BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473161
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29530.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1411 0.0
> AT1G29530.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G34310.3);
Has 84 Blast hits to 78 proteins in 24 species: Archae - 2;
Bacteria - 4; Metazoa - 9; Fungi - 8; Plants - 55; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:10324745-10326735
REVERSE LENGTH=1127
Length=1127
Score = 1411 bits (764), Expect = 0.0
Identities = 954/1045 (91%), Gaps = 15/1045 (1%)
Strand=Plus/Plus
Query 1 AGACAAATTTTGAAGTTTGAAGTGAAGAAACAGTTTCATTTTGGGGCGACGAATTCGATT 60
||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 12 AGACAAAATTTGAAGTTTGAAGTGAAGAAACAATTTCATTTTGCGGCGACGAATTCGAAT 71
Query 61 TTTCCGATCGATCATGCCGTCCGGTGCgaagaagagaaaggcgttgaagaagaagaagCA 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 72 TTTCCGATCGATCATGCCGTCCGGTGCGAAGAAAAGAAAGGCGTTGAAGAAGAAGAAGCA 131
Query 121 ACAGGAAGCGATTGGAACAAGTACCAACAGAAATGATGAACATGGAAGCCAAGATGGGAG 180
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 132 ACAGGAAGCGATTGGAACAAGTATCAACGGAAATGATGAACATGGAAGCCAAGATGGGAG 191
Query 181 GGGAAGTGATAGTAGTTTGAGCTCCCCTGGTTCTCAAGGAAATGAAGTTTTTGGGACTAA 240
|||||||||||| |||||||| || |||||||||||||||||| ||| |||||||||||
Sbjct 192 GGGAAGTGATAGCAGTTTGAGTTCTCCTGGTTCTCAAGGAAATCAAGAATTTGGGACTAA 251
Query 241 AGATTCATCTGCTGCT-CTATCCTCTGGTGTGGCGAAGGGTGCTGT-TAAAGAGATATCT 298
||||||||||||| || ||||| |||| ||||| ||| |||||| | |||||||||||||
Sbjct 252 AGATTCATCTGCT-CTTCTATCTTCTGCTGTGGTGAAAGGTGCT-TCTAAAGAGATATCT 309
Query 299 GGAGATGCAGGTGTTACTCAGGGACTAGGACCGAAAAGTGGCAATGCTATTGTGGGAAGA 358
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |
Sbjct 310 AGAGATGCAGGTGTTACTCAGGGACTAGGACCCAAAACTGGCAATGCTATTGTGGAAAAA 369
Query 359 TCAACCAATTCCTCTTCTGAAAACCGTACTCACCCCGCCAAAAATGTAGCTTGTGGTAAT 418
||||| || ||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 370 TCAACTAACTCCTCTTCTGATAACCGTACTCGCCCCGCCAAAAATGTAGCTTGTGGTAAT 429
Query 419 TCAGTTACGGAAATCACTCCCGTCATTGATTCTGTCAAACCTGTGGTTTCTCTCTCCAAA 478
|||||||| ||||||||||| || |||||||||| ||||||||||||||| ||||||||
Sbjct 430 TCAGTTACAGAAATCACTCCAGTTGTTGATTCTGTTAAACCTGTGGTTTCTATCTCCAAA 489
Query 479 GCAGTGATTTCTGAAAAGAGTAAGCATGTTGAGACCTCAACACACTCAAATTTGGTGACA 538
|||||| ||||||||||||| || |||||||||||||||||||||||||||||| | |
Sbjct 490 ACAGTGACTTCTGAAAAGAGTGGGCTTGTTGAGACCTCAACACACTCAAATTTGGTCAAA 549
Query 539 AACACGTCTGAGAAAAATGAAGAGTATCATCCATCTCCGGGACTGGAAAACAATAATAGT 598
|| | |||||||||| |||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 550 AAGAAGTCTGAGAAAGATGAAGAGTATCATCCGTCTCCGGTATTGGAAAACAATAATAGT 609
Query 599 AAGGTGGTTACT-CTTCCGAGATCTGCTGCTGAAACAAGCAAAAAAGTAGAGAGTGTAAG 657
|||||||||| | ||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 610 AAGGTGGTTA-TGCTTCCAAGATCTGCTCCTGAAACAAGCAAAAAAGTAGAGAGCGTAAG 668
Query 658 AAAATCTGAAGTTCCAGTATCCCCTGAGGAAAAGGTAGCTCTTTTGCTGCCTGGTCCACC 717
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 669 AAAATCTGAAGTTCCAGTATCCCCTGAGGAAAAGC---CTCTTTTGCTACCTGGTCCACC 725
Query 718 AGTTGTCCGAAGGACTTCATTTCTAAGCTGCTGCGGTTTGTTTGATGCTATGACAGGATC 777
||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 726 AGTCGTCCGAAGGACTTCATGGCTAAGCTGCTGCGGTTTGTTTGATGCTATGACTGGATC 785
Query 778 TGATAGATAAACACAGGTTAG-TAAGAGC-AGGAGCTAGGTGGATGCGCTTGACAGCCAA 835
|||||||||||||||| | || | |||| || | ||||||||||||||||||| |||
Sbjct 786 TGATAGATAAACACAGATGAGCTG-GAGCTAG-ATAAAGGTGGATGCGCTTGACAGTCAA 843
Query 836 AGCTTAAAGACAACCGAAAAAATAGGATTCATGGTCCGTACACTCTTCTCTGTACATTAT 895
| || ||||||||||||||| ||||| |||||||| ||| |||||||||||||||||||
Sbjct 844 AACTCAAAGACAACCGAAAAT-TAGGAGTCATGGTCTGTATACTCTTCTCTGTACATTAT 902
Query 896 GTCTTTGATAGATAATAATGTGGGCGGCTTTTAGCAACATACGAGAAAGACCAAATATCC 955
|||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| |
Sbjct 903 ATCTTCGATAGATAATAATGTGGGCGGCTTTTAGCAACGTACGAGCAAGACCAAATATGC 962
Query 956 TAAACAGGGTAAACTTTCtttttatttttttGAAATACAATCTTCTTTTGTTCATTAAAT 1015
||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct 963 AAAACAGGGTAAACTTTCTTTTTATTCTTT-GAAATACAATCTTCTTTTGTTCATCAAAT 1021
Query 1016 GGATTTTAGAACATGAGATTTTTCT 1040
|||||||||||||||||||| ||||
Sbjct 1022 GGATTTTAGAACATGAGATTATTCT 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5