BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473180
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29770.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1869 0.0
AT1G29780.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 268 7e-71
> AT1G29770.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:10424576-10425801 FORWARD
LENGTH=1226
Length=1226
Score = 1869 bits (1012), Expect = 0.0
Identities = 1155/1223 (94%), Gaps = 13/1223 (1%)
Strand=Plus/Plus
Query 1 AAAACTGTTATTTTGCTAAAAATAACTCAGCTTATAAATCACGACCTGAATAAACTGAAC 60
|||||||||||||| ||||||||||||||| | |||||| |||||||||||||||||
Sbjct 11 AAAACTGTTATTTTACTAAAAATAACTCAG-AGCT-AATCACAACCTGAATAAACTGAAC 68
Query 61 TCTACCAAATCAAGTACTCTTCTGTTCCAAAGCCAGTAGCATGGAAGTTAGAACCTTTAA 120
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 69 TCTACCAAATCAAGTCCTCTTCTGTTCCAAAGCCAGTAGCTTGGAAGTTAGAACCTTTAA 128
Query 121 AGCATTATAAACATCTCACCATTTCTCCAGGTTTCCATCTGAGCCAGCTGCAGAAAAGAA 180
||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 129 AGCATTATAAACATCTCACAATTTCTACAGGTTTCCATCTGAGCCAGCTGCACAAAAGAA 188
Query 181 CCCGGAATTCTTTA-CAACGTTTTGAACTCTGATTTCTTGATAATGGCGTGCCATGGATT 239
|||||||||| | | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 189 CCCGGAATTC-TCATCAACGTTTTGAACTCTGATTTCTTGATAATGGCGTGTCATGGATT 247
Query 240 TCTGGGGAAACCGACCCCAAAATCATTTGGGCG---TCATAAACATGCATGGAGAAACC- 295
||||||||||||||| || |||||||||||||| ||||||||||||| ||| |||||
Sbjct 248 TCTGGGGAAACCGACGCCGAAATCATTTGGGCGTCATCATAAACATGCAAGGAAAAACCG 307
Query 296 GACATCATCAATCCAGATGTTCGGCTGCGGCCGTTGCAGCAGCTGGCTCCATCTTCACAT 355
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 308 GA-ATCATCAATCCAGATGTTTGGCTGCAGCCGTTGCAGCAGCTGGCTCCATCTTCACAT 366
Query 356 CCCTCAACATGTCTATCTTCACATTCCACAACCGCCTCTTGCGTTGCGTCTCCAGGTTTT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CCCTCAACATGTCTATCTTCACATTCCACAACCGCCTCTTGCGTTGCGTCTCCAGGTTTT 426
Query 416 TCCGTCTAGCCACCACATCTAGCGCAACTCCTAGCCATCGAGCCACCATGAAACAAGGCT 475
| ||||| ||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 427 TGCGTCTCGCCACCACATCTAGCGCAACTCCTACCCGTCGACCCACCATGAAACAAGGCT 486
Query 476 ACAAAAAGCTCCAGAAAC-CTGAGCCTCTGAGAAGACGTAATGACAAGAAAAGGACGATC 534
||||||| ||||| |||| | |||||||||| |||||||||||||||||||||||| |||
Sbjct 487 ACAAAAAACTCCATAAACGC-GAGCCTCTGATAAGACGTAATGACAAGAAAAGGACAATC 545
Query 535 TTTCTTGATCTTGATGAAACATTGGTGCACTCTACAATGGAACCACCAATCCGGGTTAAT 594
|||||||||||||| ||||||||||| || || || ||||||||||||||||||||||||
Sbjct 546 TTTCTTGATCTTGACGAAACATTGGTACATTCAACGATGGAACCACCAATCCGGGTTAAT 605
Query 595 GTAGATTTCATGGTGAGGATAAAGATCGAAGGAGCCGTTATACCAATGTTTGTGGTGAAA 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 606 GTAGATTTCATGGTGAGGATAAAGATCGAAGGAGCCGTTATACCAATGTTTGTGGTAAAA 665
Query 655 CGACCAGGAGTTACTGAGTTTCTTGAAAGGATTAGTAAGAACTATCGAGTGGCAATCTTC 714
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 666 CGACCAGGAGTTACTGAGTTTCTTGAAAGGATCAGTAAGAACTATCGAGTGGCAATCTTC 725
Query 715 ACAGCCGGGTTACCGGAATATGCTTCACAGGTTTTGGATAAACTTGACAAGAACCGTGTG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 726 ACAGCCGGGTTACCGGAATATGCTTCACAGGTTTTGGATAAACTTGACAAGAATCGTGTG 785
Query 775 ATCTCACAGCGGCTATATCGAGATTCATGCACAGAAATGAATGGAAGATATGCCAAAGAC 834
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 786 ATCTCACAGCGGCTATATCGAGATTCATGCACAGAAGTGAATGGAAGATATGCCAAAGAC 845
Query 835 TTATCTTTGGTGGCAAAAAATGACCTCGGGAGTGTTTTGATAGTTGATGATAACCCTTTC 894
|||||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 846 TTATCTTTGGTGGCGAAGAATGACCTCGGGAGTGTTTTGCTAGTTGACGATAACCCTTTC 905
Query 895 TCCTACTCGTTGCAGCCAGACAATGGAGTTCCCATTAAGCCATTTGTGGATGACATGGAA 954
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 906 TCCTACTCGTTGCAGCCAGACAATGGAGTTCCCATTAAGCCATTTATGGATGACATGGAA 965
Query 955 GATCAAGAACTGATGAAACTTGCAGAATTCTTCGATGGATGTTATCAGTACGAAGATCTA 1014
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 GATCAAGAACTAATGAAGCTTGCAGAATTCTTCGATGGATGTTATCAGTACGAAGATCTA 1025
Query 1015 AGGGACGCAGCAGCAGAACTTCTATCCAGCAAGCTGATTTGATGCACATATATATGAAAT 1074
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1026 AGGGATGCAGCAGCAGAACTTCTATCCAGCAAGCTGATTTGATGCACATATATATGGAAT 1085
Query 1075 TTGTTTGCAGAACCTGttttcaatttttttgggattctttctttctttttcttgattttc 1134
|||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||| |||
Sbjct 1086 TTGTTTGCAGAACCTGTTTTCAATCTTTT-GGGATTCTTTCTATCTTTCTCTTGATCTTC 1144
Query 1135 tttGGGGAGAGATGATACAGCCTAACGGTATTTTTATGTTGAAAAAGGATGCTTCCTTAT 1194
||||||||| |||| ||||| | ||||||||||| ||||||||||||||||| ||||||
Sbjct 1145 TTTGGGGAGGGATGGTACAGAGTGACGGTATTTTTGTGTTGAAAAAGGATGCT-CCTTAT 1203
Query 1195 CCTTCTTCAGCGTTTTTACCTAC 1217
|||||||||||||||||||||||
Sbjct 1204 CCTTCTTCAGCGTTTTTACCTAC 1226
> AT1G29780.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:10426950-10427615 FORWARD
LENGTH=666
Length=666
Score = 268 bits (145), Expect = 7e-71
Identities = 406/526 (77%), Gaps = 41/526 (8%)
Strand=Plus/Plus
Query 518 ACAAGAAAAGGACGATCTTTCTTGATCTTGATGAAACATTGGTGCACTCTACAATGGAAC 577
||| ||||||||| ||| | || |||||||||||||| ||||| ||| | |||| |
Sbjct 140 ACATGAAAAGGACAATCATCCTCGATCTTGATGAAACGTTGGTTCACGCAACAA---CA- 195
Query 578 CACCAATCC-GG-GTT-AATGTAGATTTCATGGTGA-GGAT-AAAGATCG-AA-GGAGCC 630
|| | ||| || ||| || | ||||||||||||| || | ||| || | || ||||
Sbjct 196 CATC-TTCCGGGAGTTAAACAT-GATTTCATGGTGATGG-TGAAA-ATGGAAAGGGAG-- 249
Query 631 GTTATACCAATGTTTGTGGTGAAACGACCAGGAGTTACTGAGTTTCTT-GAAAGGA-TTA 688
| || ||||| |||||||||||||| || || || ||||| ||||| |||| || ||
Sbjct 250 ATAATGCCAATCTTTGTGGTGAAACGTCCTGGTGTGACTGA-ATTCTTGGAAA-GACTTG 307
Query 689 GT-AAGAACTATC-GAGTGGCAATCTTCACAGCCGGGT-TACCGGAATATGCTTCACAGG 745
|| || ||||| | ||||| | | ||||||| | ||| | ||||||||||||||||
Sbjct 308 GTGAA-AACTA-CAAAGTGGTAGTTTTCACAG-CTGGTCTGGAAGAATATGCTTCACAGG 364
Query 746 TTTTGGATAAACTTGACAAGAACCGTGTGATCTCACAGCGGCTATATCGAGATTCATGCA 805
||||||| || || ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 365 TTTTGGACAAGCTAGACAAGAACGGTGTGATCTCACAGCGGCTATATCGAGACTCATGCA 424
Query 806 CAGAAATGAATGG-AAGATATGCCAAAG-ACTTATCTTTGGT-G-GCAAAAAATGACCTC 861
| || |||| || || ||||| |||| ||||||||||||| | | ||| ||||||
Sbjct 425 CGGAGGTGAACGGGAA-ATATGT-AAAGGACTTATCTTTGGTAGTGGGGAAA--GACCTC 480
Query 862 GGGAGTGTTTTGATAGTTGATGATAACCCTTTCTCCT-ACTCGTTGCAGCCAGACAATGG 920
| |||| |||||| || ||||| || || | || || |||| || |||||||| |||||
Sbjct 481 AGAAGTGCTTTGATTGTCGATGACAATCCAT-CTTCTTACTCATTACAGCCAGAGAATGG 539
Query 921 AGTTCCCATTAAGCCATTTGTGGATGACATGGAAGATCAAGAACTGATGAAACTTGCAGA 980
||| || || ||| | |||||||||||| || |||||||||||||| |||| |||| ||
Sbjct 540 AGTGCCTATAAAGGCTTTTGTGGATGACCTGAAAGATCAAGAACTGTTGAATCTTGTGGA 599
Query 981 ATT-CTTCGATGGATGTTAT-CAGTACGAAGATCTAAGGGACGCAG 1024
|| || ||| | ||||| || || |||||| | ||||| ||||
Sbjct 600 GTTTCT-CGAAAGCTGTTACGCA-TATGAAGATATGAGGGATGCAG 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59788849095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5