BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473182

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29785.1 | Symbols:  | other RNA | chr1:10428509-10429133 RE...   551    2e-156


> AT1G29785.1 | Symbols:  | other RNA | chr1:10428509-10429133 
REVERSE LENGTH=625
Length=625

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 320/331 (97%), Gaps = 0/331 (0%)
 Strand=Plus/Plus

Query  1    CTGTGTCAATGCCGGAATCAAGCTCAAGcttctcgtctctctttctcctactcaccatct  60
            ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct  73   CTGTGTCAATGCCGGAATCTAGCTCAAGCTTCTCGTCTCTCTTTCTTCTACTCATCATCT  132

Query  61   tcttcctccttttactctctccatcgctttcttctGCCGAATCTGAAGTTCATGTTTTGG  120
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  133  TCTTCCTCCTTTTACTCTCTCCATCGCTTTCTTCTCCCGAATCTGAAGTTCATGTTTTGG  192

Query  121  ATCGTGAGCTGTTAGAGATCCAGAAAAATCCGAAGCCGGTCAAGACTAATAGGAAACTCA  180
            ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct  193  ATCGTGAGCTGTTAGAGATCCAGACGAATCCGAAGCCGGGCAAGACTAATAGGAAACTCA  252

Query  181  AGTGCTGCGAGATGCGGAGCAGATCTCAGTGTTCGGCTTTCCCTAGATGCAGGTGGTGTC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  253  AGTGCTGCGAGATGCGGAGCAGATCTCAGTGTTCGGCTTTCCCTAGATGCAGGTGGTGTC  312

Query  241  GTAGTGAAGCTCTCGATGACTTGTGCTTTAGTAAAGCTGAAGCCTTGCGACTTCCAAGTC  300
            ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  313  GTAGTGAAGCTCTTGATGACTTGTGCTTCAGTAAAGCTGAAGCCTTGCGACTTCCAAGTC  372

Query  301  AAGTCTTCGTCTGTGAATTATGAATTAACAG  331
            |||||||| | ||||||||||||||||||||
Sbjct  373  AAGTCTTCCTTTGTGAATTATGAATTAACAG  403



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23358878355


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5