BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473178
Length=3249
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29750.2 | Symbols: RKF1 | receptor-like kinase in flowers 1... 5206 0.0
> AT1G29750.2 | Symbols: RKF1 | receptor-like kinase in flowers
1 | chr1:10413881-10420524 REVERSE LENGTH=3311
Length=3311
Score = 5206 bits (2819), Expect = 0.0
Identities = 3127/3273 (96%), Gaps = 32/3273 (1%)
Strand=Plus/Plus
Query 1 GATTTATCATTTTCGATGAGACATTGATTTACAGAGATATTTTTGTTGCAATGATATCTC 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 6 GATTTATCATTTTCGATGAGACATTGTTTTACAGAGATATTTTTGTTGCAATGATATCTC 65
Query 61 TGTATCAAATGTTGGCCGagaagaagaagaagaagaagaagaaagaTGTTAACATCTTTG 120
|||||||||| |||||||||||||||||||||||| | || || ||| ||||||||||||
Sbjct 66 TGTATCAAATATTGGCCGAGAAGAAGAAGAAGAAG-A-AA-AATGATCTTAACATCTTTG 122
Query 121 CAATTTT-TGTTTTTGCCATCATCTGCTTCAAATTTTACAGTATTAATGCTATCAAATTA 179
| ||||| ||||||||||||||| |||||||||||||| ||| | |||||||||||||||
Sbjct 123 C-ATTTTCTGTTTTTGCCATCATTTGCTTCAAATTTTATAGTGTAAATGCTATCAAATTA 181
Query 180 CCGCAGCAAGAAGTCGATGCTCTGCAACAAATCGCAACCACATTGGGATCGAAATTCTGG 239
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 182 CCGCAGCAAGAAGTCGATGCTCTGCAGCAAATCGCTACCACATTGGGCTCGAAATTCTGG 241
Query 240 AAATTTGATGCTGAAAATTGTAAGATTGAGATGGTGGGGTTAACTGAAACTCCTCCTCCA 299
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 242 AAATTCGATGCTGAAAATTGTAAGATTGAAATGGTGGGGTTAACTGAAACTCCTCCTCCA 301
Query 300 ACAGCTAAGCAAGAAATAGAATGTGAATGCAGTCCCACTAACGACACTGATTGTCATATT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 302 ACAGCTAAGCAAGAAATAGAATGTGAATGCAGTCCCACTAACGACACTGATTGTCATGTT 361
Query 360 GTGAAATTTGCATTCAAGGAGCATAATCTTCCAGGAACTCTTCCTCAAATAGTCAAGCTT 419
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 362 GTCAAATTTGCATTCAAGGACCATAATCTTCCAGGAACTCTTCCTCAAATAGTCAAGCTT 421
Query 420 CCCTACCTTCGGGAGATAGACTTGGCCTACAACTACATCAATGGGACCTTACCTCGTGAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CCCTACCTTCGGGAGATAGACTTGGCCTACAACTACATCAATGGGACCTTACCTCGTGAA 481
Query 480 TGGGCTTCTTCAAATTTGACTTTTATCTCTCTTCTTGTGAACCGGTTGTCAGGGGAAATT 539
||||||||||||||||| |||||||| |||||||||||||| |||||||| || ||||||
Sbjct 482 TGGGCTTCTTCAAATTTAACTTTTATTTCTCTTCTTGTGAATCGGTTGTCTGGAGAAATT 541
Query 540 CCGAAAGAGTTCGGAAACTCTTCTACACTAACATATTTGGATCTCGAGTCAAATGAGTTT 599
||||| ||||| |||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct 542 CCGAAGGAGTTTGGAAACTCTTCT---CTAACATACTTGGATCTCGAGTCAAATGCGTTT 598
Query 600 TCTGGAACTATTCCTCAGGAGCTTGGGAACTTAGTCCACTTGAAAAAACTGTTGCTTTCC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTGGAACTATTCCTCAGGAGCTTGGGAACTTAGTCCACTTGAAAAAACTGTTGCTTTCC 658
Query 660 TCTAACAAATTGACGGGAACTTTGCCAGCTTCACTAGCTAGACTACAGAATATGACAGAT 719
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCTAACAAATTGACCGGAACTTTGCCAGCTTCACTAGCTAGACTACAGAATATGACAGAT 718
Query 720 TTCAGGATTAACGATCTTCAACTAAGTGGAATGATACCTAGTTACTTACAAAATTGGAAG 779
||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct 719 TTCAGGATTAACGATCTTCAACTCAGTGGAACGATACCTAGTTACATACAAAATTGGAAG 778
Query 780 CAACTCGAGAGACTTGAAATGATTGCATCTGGTCTCACTGGTCCAATCCCATCGGTCATC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAACTCGAGAGACTTGAAATGATTGCATCTGGTCTCACTGGTCCAATCCCATCGGTCATC 838
Query 840 TCAGTTCTGAGCAATCTTGTTAATCTGAGGATCAGTGATATACGTGGACCAGTCCAACCA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCAGTTCTGAGCAATCTTGTTAATCTGAGGATCAGTGATATACGTGGACCAGTCCAACCA 898
Query 900 TTCCCTTCGTTGAAGAACGTGACAGGTTTAGTTAAACTTATATTGAAGAACTGTAACATT 959
||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 899 TTCCCTTCGTTGAAGAACGTGACAGGTCTAACTAAAATTATATTGAAGAACTGTAACATT 958
Query 960 TCTGGACAAATTCCTACTTATCTTTCAAATTTGAAGGAGTTGGAGACACTGGATTTGAGT 1019
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 959 TCTGGACAAATTCCTACTTATCTTTCACATTTGAAGGAGTTGGAGACACTGGATTTGAGT 1018
Query 1020 TTTAACAAGTTGGTTGGGGGAATTCCGTCGTTTGCACAAGCAGAAAATTTACGGTTTATA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTTAACAAGTTGGTTGGGGGAATTCCGTCGTTTGCACAAGCAGAAAATTTACGGTTTATA 1078
Query 1080 ATTTTGGCTGGTAATATGCTCGAGGGAGATGCTCCAGATGAATTACTAAGAGATGGAATC 1139
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATTTTGGCTGGAAATATGCTCGAGGGAGATGCTCCAGATGAATTACTAAGAGATGGAATC 1138
Query 1140 ACACTAGATCTTTCATATAACAATCTGAAGTGGCAGAGTCCTGAAAGTCGTGCTTGTCGC 1199
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1139 ACAGTAGATCTTTCATATAACAATCTCAAGTGGCAGAGTCCTGAAAGTCGTGCTTGTCGC 1198
Query 1200 CCAAATATGAATCTGAATCTAAACTTGTTTCAGAGCACTTCGACaaaaaaaTCGAGCAAA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CCAAATATGAATCTGAATCTAAACTTGTTTCAGAGCACTTCGACAAAAAAATCGAGCAAA 1258
Query 1260 TTTCTGCCGTGTATCAAAGATTTCAAATGTCCTCGATATTCTAGCTGCTTGCATGTGAAC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTTCTGCCGTGTATCAAAGATTTCAAATGTCCTCGATATTCTAGCTGCTTGCATGTGAAC 1318
Query 1320 TGCGGTGGAAGCGATATATATGTAAAGGAGaaaaaaaCAAAAGAATTATATGAAGGAGAT 1379
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGCGGTGGAAGCGATATGTATGTTAAGGAGAAAAAAACAAAAGAATTATATGAAGGAGAT 1378
Query 1380 GGAAATGTTGAAGGTGGTGCTGCTAAGTATTTTTTGAAGCCTGACGCTAATTGGGGATTT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGAAATGTTGAAGGTGGTGCTGCTAAGTATTTTTTGAAGCCTGACGCTAATTGGGGATTT 1438
Query 1440 AGCAGTACAGGGGACTTCATGGACGACAACAATTTCCAAAACACTAGATTCACCATGTTT 1499
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1439 AGCAGCACAGGGGACTTCATGGACGATAACAATTTCCAAAACACTAGATTCACCATGTTT 1498
Query 1500 GTCCCGGCATCTAACCTGTCTGATCTCTACAAATCGGCACGAATAGCTCCAGTATCTCTA 1559
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1499 GTCCCGGCATCTAACCAGTCTGATCTCTACAAATCGGCACGAATTGCTCCAGTATCTCTA 1558
Query 1560 ACTTACTTCCATGCCTGCCTGGAAAATGGAAACTACACTATAAATCTGGACTTTGCTGAG 1619
|||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1559 ACTTACTTCCATGCCTGCTTGGAAAATGGAAATTACACTATAAATCTAGACTTCGCTGAG 1618
Query 1620 ATGCGGTTCACCAATGATGAAAACTATAGCCGGCTTGGAAGGCGTCTGTTTGACATTTAC 1679
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1619 ATACGGTTCACCAATGATGAAAACTATAACCGGCTTGGAAGGCGTCTGTTTGACATTTAC 1678
Query 1680 ATTCAGGAGAAATTAGTGGCAAAGGACTTCAACATCATGGATGAAGCAAAGGGAGCTCAA 1739
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1679 ATTCAGGAGAAATTAGTGGCAAAGGACTTTAACATCATGGATGAAGCAAAGGGAGCTCAA 1738
Query 1740 ACACCTATAATCAAACCATTTACTGCCTATGTGTCAAACCACTTTTTAACCATCCGGTTG 1799
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1739 ACACCTATAATCAAACCACTTACTGCCTATGTGACAAACCACTTTTTAACCATCCGGTTG 1798
Query 1800 AGTTGGGCCGGTAAAGGAACTACCAGGATTCCCACTAGAGGGGTTTATGGTCCTCTCATA 1859
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1799 AGTTGGGCCGGTAAAGGAACTACCAGGATTCCCACTAGAGGGGTTTATGGTCCTATCATA 1858
Query 1860 TCGGCTATTTCCATAGTTTCAGATTCTAAGCCGTGCGAACGTCCGGAAACTGGAATGAGC 1919
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1859 TCGGCTATTTCCATAGTTTCAGATTCCAAGCCGTGCGAACGTCCGAAAACTGGAATGAGC 1918
Query 1920 CCTGGAGCATATATTGCAATTGGAGTTGGAGCACCATGCCTTATTATCTTTATAGTGGGA 1979
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct 1919 CCTGGAGCATATATTGCAATTGGAATTGGAGCACCATGTCTTATTATCTTTATACTGGGA 1978
Query 1980 ATTCTGTGGATGTGTGGCTGCCTCCCAAGATGTGGTCAACGACGAAAAGATCCCTATGAA 2039
|||||||||| ||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 1979 TTTCTGTGGATATGTGGCTGCCTCCCAAGATGTGGTCGACAACGAAAAGATCCGTATGAA 2038
Query 2040 GAAGAGTTGCCTTCTGGAACTTTTACATTAAGGCAAATTAAATTTGCTACAGATGACTTC 2099
||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||
Sbjct 2039 GAAGAGTTGCCTTCTGGAACTTTTACATTGAGGCAAATCAAATTCGCTACGGATGACTTC 2098
Query 2100 AATCCAACTAACAAGATTGGAGAAGGTGGTTTCGGTCCAGTGTTTAAGGGTGTGTTAGCA 2159
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 2099 AATCCAACTAACAAGATTGGAGAAGGTGGTTTCGGTGCTGTCTTTAAGGGTGTGTTAGCA 2158
Query 2160 GATGGAAGAGTTGTAGCAGTCAAGCAACTCTCATCTAAATCGAGACAAGGGAACCGAGAA 2219
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2159 GATGGAAGAGTTGTAGCAGTTAAGCAACTCTCATCTAAATCGAGACAAGGGAACCGAGAA 2218
Query 2220 TTTCTAAACGAGATAGGCGCAATTTCTTGTCTTCAACATCCAAATCTCGTCAAGCTTCAT 2279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 TTTCTAAACGAGATAGGCGCAATTTCTTGTCTTCAACATCCAAATCTCGTCAAGCTTCAT 2278
Query 2280 GGCTTCTGCGTTGAGCGGGCTCAGCTATTACTGGTGTACGAATACATGGAAAATAACAGT 2339
|| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2279 GGTTTCTGCGTCGAGCGGGCTCAGCTATTACTGGCGTACGAATACATGGAAAATAACAGT 2338
Query 2340 TTATCTAGCGCGTTATTCAGTCCAAAGCATAAACAGATTCCAATGGACTGGTCTACTAGG 2399
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 2339 TTATCTAGCGCGTTATTCAGTCCAAAGCATAAACAGATACCAATGGACTGGCCTACTAGG 2398
Query 2400 TTTAAGATTTGCTGCGGGATCGCAAAGGGTCTCGCGTTTCTCCATGAGGAATCACCGTTG 2459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 TTTAAGATTTGCTGCGGGATCGCAAAGGGTCTCGCGTTTCTCCATGAGGAATCACCGTTG 2458
Query 2460 AAGTTTGTACACAGAGACATTAAGGCCACAAATATTTTATTGGACAAGGATTTAACTCCC 2519
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2459 AAGTTTGTACATAGAGACATCAAGGCCACAAATATTTTATTGGACAAGGACTTAACTCCC 2518
Query 2520 AAGATATCTGATTTCGGATTGGCTAGGCTTGACGAAGAGGAGAAAACACACATCAGCACC 2579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2519 AAGATATCTGATTTCGGATTGGCTAGGCTTGACGAAGAGGAGAAAACACACATCAGCACC 2578
Query 2580 AAAGTCGCCGGGACTATAGGATATATGGCGCCAGAATACGCACTGTGGGGTTACTTAACT 2639
||||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 2579 AAAGTTGCTGGGACTATAGGATATATGGCACCAGAATACGCACTGTGGGGCTACCTAACT 2638
Query 2640 TTCAAAGCAGATGTCTACAGTTTTGGTGTTTTGGTTCTAGAGATCGTCGCTGGCATAACC 2699
|||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||
Sbjct 2639 TTCAAAGCAGATGTCTACAGCTTCGGTGTTTTGGTTCTAGAAATCGTCGCCGGCATAACC 2698
Query 2700 AACAGTAATTTCATGGGGGCAGGAGATTCCGTTTGCCTCTTGGAATTTGCTAACGAGTGC 2759
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2699 AACAGTAATTTCATGGGGGCAGGAGATTCCGTTTGCCTCTTAGAATTTGCTAACGAGTGC 2758
Query 2760 GTAGAATCAGGGCACTTGATGCAAGTAGTGGATGAGAGATTGAGGCCTGAAGTGAACAGA 2819
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 2759 GTAGAATCGGGGCACTTGATGCAAGTAGTGGATGAGAGGTTGAGGCCTGAAGTGGATAGA 2818
Query 2820 AAAGAAGCAGAGGCGGTTATAAAAGTGGCTCTCGTGTGCTCGAGCGCTTCTCCAACAGAT 2879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2819 AAAGAAGCAGAGGCGGTTATAAAAGTGGCTCTCGTGTGCTCGAGCGCTTCTCCAACAGAT 2878
Query 2880 CGTCCTATAATGTCAGAGGTCGTTGCTATGCTCGAAGGTCTATATCCAGTGCCAGAATCA 2939
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2879 CGTCCTTTAATGTCAGAGGTCGTTGCTATGCTAGAAGGTCTATATCCAGTGCCAGAATCA 2938
Query 2940 ACCCCAGGAGTAAGCAGGAACTCAGGGGATATAAGGTTTAAGGCGTTTAAAGATTTAAGG 2999
|| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2939 ACACCAGGAGTAAGCAGGAACGCAGGGGATATAAGGTTTAAGGCATTTAAAGATTTAAGG 2998
Query 3000 AGAGGCATGGAGAACAATAGTAAGACGCAGTGTTCTGTTAAAAGTTATCCGTCTTCTTCT 3059
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2999 AGAGGCATGGAGAACAATAGTAAGACGCAGTGTTCTGTTAAAAGCTATCCGTCTTCTTCT 3058
Query 3060 TCGTCTTCGTCTGGGGCAGGACAAGTAGTTCAAGAAAGAAAGAAAGAAGAGTCAAGGTCT 3119
||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 3059 TCGACTTCTTCTGGGGCAGGACAAGCAGTTCAAGAAAGAAAGAAAGAAGAGTCAAGGCCT 3118
Query 3120 TGAAGTGATATCCAATTCCTTCCCTCTCttttttttt-----GTAAAATGT-T-T----A 3168
||||| | | | ||| |||||||||||||||||||| ||||||||| | | |
Sbjct 3119 TGAAGAGGTTTTGAAT-CCTTCCCTCTCTTTTTTTTTTTTTTGTAAAATGTCTGTCTTTA 3177
Query 3169 -T-----G---A-G--TTCATTCCATGATTAGTCATTTACAGTAATTCCCCATATTTGTA 3216
| | | | || |||| ||||||||||||||| |||||||||||||| ||||
Sbjct 3178 GTAAAATGTTTATGAGTTTATTCTGTGATTAGTCATTTACTGTAATTCCCCATATCTGTA 3237
Query 3217 TTTAGGTTCTTTTAGTTGGGGATTGAATGTTGT 3249
|||||||||| ||||||||||||||||||||||
Sbjct 3238 TTTAGGTTCTGTTAGTTGGGGATTGAATGTTGT 3270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161637890346
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5