BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473184
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29790.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 2248 0.0
> AT1G29790.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:10429976-10432034
FORWARD LENGTH=1599
Length=1599
Score = 2248 bits (1217), Expect = 0.0
Identities = 1428/1528 (93%), Gaps = 21/1528 (1%)
Strand=Plus/Plus
Query 26 AAAAATGGCGGGATTCACCATGAGCTTGAACTTGCTTCTACTAGTAGCAATGGTAGCTAC 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 AAAAATGGCGGGATTCACCATGAGCTTGAACTTGCTTCTACTAGTAGCAATGGTAGCTAC 105
Query 86 AAACATCCTCTCACTCTACCACCTCTCCTCCACCACAAATTTCTTCCAATCCACCGTCAA 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 AAACATCCTCTCACTCTACCACCTCTCCTCCACCACAAATTTCTTCCAATCCACCGTCAA 165
Query 146 ATCCACACAATCCTCTGTTCCCACAGTTCCCGATCACCTCCTCCGTCAGCTCCACACAAT 205
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 166 ATCCTCACAATCCTCTGTTCCCACAGTTCCCGATCACCTCCTCCGTCAGCTCCACACTAT 225
Query 206 CCGCGCCGCTATTAACCACCTCACAACTCACCAACCAGACAAATCAACTTCAACCTT-AT 264
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 226 CCGCGCCGCTATTAACCACCTCACAACTCACCAACCAGACAAATCAACTTCAACCTCGA- 284
Query 265 CCTCACGCGCCGCCGTATCCTCCTCCTCGTCCTCCACCCCACCGAAAGAGCTTCTCATCT 324
|||||||||||||||| ||||||||||| ||||||||| | || ||||||||| | ||||
Sbjct 285 CCTCACGCGCCGCCGTCTCCTCCTCCTCCTCCTCCACCGCGCCTAAAGAGCTTTTAATCT 344
Query 325 ACTCAAAGCTCTCACCTATAGCTTCAGCTTGTCATAACTACCCTGACCTTCTTCATGAGT 384
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 ACTCTAAGCTCTCACCTATAGCTTCAGCTTGTCATAACTACCCTGACCTTCTTCATGAGT 404
Query 385 ATATGAACTACACTCCTTTCTCTCTTTGTCCTTCCGATACCGATCTCGTCGAGAAACTTA 444
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 405 ATATGAACTACACTCCTTTCTCTCTTTGTCCTTCTGACACCGATCTCGTCGAGAAACTCA 464
Query 445 TCCTCCGTGGCTGCCACCCACTTCCTCGCCGTCGTTGCTTCTCACGAACGCCGCGAAATC 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TCCTCCGTGGCTGCCACCCACTTCCTCGCCGTCGTTGCTTCTCACGAACGCCGCGAAATC 524
Query 505 CTTCAGATTCGAAACTTGAATCGAATGTTATCTGGTCTTACTACTCTTGCAAAAGCTTTG 564
||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||||
Sbjct 525 CTTCAGATTCGAAACCTGAATCTAATGTTCTCTGGTCTTACTACTCTTGCAAGAGCTTTG 584
Query 565 ATTGTTTGATTACTAAATTCCCCGATCTAGGGTTTGATCTCTCCTTAGAGAATTCCAAAT 624
|||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 585 ATTGTTTGATTACTAAGTTCTCTGATCTAGGGTTTGATCTCTCCTTAGAGAAATCCAAAT 644
Query 625 CTCAGTTCTCTGCTTACAAATCCGAGCTTGAT-TTACCGATCTCGCAGCTTCTCCAGATC 683
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 645 CTCAGTTCTCTGCTTACAAATCCGAGCTTGATCTT-CCGATCTCGCAGCTTCTCCAGATC 703
Query 684 GCTAAATCAGCTAATTCTGTTCTCCGTCTTGGGATCGATGTCGGTGGTGGTACTGGATCT 743
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 704 GCTAAATCTGCTAATTCTGTTCTCCGTCTTGGTATCGATGTCGGTGGTGGTACTGGATCT 763
Query 744 TTCGCTGCTGCGATGAAGGCTCGTAATGTTACGGTTTTGACCACGACGATGAATTTCAAT 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 764 TTCGCTGCTGCGATGAAGGCTCGTAATGTTACGGTTTTGACCACGACGATGAATTTTAAT 823
Query 804 GCGCCGTATAGTGAAGCGGTGGCGATGAGAGGGCTTGTGCCGCTTCATGTGCCGCTT-CA 862
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 824 GCGCCGTATAGTGAAGCGGTGGCGATGAGAGGACTTGTGCCGCTTCATGTGCCG-TTACA 882
Query 863 GCAGCGGCTTCCGGTGTTTGATGGTGTGGTGGATTTGGTTCGGTGTGGAAGAGCTGTGAA 922
||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||
Sbjct 883 GCAACGGCTTCCGGTGTTTGATGGTGTTGTGGATTTGGTTAGGTGTGGAAGAGCGGTGAA 942
Query 923 TCGGTGGATTCCGGTGACTGTTATGGAGTTTTTCTTCTTCGATTTGGATCGAATTCTTCG 982
|||||||||||||||||| |||||||| ||||||||||| ||||||||| | ||||||||
Sbjct 943 TCGGTGGATTCCGGTGACGGTTATGGAATTTTTCTTCTTTGATTTGGATAGGATTCTTCG 1002
Query 983 TGGCGGTGGTTATCTTTGGTTGGATCGGTTCTTTAGTAAAAAAGTTGATCTTGACAATGT 1042
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1003 TGGTGGTGGTTATCTTTGGTTGGATCGGTTCTTTAGTAAAAAAGTTGATCTTGAAAATGT 1062
Query 1043 TTATGCGCCTATGATCGGAAAATTGGGTTATAAGAAGGTGAAATGGGCGGTGGCTAACAA 1102
|||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1063 TTATGCACCGATGATCGGGAAATTGGGGTATAAGAAGGTGAAATGGGCGGTGGCTAACAA 1122
Query 1103 AA-TAGATTCGAAACATGGTGAAGTTTTCTTGACGGCTCTGCTTCAAAAACCTGTTGCAA 1161
| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1123 AGCT-GATTCGAAACATGGTGAAGTTTTCTTGACGGCTTTGCTTCAAAAACCTGTTGCAA 1181
Query 1162 GATAATGAA-TCTTTTTTGAGGGCTATTTCCTCGAGTTTGT-AGCAAACAGCTTACTGTT 1219
||| || || ||||| | ||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 1182 GATGATAAAATCTTTCT-GAGGGCTATTTCCTCGACTTTGTTAGCAAACAGCTTACTTTT 1240
Query 1220 GTTGAAGATTTGGAAGGCAAGATTCTTCGACGGTTTCAGACATAGCTTTTT-CCAGCTGT 1278
||||||||||||||| |||||||| ||| ||| ||||||| || ||||||| |||| |||
Sbjct 1241 GTTGAAGATTTGGAAAGCAAGATTTTTCAACGATTTCAGATATTGCTTTTTTCCAGATGT 1300
Query 1279 AAGCACACAAGCAATCATGTTATTTCTGCGAAACAAGATTTAGGGGAATTGTAAGCCAAG 1338
||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 1301 AAGCACACAAGCAATGATGTTATTTATGCGAAAGAAGAACTAGGGGAATTGTAAGCCAAG 1360
Query 1339 ATTTGATCTGTTGTTGTTAGAGAGAG-TCTGATTAAAATGGTGGTACACATAAATTATAG 1397
|||||||| |||||| ||||| ||| | || ||||| ||||||| ||||||||||| |
Sbjct 1361 GTTTGATCTATTGTTGGTAGAGGGAGAT-TGGTTAAAC-GGTGGTATACATAAATTATGG 1418
Query 1398 ACTCTTCGACTT-GTTTCTGTCATAGCTAATATGCATTTATATTATTCATAAGATGG-AA 1455
| ||||| |||| | ||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 1419 AGTCTTCTACTTTGATTCTGTCATAGATAATATGCATTTATATTATTCCTAAGATGGTAA 1478
Query 1456 TTTTTTGTGGAAGGCAGATTGTAGAATGGTTAAGAAGTTTCA-GAATTTAAGTTGAAGCT 1514
|||| ||||||||| |||||||||||||||||||||||||| || | ||||| |||||
Sbjct 1479 GTTTT-GTGGAAGGCTGATTGTAGAATGGTTAAGAAGTTTCATGA-TA-AAGTTCAAGCT 1535
Query 1515 TCTGAAAGTTATTTGTCTTATGACGTTT 1542
||||||||||||| || |||||||||||
Sbjct 1536 TCTGAAAGTTATTCGTTTTATGACGTTT 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104026220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5