BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473168
Length=2515
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29630.2 | Symbols: | 5'-3' exonuclease family protein | ch... 3653 0.0
> AT1G29630.2 | Symbols: | 5'-3' exonuclease family protein |
chr1:10349466-10353731 FORWARD LENGTH=2522
Length=2522
Score = 3653 bits (1978), Expect = 0.0
Identities = 2339/2508 (93%), Gaps = 45/2508 (2%)
Strand=Plus/Plus
Query 1 AAAACACCCCTCCTCGATTGTCGTCGATACAGTCCAGGCTCCTGAAATGTTCTCGTCAGG 60
||||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||
Sbjct 1 AAAACACCCCTCCTCGA-T-T-GTCGATACAGTCCAGGTTCCTGAAATGTTCTCGTCAGG 57
Query 61 GCGAAATTAGGGTTTCTTCATTCTCGTCCTTGAGAATCGTA-TTGGAACAGGAAGGAGAG 119
|||| |||||||||||||||||| ||||||| ||| ||||| ||| ||||||||||||||
Sbjct 58 GCGACATTAGGGTTTCTTCATTCCCGTCCTTCAGATTCGTATTTGAAACAGGAAGGAGAG 117
Query 120 -GAAATGGGTATTCAAGGGCTTTTGCCGTTGTTGAAATCGATAATGGTACCGATTCATAT 178
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AAAAATGGGTATACAAGGGCTTTTGCCGTTGTTGAAATCGATAATGGTACCGATTCATAT 177
Query 179 CAAGGAGCTTGAGGGTTGTATCGTCGCCGTCGATACATATTCATGGCTACACAAAGGTGC 238
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 CAAGGAGCTCGAGGGTTGTATCGTCGCCGTCGATACATATTCATGGCTACACAAAGGGGC 237
Query 239 GTTATCTTGTAGCCGAGAGCTCTGCAAGGGATTACCCACCAAGAGGCATATTCAATATTG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 TTTATCTTGTAGCCGAGAGCTCTGCAAGGGATTACCCACCAAGAGGCATATTCAATACTG 297
Query 299 TATGCATAGAGTGAATTTACTCCGCCATCATGGAGTGAAGCCTATCATGGTCTTCGATGG 358
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 298 TATGCATAGAGTGAATTTACTTCGCCATCATGGAGTGAAGCCTATCATGGTCTTTGATGG 357
Query 359 AGGTCCATTACCGATGAAACTAGAACAAGAGAATAAGCGTGCTAGATCCAGAAAGGAAAA 418
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 AGGTCCGTTACCGATGAAACTAGAACAAGAGAATAAGCGTGCTAGGTCCAGAAAGGAAAA 417
Query 419 TCTTGCACGTGCATTGGAACATGAAGCAAATGGAAATTCCTCAGCTGCTTATGAGTGCTA 478
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTTGCTCGTGCATTGGAGCATGAAGCAAATGGAAATTCCTCAGCTGCTTATGAGTGCTA 477
Query 479 TTCAAAGGCTGTAGACATTTCACCTTCTATTGCACACGAATTGATACAGGTTCTGAGGCA 538
|||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 478 CTCAAAGGCCGTAGATATTTCACCTTCTATTGCACATGAGTTGATACAGGTTCTGAGGCA 537
Query 539 GGAGAATGTTGATTACGTTGTTGCTCCTTACGAAGCTGATGCGCAGATGACATTCTTAGC 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 538 GGAGAATGTTGATTACGTTGTTGCTCCTTACGAAGCTGATGCGCAGATGGCATTCTTAGC 597
Query 599 TGTTACTAAGCAAGTTGATGCGATTATCACTGAGGATTCTGATCTCGTACCTTTTGGCTG 658
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 598 TATTACTAAGCAAGTTGATGCGATTATCACTGAGGATTCTGATCTCATACCTTTTGGCTG 657
Query 659 CCCAAGAATCATTTTTAAAATGGATAAGTTTGGTCATGGTGTTGAGTTTCAAGCCTCCAA 718
|| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 658 CCTAAGAATCATTTTCAAAATGGACAAGTTTGGTCATGGTGTTGAGTTTCAAGCCTCCAA 717
Query 719 GCTACCCAAAAATAAGGATCTCAGTCTTTCGGGATTTTCAAGCCAAATGCTTCTCGAAAT 778
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 718 GCTACCCAAAAATAAGGATCTCAGTCTATCAGGATTTTCAAGCCAAATGCTTCTCGAAAT 777
Query 779 GTGCATATTAAGTGGTTGCGATTATCTGCAGTCACTTCCAGGAATGGGACTCAAAAGAGC 838
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 778 GTGCATATTAAGTGGCTGCGATTATTTGCAGTCACTTCCAGGAATGGGACTCAAAAGAGC 837
Query 839 TCATGCACTCATTACAAAGTTCAAAAGCTATGACAGGGTAATTAAACACTTAAAGTACAG 898
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 838 ACATGCACTCATTACAAAATTCAAAAGCTATGACAGGGTAATTAAGCACTTAAAGTACAG 897
Query 899 CACAGTTTCAGTTCCTCCTCTTTATGAAGAGTCATTCAAGAGAGCCTTACTGACTTTCAA 958
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 CACAGTTTCAGTTCCTCCTCTTTATGAAGAGTCATTCAAGAGAGCTTTACTGACTTTCAA 957
Query 959 GCATCAACGTGTATATGACCCAAACACTGAAGATATTATACACTTATCTGACATTTCTGA 1018
|||||||||||| ||||||||||| |||||||||| |||||||| | ||||||||||||
Sbjct 958 GCATCAACGTGTCTATGACCCAAATGCTGAAGATATCATACACTTGTGTGACATTTCTGA 1017
Query 1019 CTACCTTGGCGAAGATTCAGATTTTGAAAATTTAATTGATTTCTTAACGTCATTCACATC 1078
| ||||||| |||||||||||||||| | | | | | | ||||
Sbjct 1018 CAACCTTGGTGAAGATTCAGATTTTG------T-A--G----------G-C---C-CATC 1053
Query 1079 GATGCCACAACATATTGCTAAGGGTATAGCACTAGGCCAGCTTGATCCCTTCACACAGTT 1138
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1054 GATGCCACAAGATATTGCTAAGGGTATAGCTCTAGGCCAGCTTGATCCCTTCACACAGTT 1113
Query 1139 GCCATTCCAGGCTGAGAGTGTTACTCCTATATTGGCTGTTGATGTTATATCCCGTCCCAA 1198
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1114 GCCATTCCAGGCTGAGAGTGTTACTCCTAAATTGGCTGTTGATGATATATCCCGTCCCAA 1173
Query 1199 AAGTTTCAAACCTGAAACTGTAAAGAAAAAGCTTGATTTGCCAGTCCAGAAAAACCTTCT 1258
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1174 AAGTTTCAAACCTGAAACTGTAAAGAAAAAGCTTGATTTGCCAGTCCAAAAAAACCTTCT 1233
Query 1259 CACAAAGTACTTCTGCTTTGCATCTGTTGAGGCAAAAAGAAAATTCAAGGCTCCTAGGAT 1318
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1234 CACCAAGTACTTCTGCTTTGCGTCTGTTGAGGCAAAAAGAAAATTCAAGGCTCCTAGGAT 1293
Query 1319 ATCACCAATGTCTCTGACCCCAACTGATGAATCTCCAAGCACTCCTGAGGATAATGCAAC 1378
|||||||||||||||||||||||||||||| |||||||||| |||||| || || || |
Sbjct 1294 ATCACCAATGTCTCTGACCCCAACTGATGAGTCTCCAAGCATTCCTGATGACAACACACC 1353
Query 1379 GGATATAGATGCTCTTTCAAGTCAGACAACAAATGAATCCCCGGTTTATAGCTTGGATGA 1438
||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1354 AGATTTAGATGCTCTTTCAAGCCAGACAACAAATGAATCCCCGGTTTATAGCTTGGGTGA 1413
Query 1439 GAATGCATGTGTTAGCAAAGTTGCAGAGAAAAGAGAGTCACCCGATGATGATGCAATGGA 1498
|||| ||||||||||| ||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 1414 GAATCCATGTGTTAGCGAAGTTGCAGAGAAAAGAGATTCACCCGATGACGATGCAGTGGA 1473
Query 1499 AAAGAATCACAAGGATCTTCATCATAAATACGGCGATCGGGAAGTGGA-ACGGCCAAAGA 1557
|| |||||||||||| ||||||||||||||| |||| ||||||||||| | |||| |||
Sbjct 1474 AAGGAATCACAAGGACCTTCATCATAAATACTGCGAACGGGAAGTGGATA-GGCCGAAGT 1532
Query 1558 AAGATAGTTTGAAGGTTATAGTAAGAAGCAAGTATTTTAAGCAGAAGCAGGAAGACAAAA 1617
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1533 CAGATAGTTTGAAGGTTATAGTAAGAAGCAAGTATTTTAAGCAGAAACAGGAGGACAAAA 1592
Query 1618 GTCTTAAACAATCGATCCCATGTCTTAATGATTGCTCTGTGATTGGTCAGAGAAAGGCTG 1677
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 GTCTGAAACAATCGATCCCATGTCTTAATGATTGCTCTGTGATTGGTCAGAGAAAGGCTG 1652
Query 1678 TTAAATCTGTGATTAACATGTCAAGCGCGTCTAAAAGAGAAGAGAGTCACAGAGCTATAG 1737
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 TTAAAACTGTGATTAACATGTCAAGCGCGTCTAAAAGAGAAGAGAGTCACAGAGCTATAG 1712
Query 1738 CAACAACAAGCCCATGTTTACATCACGACCGAATCTACAACGATCATGAAGATGCTAAAG 1797
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1713 ---CAACAAGTCCATGTTTACACCATGACCGAATCTACAACGATCATGAAGATGCTAAAG 1769
Query 1798 AAGCGAGTTTCTCTGCCATGAATGAGGTGGCTGAGAGAACAACAAACATCCACAAGATAA 1857
|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |
Sbjct 1770 AAGCGAGTTTCTCTGCCATGAACGAGGTGGCTGAGAGAACAATAAACACCCACAAGATTA 1829
Query 1858 ACCATCAGATCGATGAAGAGGAACAGAATCCATCCGTTGAAATCCCGTCTGCCTTTAGTA 1917
||||||||||| ||||||| |||||||| |||||||||||||| || |||||||||||||
Sbjct 1830 ACCATCAGATCAATGAAGAAGAACAGAACCCATCCGTTGAAATTCCTTCTGCCTTTAGTA 1889
Query 1918 CTCCCGAGAATGTTATACCTCTCTCTTCCATTGCTATCAATAGTTTTCATGGAGCTGCAA 1977
||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 1890 CTCCCGAGAATGTTATACCTCTCTCTTCCATTGCTATTGATAGTTGCCATGGAGTTGCAA 1949
Query 1978 CAGGGAAGAGGAAGCTTGACTTAGATGAAAATCTTCAGAAGGAAAA-TCAAAATTCCAAG 2036
||||||||||||||||||||| ||||||||| ||||| |||||||| | ||| ||||||
Sbjct 1950 CAGGGAAGAGGAAGCTTGACTCAGATGAAAACCTTCACAAGGAAAATTTGAAA-TCCAAG 2008
Query 2037 CACATGCGCATGGATGAAACAGATCCCGTTCTCAATGCTGAAACACCAGTT-GAAACCGA 2095
|||||||||||||||||||| ||| | | ||| ||||| ||||||||| || ||||||||
Sbjct 2009 CACATGCGCATGGATGAAACTGATACTGCTCTTAATGCAGAAACACCA-TTAGAAACCGA 2067
Query 2096 TAATGTTGGGAAGTTTGGATCGAACATTTCACATATAGGGCATTACTCAGAAATAGCAGA 2155
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068 TGATGTTGAGAAGTTTGGATCGAACATTTCACATATAGGGCATTACTCAGAAATAGCAGA 2127
Query 2156 GAAATCAGTGGAAAGATTTGTCTCAGCTATTTCATCTTTCAAATATTCTGGGACTGGCTC 2215
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2128 GAAATCAGTGGAAAGATTTGTCTCAGCTATATCGTCTTTCAAATATTCTGGGACTGGCTC 2187
Query 2216 TCGTGCTAGCGGTCTCCGTGCACCTCTCAAAGATATCCGCAACACTTGTCCGTCCAAAGG 2275
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2188 TCGTGCTAGCGGTCTCCGTGCCCCTCTCAAAGATATCCGCAACACTTGTCCGTCCAAAGG 2247
Query 2276 GTTATCTCCTAAACCAGACATCAGCAAGTTTGGCTATGCGTCAAGCAACTGACACATGGT 2335
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2248 GTTATCTCTTAAACCAGACATCAGCAAGTTTGGCTATGCGTCAAGCAACCGACACATGGT 2307
Query 2336 GACAAAGTCAAGGCGATTGTGATCTCAAATTTGTAAGTTAGCCATCTCTTTAGGGCCACA 2395
||||||||||||| || ||||| |||| |||||||||||| |||||||||||| ||||||
Sbjct 2308 GACAAAGTCAAGGAGAATGTGAGCTCAGATTTGTAAGTTAACCATCTCTTTAGAGCCACA 2367
Query 2396 TGTGAGAGCTTTAGCTTTGGAATCAACTTCTTGGTCGCATGAT-AT-TTTT-GGTGTTGT 2452
|||||||||||||||||| |||| ||||||||||||||||||| || |||| ||||||||
Sbjct 2368 TGTGAGAGCTTTAGCTTTAGAATTAACTTCTTGGTCGCATGATGATATTTTTGGTGTTGT 2427
Query 2453 AACTGTATTAGCTTT-T--T-ACTGTGCATAGCATTCTTGTTCAAAGA 2496
||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 2428 GTCTGTATTAGCTTTCTACTTACTGTGCATAGCATTCTTGTTCAAAGA 2475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124815354184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5