BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473164
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29550.1 | Symbols: | Eukaryotic initiation factor 4E prote... 1153 0.0
AT1G29590.2 | Symbols: eIF4E3 | Eukaryotic initiation factor 4E... 1051 0.0
> AT1G29550.1 | Symbols: | Eukaryotic initiation factor 4E protein
| chr1:10330514-10332326 FORWARD LENGTH=955
Length=955
Score = 1153 bits (624), Expect = 0.0
Identities = 859/966 (89%), Gaps = 42/966 (4%)
Strand=Plus/Plus
Query 1 ATGGTGGTTGTTGATTCTTCGGCATCGGCGATAATGGCTGATCAGAACATCGATCCTAAC 60
||||||||| |||||| | | |||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGTTACGGATTCTCCAGTTTCGGGGATAATGGCTGATCAGAACATCGATCCTAAC 60
Query 61 ACCGCGACGAACCCTAG-CCGTCAAGAGAAGCATGTTCCGGCGATTAAGGCTATCTCGGG 119
||| |||||| |||||| || | |||||||||||||| | ||||||||||||||||| ||
Sbjct 61 ACCACGACGAGCCCTAGTCC-TAAAGAGAAGCATGTTTCTGCGATTAAGGCTATCTCCGG 119
Query 120 CGACGAGAAATCTCCGTCGAAGGAGAAAAAGAACGATGACTACGCGTCAAAGAAATCAAC 179
|||||||||| |||||||||||||| ||| || || |||||||||| |||||||||||
Sbjct 120 CGACGAGAAAGCTCCGTCGAAGGAG--AAA-AA-GA--ACTACGCGTCGAAGAAATCAAC 173
Query 180 CACCGTAATCCAGAAATCTCACTGCTTCCAGAATTCTTGGACCTTTTGGTTCGATAATCC 239
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 174 TACCGTAATCCAGAAATCGCACTGTTTCCAGAATTCTTGGACATTTTGGTTCGATAATCC 233
Query 240 TTCCTCGAAATCGAATCAAGTCACATGGGGAAGTTCTTTGAGATCTTTGTACACATTCGC 299
|||||| |||||||||||||||| ||||||||| ||||||||||| ||||| |||||||
Sbjct 234 TTCCTCCAAATCGAATCAAGTCATATGGGGAAGCTCTTTGAGATCCTTGTATACATTCGG 293
Query 300 TACTATCGAAGAGTTCTGGAGTCTTTACAATAACATTCATCCTCCAACCAAGTGGGTTCC 359
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 294 TACTATCGAAGAGTTCTGGAGTCTCTACAATAACATTCATCCTCCAACCAAGTGGGTTTC 353
Query 360 AGGGGCGGATCTCTACTGCTTCAAACATAAGATTGAACCAAAATGGGAAGATCCGATCTG 419
||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 354 GGGGGCGGATCTTTACTGCTTCAAAGATAAGATTGAACCAAAATGGGAAGATCCTATCTG 413
Query 420 TGCTAATGGAGGAAAATGGACTATGTTTTTCCCTAAAGCAGCTACACTAGAATCCAATTG 479
|||||||||||||||||||| |||| | |||||| || |||||||||||||| ||||||
Sbjct 414 TGCTAATGGAGGAAAATGGAGTATGATGTTCCCT-AA--AGCTACACTAGAATGCAATTG 470
Query 480 GCTTAACACGCTACTTGCGATGGTTGGTGAGCAATTTGACCAAGGAGATCAGATTTGTGG 539
|||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 471 GCTTAACACGTTACTTGCGTTGGTTGGTGAGCAATTTGACCAAGGAGATGAGATCTGTGG 530
Query 540 GGCAGTTTTGAACTTCAGAACCAGAGGGGACAGGATCTCTCTATGGACAAAGAACGCTGC 599
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 531 AGCAGTTTTGAACTTCAGAGCGAGAGGGGACAGGATCTCTCTATGGACAAAGAACGCTGC 590
Query 600 AAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGGAAGGAACTTCTTGGCTACAGTGA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 591 AAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGGAAGGAACTTCTTGGCTACAATGA 650
Query 660 CACAATCGGATTTATAGTTCATGAGGATGCAAAGACTCTTGATCGTGATGCTAAACGTCG 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GACAATCGGATTTATAGTTCATGAGGATGCAAAGACTCTTGATCGTGATGCTAAACGTCG 710
Query 720 ATATACTGTATGAGATTC-ACAGTTTTACTTGTCAGCTTCGCCGGGGAAAAAGAAG-AGA 777
|||||||||||||||||| ||||||||||||||||||||||||||||||| | || |||
Sbjct 711 ATATACTGTATGAGATTCAACAGTTTTACTTGTCAGCTTCGCCGGGGAAATCG-AGAAGA 769
Query 778 CTTCGAAGGGAAAGTC-ATAT-A-C---A-TTACCTCT-A-GT-TGTTT-C--T------ 818
| | ||||| ||||| | || | | | || ||||| | | | ||| | |
Sbjct 770 CGTAAAAGGGGAAGTCAACATGACCTTTAGTTGCCTCTGATCTATCTTTACTGTAAAAAA 829
Query 819 -GAT-C-TATCT--TT-AC--TGT-AAAAATCAGAATTGTTGAAACGGATTTGTATCAAA 869
||| | || | || || | | || ||||||||||||||||||||| |||||||||
Sbjct 830 AGATGCACATTTAGTTCACATTTTCAACTATCAGAATTGTTGAAACGGATCTGTATCAAA 889
Query 870 TGTACATGATTTCGTAATTTTCTTAGTGGTATAATGAAAAAGGAATTTCGAAATTATATT 929
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||
Sbjct 890 AGTACATGATTTCGTAATTTTCTTAGTGGTATAAAGGAAAAGGAATTTCGAAATTACATT 949
Query 930 TCTTAC 935
||||||
Sbjct 950 TCTTAC 955
> AT1G29590.2 | Symbols: eIF4E3 | Eukaryotic initiation factor
4E protein | chr1:10339937-10342848 FORWARD LENGTH=1136
Length=1136
Score = 1051 bits (569), Expect = 0.0
Identities = 681/733 (93%), Gaps = 15/733 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGTTGTTGATTCTTCGGCATCGGCGATAATGGCTGATCAGAACATCGATCCTAAC 60
||||||||| | |||||| | | |||| || ||||||||||||||||||||||||||||
Sbjct 136 ATGGTGGTTATGGATTCTCCAGTTTCGGGGAGAATGGCTGATCAGAACATCGATCCTAAC 195
Query 61 ACCGCGACGAACCCTAG-CCGTCA-AGAGAAGCATGTTCCGGCGATTAAGGCTATCTCGG 118
||| |||||| |||||| || | | ||||||||||||| ||||||||||||||||||| |
Sbjct 196 ACCACGACGAGCCCTAGTCC-T-ATAGAGAAGCATGTTTCGGCGATTAAGGCTATCTCCG 253
Query 119 GCGACGAGAAATCTCCGTCGAAGGAGAAAAAGAACGATGACTACGCGTCAAAGAAATCAA 178
||||||||||| |||||||||||||| ||| || || |||||||||| ||||||||||
Sbjct 254 GCGACGAGAAAGCTCCGTCGAAGGAG--AAA-AA-GA--ACTACGCGTCGAAGAAATCAA 307
Query 179 CCACCGTAATCCAGAAATCTCACTGCTTCCAGAATTCTTGGACCTTTTGGTTCGATAATC 238
| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 308 CTACCGTAATCCAGAAATCGCACTGTTTCCAGAATTCTTGGACATTTTGGTTCGATAATC 367
Query 239 CTTCCTCGAAATCGAATCAAGTCACATGGGGAAGTTCTTTGAGATCTTTGTACACATTCG 298
||||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 368 CTTCCTCCAAATCGAATCAAGTCATATGGGGAAGCTCTTTGAGATCTTTGTATACATTCG 427
Query 299 CTACTATCGAAGAGTTCTGGAGTCTTTACAATAACATTCATCCTCCAACCAAGTGGGT-T 357
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 428 CTACCATCGAAGAGTTCTGGAGTCTTTACAATAACATTCATCCTCCAACCAAGTGGGTGT 487
Query 358 CCAGGGGCGGATCTCTACTGCTTCAAACATAAGATTGAACCAAAATGGGAAGATCCGATC 417
||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 488 -CAGGGTCGGATCTCTACTGCTTCAAAGATAAGATTGAACCAAAATGGGAAGATCCTATC 546
Query 418 TGTGCTAATGGAGGAAAATGGACTATGTTTTTCCCTAAAGCAGCTACACTAGAATCCAAT 477
||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 547 TGTGCCAATGGAGGAAAATGGACTATGTTTTTCCCT--AG-AGCTACACTAGAATCTAAT 603
Query 478 TGGCTTAACACGCTACTTGCGATGGTTGGTGAGCAATTTGACCAAGGAGATCAGATTTGT 537
|||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 604 TGGCTTAACACGTTACTTGCGTTGGTTGGTGAGCAATTTGACCAAGGAGATGAGATCTGT 663
Query 538 GGGGCAGTTTTGAACTTCAGAACCAGAGGGGACAGGATCTCTCTATGGACAAAGAACGCT 597
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 664 GGAGCAGTTTTGAACTTCAGAACGAGAGGGGACAGGATCTCTCTATGGACAAAGAAAGCT 723
Query 598 GCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGGAAGGAACTTCTTGGCTACAGT 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 724 GCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGGAAGGAACTTCTTGGCTACAAT 783
Query 658 GACACAATCGGATTTATAGTTCATGAGGATGCAAAGACTCTTGATCGTGATGCTAAACGT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GACACAATCGGATTTATAGTTCATGAGGATGCAAAGACTCTTGATCGTGATGCTAAACGT 843
Query 718 CGATATACTGTAT 730
||||||||| |||
Sbjct 844 CGATATACTATAT 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5