BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473172
Length=2231
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29690.1 | Symbols: CAD1 | MAC/Perforin domain-containing pr... 3317 0.0
> AT1G29690.1 | Symbols: CAD1 | MAC/Perforin domain-containing
protein | chr1:10379020-10382123 REVERSE LENGTH=2238
Length=2238
Score = 3317 bits (1796), Expect = 0.0
Identities = 2101/2247 (94%), Gaps = 25/2247 (1%)
Strand=Plus/Plus
Query 1 AACCTAAGAATCTTCCTGATATCACTCAGaaaaaaaaaaaaaaaaagaaaaaaaaaaCAA 60
||||||||||||||| ||||||||||||| ||| ||||||| | || ||||||||
Sbjct 1 AACCTAAGAATCTTCTTGATATCACTCAG------AAAGAAAAAAA-ACAATAAAAACAA 53
Query 61 TGAAATCTCAAACGCGGTTTCTACGATTATTGTATAGTCAAAACCAGCAATGGTGTTGGT 120
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 54 TAAAATCTCAAACGCGGTTTCTACGATTTTTGTAGAGTCAAAACCAGCAATGGTGTTGGT 113
Query 121 AAGAGACT-----AAATCGATCGAAAGCTCAAAATCTCCATCTTCTTT-CCTCAGGAACT 174
|||| || ||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 114 GAGAGTCTAAAAAAAATCGATCGAAAGCTCAAAAACTCCATCTTCTTTCCCCCAGGAACT 173
Query 175 CACAAACCCTAGATTAGTTTGTT-ATCATCAATCATCCATTTCAAGATTTAATCTC-AAA 232
|||||||||||||| | ||||| ||||||||||||| ||||||||||||| |||| |||
Sbjct 174 CACAAACCCTAGATGA-ATTGTTAATCATCAATCATCGATTTCAAGATTTAGTCTCGAAA 232
Query 233 GGTTTTA-tttttttGT--TTGCGTCTTAAATGGAGAATCGTAAAGGAGGAAACTTTAGC 289
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 233 GGTTTTATTTTTTTTGTGCTTGCGTCTTAAATGGAGAATCGTAAAGGAGGAAACTTTAGC 292
Query 290 GTTCCTAGCTCCGAAGCTTTGACCACGACGCTCCGTAATGCGATCCAAGCTCTGGGTCGT 349
|| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 293 GTACCTAGCTCCGAAGCTTTGACCACGACGCTTCGTAATGCGATCCAAGCTTTGGGTCGT 352
Query 350 GGTTTCGATGTTACATCTGATGTTCGGCTTCTTTATTGCAAAGGAGCTCCTGGGTCAAGA 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GGTTTCGATGTTACATCTGATGTTCGGCTTCTTTATTGCAAAGGAGCTCCTGGGTCAAGA 412
Query 410 CTTGTTCGTATAGAAGAAGGACAAAACAGAGATCTTGAGTTGTCTGATGGGTATCTTCTT 469
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 413 CTTGTTCGTATAGAAGAAGGACAAAACAGAGATCTTGAGTTGTCTCATGGGTTTCTTCTT 472
Query 470 CCTAATGTTCCTGCTGATATTGAGTGTTCACGCGGCCGA-ATTGGCACTCAGAGAATCCC 528
|||||||| |||||||||||||| |||||||||||| | | |||||| || |||||| |
Sbjct 473 CCTAATGTCCCTGCTGATATTGACTGTTCACGCGGCA-ACAGTGGCACACAAAGAATCTC 531
Query 529 TGTCTGCAGCTTCCATCAGATGGCAGAATACTTCAATGAGATATCAGGTGTAAAGGGGAA 588
||| |||||||||||| ||||||||||| | ||||||| || |||||||||||| |||||
Sbjct 532 TGTTTGCAGCTTCCATGAGATGGCAGAAGAATTCAATGTGAGATCAGGTGTAAAAGGGAA 591
Query 589 CATACCACTCGGATGTTTTAACGCAATGTTCAATTACACGGGTTCTTGGCAAGTTGATGC 648
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 592 CATACCACTCGGATGCTTTAACGCAATGTTCAATTACACGGGTTCTTGGCAAGTAGATGC 651
Query 649 AGCATCCACAAAATCTCTTGCACTGGTTGGATTTTTTATCCCGCTTTATGAAGTCAAATT 708
||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 652 AGCATCCACTAAATCTCTTGCACTGGTTGGATATTTTATCCCGCTTTATGATGTCAAATT 711
Query 709 GGTAAATCTTAAATTGGATTTGCACAATGAGATCAGACGCGCTGTTCCTTCCTCATGGGA 768
| ||| |||| ||||| ||||||||||||||||||||| |||||||||||||| |||||
Sbjct 712 AGCAAAGCTTACATTGGTTTTGCACAATGAGATCAGACGTGCTGTTCCTTCCTCGTGGGA 771
Query 769 TCCCGCTTCCTTAGCTAGCTTTATTGAAAATTACGGCACTCATATTGTAACTTCGGTGAC 828
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TCCTGCTTCCCTAGCTAGCTTTATTGAAAATTACGGCACTCATATTGTAACTTCGGTGAC 831
Query 829 CATTGGTGGAAGAGACGTAGTTTACATTAGACAACATCAGTCTTCTCCTTTACCGGTATC 888
||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 832 CATTGGTGGAAGAGATGTAGTATACATCAGACAACATCAGTCTTCTCCTTTACCAGTATC 891
Query 889 TGAAATTGAAAACTATGTGAATGAGATGACGGAGCACAGGTTTCATGAAGCAGAGAGTCA 948
|||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||||
Sbjct 892 TGAAATAGAAAACTATGTGAATGACATGATAAAGCACAGATTTCATGAAGCAGAGAGTCA 951
Query 949 ATCTATTACCGGCCCCTTAAAATACAAAGACAAGGATATTACAGTAACATTTAGGCGAAG 1008
|||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||
Sbjct 952 ATCTATTACCGGCCCCTTGAAATACAAAGACAAGGATATCACAGTAATATTTAGGCGAAG 1011
Query 1009 AGGAGGCGATGATCTTGAGCAAAGCCATGCTCGATGGGCTGAGACAGTACCCGCAGCTCC 1068
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1012 AGGAGGCGACGATCTTGAGCAAAGCCATGCTCGTTGGGCTGAGACTGTACCCGCAGCTCC 1071
Query 1069 AGACATTATCAACATGACTTTTACTCCTATTGTTTCTCTGCTCAAAGGTGTGCCTGGTTT 1128
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1072 AGACATTATCAACATGACTTTTACTCCTATTGTTTCTCTCCTTGAAGGTGTGCCTGGTTT 1131
Query 1129 ACAACATCTGACTCGAGCTATCGATCTTTACTTGGAATATAAGCCTCCTATTGAAGATTT 1188
|| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1132 ACGGCATTTGACTCGTGCTATCGAACTTTACTTGGAATATAAGCCTCCTATTGAAGATTT 1191
Query 1189 ACAATATTTCTTGGATTTCCAAATAGCTCGAGCTTGGGCTCCCGAACAGAGTAACCTCCA 1248
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 ACAATACTTCTTGGATTACCAAATAGCTCGAGCTTGGGCTCCCGAACAGAGTAACCTCCA 1251
Query 1249 ACGTAAAGAACCTGTGTGTTCTTCTCTCCAATTCAGCTTAATGGGTCCGAAACTGTTCAT 1308
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 1252 ACGTAAAGAACCTGTGTGTTCTTCTCTTCAATTCAGCTTAATGGGTCCCAAACTATTCAT 1311
Query 1309 CAGTGCTGATCAGGTAACGGTTGGGCGTAAACCAGTCACAGGTCTCAGGCTGAGCTTAGA 1368
||| |||||||||||||| ||||||||||| || |||||||||||||| |||||||||||
Sbjct 1312 CAGCGCTGATCAGGTAACTGTTGGGCGTAAGCCGGTCACAGGTCTCAGACTGAGCTTAGA 1371
Query 1369 AGGAAGCAAACAAAACCGTCTCTCTATTCATTTACAACACTTAGTCTCTCTCCCCAAAAT 1428
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1372 AGGAAGCAAACAAAACCGTCTCTCTATCCATTTACAACACTTAGTCTCTCTCCCTAAAAT 1431
Query 1429 CATGCAGCCACACTGGGACTCTCACGTACCGATAGGTGCACCGAAATGGCAAGGACCAGA 1488
| |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1432 CCTGCAGCCACATTGGGACTCTCACGTGCCAATAGGTGCACCGAAATGGCAAGGACCAGA 1491
Query 1489 GGAGCAAGATAGCCGCTGGTTTGAGCCAATTAAATGGAAGAACTTCTCTCACGTAAGCAC 1548
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1492 GGAGCAAGATAGCCGCTGGTTCGAGCCAATCAAATGGAAGAACTTCTCTCACGTAAGCAC 1551
Query 1549 CTCGCCTATCGAACACACCGAGACCCACATCGGCGATCTCTCAGGCGTTCACATTGTCAC 1608
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1552 CTCACCTATCGAACACACAGAGACCCACATCGGCGATCTCTCCGGCGTTCACATTGTCAC 1611
Query 1609 CGGAGCTCAGCTCGGGGTTTGGGATTTCGGATCAAAAAACGTTTTGCATTTGAAACTACT 1668
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TGGAGCTCAGCTCGGGGTTTGGGATTTCGGATCAAAAAACGTTTTGCATTTGAAACTACT 1671
Query 1669 CTTCTCTAAAGTCCCCGGATGTACAATAAGACGGTCCGTCTGGGACCACACACCGGTTGC 1728
|||||||||||||||||| |||||||||||| ||||||||||||||||||| || |||||
Sbjct 1672 CTTCTCTAAAGTCCCCGGTTGTACAATAAGAAGGTCCGTCTGGGACCACACTCCCGTTGC 1731
Query 1729 TTCCTCAGGGAGACTGGAACCGGGAGGTCCATCTACATCGAGTTCGACCGAGGACGTGTC 1788
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1732 TTCCTCAGGGAGACTGGAACCGGGAGGTCCATCTACATCAAGTTCGACCGAGGAAGTGTC 1791
Query 1789 AGGGCAATCAGGGAAACTGGCCAAGATCGTGGATTCTTCAGAGATGTTGAAAGGACCACA 1848
|||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1792 AGGGCAATCAGGAAAACTGGCCAAGATTGTGGATTCGTCAGAGATGTTAAAAGGACCACA 1851
Query 1849 GGATTTGCCTGGACATTGGCTTGTCACTGGAGCAAAACTAGGCGTTGAAAAGGGTAAGAT 1908
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1852 GGATTTACCTGGACATTGGCTTGTCACTGGAGCAAAGCTAGGCGTTGAAAAGGGTAAGAT 1911
Query 1909 TGTATTGCGTGTGAAGTATTCGTTGCTAAATTATTGAGAGATTT-AGATGAGTTCTTGTT 1967
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1912 TGTATTGCGTGTGAAGTATTCGTTGCTAAATTATTGAGAGATTTTAGATGAGTTCTTGTT 1971
Query 1968 TTTCCGGCGGCCGGGAAATTTTTCCGTCAGCATTCTTTGCACAGCGAATCATTCTTGTAC 2027
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 TTTCCGGCGGCCGGGAAAGTTTTCCGTCAGCATTCTTTGCACAGCGAATCATTCTTGTAC 2031
Query 2028 ATGTTTCGGTTGCTTATGGGAACCGTTTGGTTCGGTTCTGTTCGACACGAgtttggtttg 2087
||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct 2032 ATGTTTCGGTTGCTTATGGGAACCGTTTGGTTCTGTTCGGTTTGACACGAGTTTGGTTTG 2091
Query 2088 gttgattttaaatttttgtccggtttggttttgtagacgattttATTAAATCAGATATGT 2147
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2092 GTTGATTTTTAATTTTGGTCCGGTTTGGTTTTGTAGACGATTTTATTAAATCAGAGCTGT 2151
Query 2148 AAATT-GTAGTCGGAT-T-CAACACATGGTCGATGTACGGCCATTTCGTAACACGTTTCT 2204
||||| ||||| |||| | |||||||||||||||||| | || |||||| ||||||||||
Sbjct 2152 AAATTTGTAGTGGGATATTCAACACATGGTCGATGTATGCCCGTTTCGTGACACGTTTCT 2211
Query 2205 ATGAGATATGAATGCCATGTATCATAT 2231
|||| ||||| ||||||||||||||||
Sbjct 2212 ATGAAATATGCATGCCATGTATCATAT 2238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110692201725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5