BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473173
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29700.1 | Symbols: | Metallo-hydrolase/oxidoreductase supe... 1916 0.0
> AT1G29700.1 | Symbols: | Metallo-hydrolase/oxidoreductase superfamily
protein | chr1:10384981-10387441 REVERSE LENGTH=1356
Length=1356
Score = 1916 bits (1037), Expect = 0.0
Identities = 1232/1321 (93%), Gaps = 33/1321 (2%)
Strand=Plus/Plus
Query 17 CAAACAG--TCTC-TCGACTCTAAAATCAGGTGGCAAAACAAAATCAATGGCTCTGGTGG 73
||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 42 CAAACAGTCTCTCTTCAACTCTAAAATCAGGTGGCAAAACAAAATCAATGGCTCTAGTGG 101
Query 74 TGTCAGGTGGCAAAGCAGCCACGATGCCGCTTCATGCCAATGCTCTTCCTCTAAGTATCA 133
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 102 TGTCAGGTGGCAAAGCAGCCATGATGCCGCTTCATGCCAATTCTCTTCCTCTAAGTATCA 161
Query 134 ACACCAAAGCAAGAG-ACCTAAGCGCATCTGCATTTCCGCTATTCTCGTCCACTCCTCAC 192
|||||||| |||||| | ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 162 ACACCAAATCAAGAGTA-CTAAGTGCATCAGCATTTCCACTATTCTCGTCCACTCCTCAC 220
Query 193 CTCCCTTCCAGATCCCTCTCCATCCGCCTCTCGCCGAATGTTTCCCGCTCTCTCACTGTG 252
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 221 CTCCCTTCCAGATCCCTCTCCATCCGCCTCTCGCCGAATGTTTCCCGGTCTCTCACTGTG 280
Query 253 GTATCTTCTGTATTGTCAGAGGACAGAGCTACCGGGGTTAGTGGCTCTGGGACAGATGCA 312
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 281 GTATCTTCTGTTTTGTCAGAGGACAGAGCTACTAACGTTAGTGGCTCTGGGACAGATGCA 340
Query 313 TTCAAGCTGACTTACTTGGAGGGCAATAGCTGGCTATGGGAGACAGGTGGATTGAAAATC 372
||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 341 TTCAAGCTGACTTACTTGGAGGGCAATAGCTGGCTATGGGAAACAGCTGGACTGAAAATC 400
Query 373 CTAGTTGATCCGATTCTCGTGGGTAATTTGGACTTTGGAATCCCATGGCTTTATGATGCT 432
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 CTAGTTGATCCGATTCTTGTGGGTAATTTGGACTTTGGAATCCCATGGCTTTATGATGCT 460
Query 433 GCCAAGAGATATTTGAAGGGCTTCAAGCTTGATGATCTCCCTGAAGTTGATTGCCTGCTC 492
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 461 GCCAAGAGATATTTGAAGGCCTTCAAGCTTGATGATCTCCCTGAAGTTGATTGCCTTCTC 520
Query 493 ATAACTCAAAGCCTTGATGATCATTGTCATTTGAATACCCTTAGGCCACTTTCTGAGAAA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 521 ATAACTCAAAGCCTTGATGATCATTGTCATTTGAATACCCTTAGGCCACTTTCCGAGAAA 580
Query 553 TCTCCAGGCATAAAGGTTATTGCAACTCCAAATGCAAAGCCTTTGCTCGATCCTCTTTTT 612
|||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||
Sbjct 581 TCTCCAGGCATAAAGGTTATAGCAACCCCAAATGCTAAGCCTTTGCTAGATCCTCTTTTT 640
Query 613 AGAAACGTCACCTATCTGGAACCTGGAGATAGCTATGAGCTAAATGGAAGAAACGGTTCT 672
|| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 641 AGTAACGTCACTTATCTGGAACCTGGAGATAGCTTTGAGCTAAATGCAAGAAACGGTTCT 700
Query 673 AAGGTTCGAGTTAAAGCCACAGCAGGACCTGTCCTCGGTCCACCATGGCAACGCCCTGAA 732
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 701 AAGGTTCGAGTTAAAGCCACAGCTGGACCTGTCCTTGGTCCACCGTGGCAACGCCCTGAA 760
Query 733 AACGGGTATCTCCTTGTATCCTCTGAAGATCAGATATCTCTCTACTACGAACCACATTGT 792
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 761 AACGGGTATCTCCTTGTATCCCCTGAAGATCAGATATCTCTCTACTATGAACCGCATTGT 820
Query 793 GTATGCAACATGGAACTTCTGAAGAATGAAAGAGCCGACATTGTAATCACACCGGTCATC 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GTATGCAACATGGAACTTCTGAAGAATGAAAGAGCCGACATTGTAATCACACCGGTCATC 880
Query 853 AAACAACTTCTCCCACGATTTACTCTTGTTTCTGGTCAAGAAGACGCTGTCCTGATCGCC 912
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 881 AAACAACTTCTCCCACGATTTACTCTTGTTTCTGGTCAAGAAGACGCTGTCCAGCTTGCC 940
Query 913 AAACTCTTGAAAGCCAAGTTTGTTGTGCCGATGCAAAATGGCGAGCTTGAAGCAAAGGGA 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 AAACTCTTGAAAGCCAAGTTTGTTGTGCCGATGCAAAATGGCGAGCTTGAAGCAAAGGGA 1000
Query 973 CTTTTAGCCAGCATAATAAAGAAAGAAGGAACTATTGAATCATTTAAGGAGTTATTGTTA 1032
|||||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1001 CTTTTAGCAAGCCTAGTAAAGAAAGAAGGAACTATTGAATCATTTAAGGAATTATTGTTA 1060
Query 1033 AAAGAGCTCCCAGAAGCTCAAGTATTGGAGCCTATAGCAGGTATACCGCTAGAGATCTTG 1092
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1061 AAAGAGCTCCCAGAAGCTCAAGTGTTGGAGCCTATAGCAGGTATACCGCTAGAGATCTTG 1120
Query 1093 GCTCCATCTTCAGACATTTAGAAAGTAAACGGTACATGAGAGGATACACAT--GTAAATA 1150
| |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1121 GTTCCATCTTCAGACATTTAGAAAGTAAACTGTACATGAGAGTATACACATATGTAAATA 1180
Query 1151 TGCACATGTGAAATGAAGCTTTTTAGATGAAAGGTAACAGTGGAGAAGAGGAGAGAT-TT 1209
| ||||||||||||||| ||||||||| || | |||| ||||||||||||||||||| ||
Sbjct 1181 TACACATGTGAAATGAAACTTTTTAGAGGAGATGTAATAGTGGAGAAGAGGAGAGATATT 1240
Query 1210 -----T--G-----G-A-GG-T-TTT-GTATACGTTGATCTATTTAAAGATTATTTCATA 1252
| | | | || | ||| ||||| ||||||||||||||||||||||||||
Sbjct 1241 GGAGGTATGACTAAGGACGGATATTTTGTATATGTTGATCTATTTAAAGATTATTTCATT 1300
Query 1253 TAAGGAGGTACTTTTAGAATAATTAATGTATCATACTAATAAATTAGTGACATGTTCCAG 1312
||||| | | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1301 TAAGG---T--TG---GAATAATTAATGTATCATAATAATAAATTAGTGACATGTTCCAG 1352
Query 1313 T 1313
|
Sbjct 1353 T 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64608101415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5