAATGGCAATCATCCGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGAGT 308
Query 632 G-G-TTTATTTT---CATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAG 686
| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GTGCTTTATTTTGTTCATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAG 368
Query 687 GATTGGATCTTGTTTTGTGTGT-GTCACTTTGTGTTCATGGAATAAAATCAAACTTT 742
|||| ||||||||||||||||| |||||||||||||||| |||||| ||| ||||||
Sbjct 369 GATTAGATCTTGTTTTGTGTGTTGTCACTTTGTGTTCATAGAATAAGATCGAACTTT 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5