BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473181
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29780.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1014 0.0
AT1G29770.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 243 2e-63
> AT1G29780.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:10426950-10427615 FORWARD
LENGTH=666
Length=666
Score = 1014 bits (549), Expect = 0.0
Identities = 628/667 (94%), Gaps = 2/667 (0%)
Strand=Plus/Plus
Query 1 ATGTCCATCTTGAAGTTTCATTGCCGCCTTCTGCGTTGTGTTTCCAGGTGCTTTACAGCC 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |
Sbjct 1 ATGTCCATCTTGAAGTTTCATTGTCGCCTTCTGCGTTGTGTTTCCAGGTGCTTCACGGGC 60
Query 61 ACCACCATCAGCTATCCAGCCACAAAACATGATTTTACAAAACTTGACAAACTCAAGGAC 120
| ||||||||||||||||||||||||||||| | ||||||| |||| |||||| |||||
Sbjct 61 ATCACCATCAGCTATCCAGCCACAAAACATGGCTATACAAAATTTGAGAAACTCGAGGAC 120
Query 121 CCTCTGACAGAATATACCACCACAAAAAGAACAATCATCCTCGATCTTGATGAAACATTG 180
|||||||||| |||||||| || ||||| |||||||||||||||||||||||||| |||
Sbjct 121 CCTCTGACAGGATATACCAACATGAAAAGGACAATCATCCTCGATCTTGATGAAACGTTG 180
Query 181 GTTCACTCAACAACCCAACCTCCGGGGGTTAAATATGATTTCATGGTGATGGTGAAAATG 240
|||||| ||||||| || | |||||| |||||| ||||||||||||||||||||||||||
Sbjct 181 GTTCACGCAACAACACATCTTCCGGGAGTTAAACATGATTTCATGGTGATGGTGAAAATG 240
Query 241 GAAAGGGAGATAATGCCAATCTTTGTGGTGAAACGTCCTGGTGTGACTGAATTCTTGGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAAGGGAGATAATGCCAATCTTTGTGGTGAAACGTCCTGGTGTGACTGAATTCTTGGAA 300
Query 301 AGACTTGGTGAAAACTACAATGTGGTAGTTTTCACAGCTGGTCTGGAAGAATATGCTTCA 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGACTTGGTGAAAACTACAAAGTGGTAGTTTTCACAGCTGGTCTGGAAGAATATGCTTCA 360
Query 361 CAGGTTTTGGACAAGCTAGACAAGAACGGTGT-AGTCTCACAGCGGCTATATCGAGATTC 419
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 361 CAGGTTTTGGACAAGCTAGACAAGAACGGTGTGA-TCTCACAGCGGCTATATCGAGACTC 419
Query 420 ATGCACGGAAGTGAGTGGGAAATATGTAAAGGACTTATCTTTGGTAGTAGGGAAAGACCT 479
||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 ATGCACGGAGGTGAACGGGAAATATGTAAAGGACTTATCTTTGGTAGTGGGGAAAGACCT 479
Query 480 CAGAAGTGCTTTGATTGTCGATGACAATCCATCTTCTTACTCATTACAGCCAGAGAATGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAGAAGTGCTTTGATTGTCGATGACAATCCATCTTCTTACTCATTACAGCCAGAGAATGG 539
Query 540 AGTGCCTATAAAGGCTTTTGTCGATGACCTGAAGGATCAAGAACTGCTGAATCTTGTGGA 599
||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 540 AGTGCCTATAAAGGCTTTTGTGGATGACCTGAAAGATCAAGAACTGTTGAATCTTGTGGA 599
Query 600 GTTCCTCGAAAGTTGTTACGCATATGAGGATATGAGGGATGCAGTCAAGGATTTGCTGGC 659
||| |||||||| |||||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 600 GTTTCTCGAAAGCTGTTACGCATATGAAGATATGAGGGATGCAGTCACGGATTTGCTCGC 659
Query 660 AAACTAG 666
|||||||
Sbjct 660 AAACTAG 666
> AT1G29770.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:10424576-10425801 FORWARD
LENGTH=1226
Length=1226
Score = 243 bits (131), Expect = 2e-63
Identities = 400/523 (76%), Gaps = 45/523 (9%)
Strand=Plus/Plus
Query 145 AAAAGAACAATCATCCTCGATCTTGATGAAACATTGGTTCACTCAAC-A---ACCCAACC 200
||||| |||||| | || |||||||| ||||||||||| || ||||| | | || |||
Sbjct 534 AAAAGGACAATCTTTCTTGATCTTGACGAAACATTGGTACATTCAACGATGGAACC-ACC 592
Query 201 --TCCGGGGGTTAAATAT-GATTTCATGGTGATGG-TGAAA-ATGGAAAGGGAG--ATAA 253
||| ||||| ||| | ||||||||||||| || | ||| || | || |||| | |
Sbjct 593 AATCC--GGGTT-AATGTAGATTTCATGGTGA-GGAT-AAAGATCG-AA-GGAGCCGTTA 645
Query 254 TGCCAATCTTTGTGGTGAAACGTCCTGGTGTGACTGA-ATTCTTGGAAA-GACTTGGTGA 311
| ||||| |||||||| ||||| || || || ||||| ||||| |||| || | || |
Sbjct 646 TACCAATGTTTGTGGTAAAACGACCAGGAGTTACTGAGTTTCTT-GAAAGGA-TCAGT-A 702
Query 312 A-AACTA-CAATGTGGTAGTTTTCACAG-CTGGTCTGGAAGAATATGCTTCACAGGTTTT 368
| ||||| | | |||| | | ||||||| | ||| | ||||||||||||||||||||
Sbjct 703 AGAACTATCGA-GTGGCAATCTTCACAGCCGGGT-TACCGGAATATGCTTCACAGGTTTT 760
Query 369 GGACAAGCTAGACAAGAA-CGGTGTAG-TCTCACAGCGGCTATATCGAGATTCATGCACG 426
||| || || |||||||| | |||| | |||||||||||||||||||||||||||||||
Sbjct 761 GGATAAACTTGACAAGAATC-GTGT-GATCTCACAGCGGCTATATCGAGATTCATGCACA 818
Query 427 GAAGTGAGTGGGAA-ATATGT-AAAGGACTTATCTTTGGTAGT-AGGGAAAGACCTCAGA 483
||||||| ||| || ||||| |||| ||||||||||||| | | | || |||||| |
Sbjct 819 GAAGTGAATGG-AAGATATGCCAAAG-ACTTATCTTTGGTGGCGAAG-AATGACCTCGGG 875
Query 484 AGTGCTTTGATTGTCGATGACAATCCAT-CTTCTTACTCATTACAGCCAGAGAATGGAGT 542
|||| |||| | || || || || || | || || |||| || |||||||| ||||||||
Sbjct 876 AGTGTTTTGCTAGTTGACGATAACCCTTTCTCCT-ACTCGTTGCAGCCAGACAATGGAGT 934
Query 543 GCCTATAAAGGCTTTTGTCGATGACCTG-AAGGATCAAGAACTGCTGAATCTTGTGGAGT 601
|| || ||| | ||| | |||||| || ||| |||||||||| |||| |||| || |
Sbjct 935 TCCCATTAAGCCATTTATGGATGACATGGAAG-ATCAAGAACTAATGAAGCTTGCAGAAT 993
Query 602 TCCTCGAAAGTTGTTACGCA-TATGAGGATATGAGGGATGCAG 643
|| |||| | ||||| || || || ||| | ||||||||||
Sbjct 994 TCTTCGATGGATGTTAT-CAGTACGAAGATCTAAGGGATGCAG 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5