BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473170
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29670.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 2067 0.0
AT1G29680.1 | Symbols: | Protein of unknown function (DUF1264)... 111 1e-23
> AT1G29670.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:10375763-10377871 FORWARD LENGTH=1326
Length=1326
Score = 2067 bits (1119), Expect = 0.0
Identities = 1249/1312 (95%), Gaps = 7/1312 (1%)
Strand=Plus/Plus
Query 1 CTTCACATTCACTCATATCACTACACTTTCCATT-A-T--CGATATCTTTTTACTACTTA 56
|||||||||||||||||||||||||||||||||| | | | |||| |||||||||||||
Sbjct 1 CTTCACATTCACTCATATCACTACACTTTCCATTAATTACCAATATATTTTTACTACTTA 60
Query 57 AAAAAGATTTTGGTCTTGAAATGGAGAGTTATTTAAATAAATGGTGTGTAGTGCTTGTGT 116
|||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 61 AAAAAGATATTGGTCTTGAAATGGAGAGTTACTTAACGAAATGGTGTGTAGTGCTTGTGT 120
Query 117 TGATGTGTTTCGGGTTTAGTGTAGTAAAAGCACAAGCACAAGCTCAAGTTCCATGTTACT 176
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TGTTGTGTTTCGGGTTTAGTGTAGTAAAAGCACAAGCACAAGCTCAAGTTCCATGTTTCT 180
Query 177 TTATTTTTGGTGACTCTTTGGTTGACAATGGAAACAACAACGGACTTATTTCTATTGCAA 236
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TTGTTTTTGGTGACTCTTTGGTTGACAATGGAAACAACAACGGTCTTATTTCTATTGCAA 240
Query 237 GATCCAATTACTTCCCTTACGGTATCGATTTCGGCGGCCCTACCGGCCGTTTCTCCAACG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATCCAATTACTTCCCTTACGGTATCGATTTCGGCGGCCCTACCGGCCGTTTCTCCAACG 300
Query 297 GCAAGACCACTGTTGATGAGACCGCTGAGCTACTTGGATTTAATGGCTACATTCCTGCGT 356
||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCAAGACTACTGTTGATGTGATCGCTGAGCTACTTGGATTTAATGGCTACATTCCTGCGT 360
Query 357 ACAATGCTGTGAGTGGTCGGCAAATACTCTCCGGAGTTAACTACGCTTCCGCAGCTGCTG 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACAATACTGTGAGTGGTCGGCAAATACTCTCCGGAGTTAACTACGCTTCCGCAGCTGCTG 420
Query 417 GAATCCGAGAAGAAACCGGTCGACAATTGGGACAAAGGATAAGCTTTAGTGGGCAAGTTA 476
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 GAATCCGAGAAGAAACCGGTCGACAATTGGGACAAAGGATAAGCTTTAGTGGACAAGTTA 480
Query 477 GGAACTACCAGAACACGGTATCGCAAGTCGTGCAGCTGCTAGGAGACGAGACTCGTGCAG 536
|||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 481 GGAACTACCAGACCACAGTATCGCAAGTTGTGCAGCTTCTAGGAGACGAGACTCGTGCAG 540
Query 537 CTGATTACCTCAAGAGATGTATTTACTCTGTTGGTTTAGGAAGCAACGACTATCTCAACA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGATTACCTCAAGAGATGTATTTACTCTGTTGGTTTAGGAAGCAACGACTATCTCAACA 600
Query 597 ACTACTTCATGCCTACGTTTTACTCATCTAGCAGACAATTCACACCCGAACAATACGCTA 656
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 ACTACTTCATGCCTACGTTTTACTCTTCTAGCAGACAATTCACACCCGAACAATACGCTA 660
Query 657 ACGATCTCATCAGTCGCTACAGCACTCAGCTCAATGCACTATACAATTATGGGGCTCGAA 716
||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 661 ACGATCTCATCAGTCGCTACAGCACCCAGCTCAATGCATTATACAACTATGGGGCTCGAA 720
Query 717 AGTTTGCATTAAGCGGAATTGGAGCAATCGGCTGTAGTCCAAACGCACTAGCAGGCAGTC 776
|||||||||| || |||||||||||| | || |||||||| ||||| || ||||||||||
Sbjct 721 AGTTTGCATTGAGTGGAATTGGAGCAGTTGGTTGTAGTCCTAACGCGCTCGCAGGCAGTC 780
Query 777 CCGACGGAAGGACTTGCGTAGACCGCATCAACTCAGCAAACCAGATCTTCAACAACAAGC 836
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCGACGGTAGGACTTGCGTAGACCGCATCAACTCAGCAAACCAGATCTTCAACAACAAGC 840
Query 837 TAAGATCTCTTGTTGATCAGCTCAACAACAATCACCCTGATGCAAAGTTCATCTACATCA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TAAGATCTCTTGTTGATCAGCTCAACAACAATCACCCTGATGCAAAGTTCATCTACATCA 900
Query 897 ATGCTTATGGCATTTTCCAGGATATGATCACAAATCCTTCTAGATTTGGGTTTAGAGTGA 956
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 901 ATGCTTATGGCATTTTCCAGGACATGATCACAAATCCTGCCAGATTTGGGTTTAGAGTGA 960
Query 957 CGAACGCGGGCTGTTGCGGTATCGGGAGGAATGCTGGTCAGATTACATGTTTACCCGGAC 1016
|||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||||
Sbjct 961 CGAACGCGGGATGTTGCGGTATTGGGAGGAATGCTGGACAGATCACATGTTTACCGGGAC 1020
Query 1017 AGAGACCATGTAGAGACCGCAACGCGTACGTGTTCTGGGACGCATTTCACCCTACCGAAG 1076
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1021 AGAGACCGTGTAGAGACCGCAATGCGTACGTGTTCTGGGACGCATTTCACCCTACTGAAG 1080
Query 1077 CCGCAAATGTGATCATCGCAAGGAGATCGTTCAATGCACAATCAGCTTCAGACGCTTACC 1136
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1081 CCGCAAATGTGATCATCGCAAGGAGATCGTACAATGCACAATCGGCTTCAGACGCTTACC 1140
Query 1137 CTATGGATATTTCAAGGTTGGCACAGCTTTGAGGAAACAGAG-AAATATAATAATTATAC 1195
||||||||||||||||| |||||||||||||| |||||| || ||| |||| || || |
Sbjct 1141 CTATGGATATTTCAAGGCTGGCACAGCTTTGAAGAAACATAGTAAA-ATAAGAACTAAAG 1199
Query 1196 A-GTTCCACAAACCAATGTGTGATCTTGTTGTGTACCGTACCCCTTTTTAATATTTCCTT 1254
| |||||||||||||||||||||||||||||||||||||||| || ||||| |||| |||
Sbjct 1200 AAGTTCCACAAACCAATGTGTGATCTTGTTGTGTACCGTACCGCTATTTAAGATTTTCTT 1259
Query 1255 GACGTAATTGAAATCGAGTAAAACATTATTCTATATACATTCGATTTCTATA 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GACGTAATTGAAATCGAGTAAAACATTATTCTATATACATTCGATTTCTATA 1311
> AT1G29680.1 | Symbols: | Protein of unknown function (DUF1264)
| chr1:10377790-10378961 REVERSE LENGTH=854
Length=854
Score = 111 bits (60), Expect = 1e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 1241 TTTAATATTTCCTTGACGTAATTGAAATCGAGTAAAACATTATTCTATATACATTCGATT 1300
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TTTAAGATTTTCTTGACGTAATTGAAATCGAGTAAAACATTATTCTATATACATTCGATT 794
Query 1301 TCTATA 1306
||||||
Sbjct 793 TCTATA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5