BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473169
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29660.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 2111 0.0
> AT1G29660.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:10371839-10373766 FORWARD LENGTH=1353
Length=1353
Score = 2111 bits (1143), Expect = 0.0
Identities = 1284/1350 (95%), Gaps = 17/1350 (1%)
Strand=Plus/Plus
Query 1 CACAACTACCACCACTACTACACTAACACTTATATCACCAACACATTGTGTTCTACTATA 60
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 CACAACGACCACCACTCCTACACTAACACTTATATCACCAACACATTGTGTTCTACTATA 70
Query 61 CATAAAATTCAGTTCCTAAGTAttttt-tttATG-GTTGTGAGATCGATGGAGAGTTACT 118
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 71 CATAAAATTCAGTTCCTAAGTATTTTTGTTT-TGTTTTGTGAGATCGATGGAGAGTTACT 129
Query 119 TGAGGAAATGGTGTTTACTTTCTGTGTGGGTTTTGCTTTTAGGTTTAGGGTTTAAGGTCA 178
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 130 TGAGGAAATGGTGTTTAGTTTCTGTGTGGGTTTTGCTTTTAGGTTTAGGGTTTAAGGTAA 189
Query 179 AAGCAGAGCCTCAAGTTCCATGTTACTTCATCTTTGGTGATTCTTTGGTTGACAATGGAA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 AAGCAGAGCCTCAAGTTCCATGTTACTTCATCTTTGGTGATTCTTTGGTTGACAATGGAA 249
Query 239 ACAACAATCGTCTTAGATCTATTGCAAGAGCCGATTATTTCCCTTACGGCATCGATTTCG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ACAACAATCGTCTTAGATCTATTGCAAGAGCCGATTATTTCCCTTACGGCATCGATTTCG 309
Query 299 GCGGCCCCACCGGCCGTTTTTCCAACGGAAAAACCACCGTCGACGTTCTCACTGAGCTAC 358
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 310 GCGGCCCCACCGGCCGTTTTTCCAACGGCAGAACCACCGTCGACGTTCTCACTGAGCTAC 369
Query 359 TTGGATTTGATAACTACATTCCTGCGTATAGTACTGTGAGTGGCCA-GCAGATACTTCAA 417
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 370 TTGGATTTGATAACTACATTCCTGCGTATAGTACTGTGAGTGGCCAAG-AGATACTTCAA 428
Query 418 GGAGTCAACTACGCATCTGCAGCTGCTGGAATCAGAGAAGAAACCGGTGCACAATTGGGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GGAGTCAACTACGCATCTGCAGCTGCTGGAATCAGAGAAGAAACCGGTGCACAATTGGGA 488
Query 478 GAAAGGATAACATTTAATGGGCAAGTAGAGAATTATAAGAACACAGTGGCAGCA-GTGGT 536
||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 489 CAAAGGATAACATTTAGTGGGCAAGTAGAGAATTATAAGAACACAGTGGCA-CAAGTGGT 547
Query 537 GGA-ACTTCTTGGAGACGAGAACACTGCAGCAGATTACCTGAGGAGATGCATTTACTCTG 595
||| | |||||||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct 548 GGAGA-TTCTTGGAGACGAGTACACTGCAGCAGATTACCTTAAGAGATGCATTTACTCTG 606
Query 596 TTGGTATGGGAAGCAATGACTATCTTAATAACTACTTCATGCCTCAGTTCTACCCCACTA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 607 TTGGTATGGGAAGCAATGACTATCTTAATAACTACTTCATGCCTCAGTTCTACTCCACTA 666
Query 656 GCAGACAGTACACTCCTGAACAGTATGCTGACGATCTTGTCAGTCGTTACAGGGAGCAGC 715
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 667 GCAGACAGTACACTCCCGAACAGTATGCTGACGATCTTATCAGTCGTTACAGGGACCAGC 726
Query 716 TTAATGCACTATACAACTATGGAGCTAGAAAGTTTGCATTGGTAGGAATTGGAGCCATTG 775
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TTAATGCACTGTACAACTATGGAGCTAGAAAGTTTGCATTGGTAGGAATTGGAGCCATTG 786
Query 776 GATGTAGCCCGAATGCGCTCGCACAGGGAAGCCCCGATGGAACAACTTGTGTGGAGCGTA 835
||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 787 GATGTAGTCCGAATGCGCTCGCACAGGGCAGCCAAGACGGAACAACTTGTGTGGAGCGTA 846
Query 836 TCAACTCGGCCAACCGAATCTTCAACAACAGGCTCATATCTATGGTCCAACAACTCAATA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 847 TCAACTCGGCCAACCGAATCTTCAACAACAGGCTCATATCTATGGTCCAACAACTAAACA 906
Query 896 GCGAACATTCCGATGCCAAGTT-CACTTATATCAATGCTTATGGCGCTTTCCAGGACATA 954
|| ||||||||||| | ||| |||||| |||||||||||||||||||| ||||| |||
Sbjct 907 ACGCTCATTCCGATGCTA-GTTTCACTTACATCAATGCTTATGGCGCTTTTCAGGATATA 965
Query 955 ATCGCCAATCCCTCTGCTTATGGGTTTACGGTTACGAACACAGCGTGTTGCGGAATTGGA 1014
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 966 ATCGCCAATCCCTCTGCTTATGGGTTTACGAATACGAACACTGCGTGTTGCGGAATTGGA 1025
Query 1015 AGGAACGGAGGTCAGCTAACATGTTTACCGGGACAACCCCCGTGCCTGAACCGAGATGAG 1074
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1026 AGGAACGGAGGTCAGCTAACATGTTTACCGGGAGAACCCCCGTGCTTGAACCGAGATGAG 1085
Query 1075 TACGTGTTTTGGGATGCATTTCATCCTTCAGCTGCCGCAAACACGGTCATTGCACAAAGA 1134
||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||
Sbjct 1086 TACGTGTTTTGGGATGCATTTCATCCTTCGGCTGCTGCAAACACGGCCATTGCAAAAAGA 1145
Query 1135 TCTTACAATGCACAAAGATCTTCCGACGTTAATCCGATTGATATCTCGCAATTGGCACAG 1194
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1146 TCTTACAATGCACAAAGATCTTCCGACGTTTATCCGATTGATATCTCGCAATTAGCACAG 1205
Query 1195 CTTTGAAAGGACAGAGAATAGGAGAGTTTTTA-AACAATTGTATGCTTTTCAGGTTCTAA 1253
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 1206 CTTTGAAAGGACAGAGAATAGGAGAGTTTT-ACAACAATTGTATGCTTTTCAGGTTATAA 1264
Query 1254 ATTGAATTCTTGGAAAT-ATTTCTGAAGTTATATGTGTACCCAAATTGTTCTACTTTATa 1312
|||||||| |||||||| ||| |||| ||||| |||||||||||| ||||| ||||||||
Sbjct 1265 ATTGAATTATTGGAAATGATT-CTGATGTTATGTGTGTACCCAAAGTGTTCAACTTTATA 1323
Query 1313 aaaaaaaa-aGG-ATTGCATTCTCTGAGTT 1340
|||||||| ||| |||||||| ||||||||
Sbjct 1324 AAAAAAAATAGGGATTGCATTATCTGAGTT 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65963516130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5