BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473186 Length=1798 Score E Sequences producing significant alignments: (Bits) Value AT1G29800.1 | Symbols: | RING/FYVE/PHD-type zinc finger family... 2798 0.0 > AT1G29800.1 | Symbols: | RING/FYVE/PHD-type zinc finger family protein | chr1:10432601-10435441 FORWARD LENGTH=1932 Length=1932 Score = 2798 bits (1515), Expect = 0.0 Identities = 1681/1761 (95%), Gaps = 11/1761 (1%) Strand=Plus/Plus Query 1 AAGGTTAGCGACGGTGTTAACTTGTAAA---GTTGTAATCGTTTTCCTGACGACATAGTC 57 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 1 AAGGTTAGCGACGGTGTTAACTTGTAAAGTTGTTGTAATCGTTTTCCAGACGACATAGTC 60 Query 58 GTGTGTTTCTGTGTTTCTGAAATTTTGTAAGAATCG-AAGATTGGCTTCGCTATCGAGAG 116 ||||||| | |||||||||| ||||||| ||||| |||||||||||||| ||||||| Sbjct 61 --GTGTTTCGGAGTTTCTGAAA-TTTGTAAAAATCGAAAGATTGGCTTCGCAATCGAGAC 117 Query 117 AAGGAAGAACTCTAGAAAATGGATGAAAGAGATCCAGAAATTCGTCG-TTCTCATGGTGA 175 |||||| |||||||||| |||||||||||||||| |||||||||| | |||||||||||| Sbjct 118 AAGGAACAACTCTAGAACATGGATGAAAGAGATCGAGAAATTCGT-GCTTCTCATGGTGA 176 Query 176 TTCTGATGCTGGTAATGTCGTTGGTCAAAGCATAAAGGATACTAGAGAAGAAAATTCTGG 235 |||| ||||||||||||||||| ||||||||||| || |||||||||||||| ||||||| Sbjct 177 TTCTAATGCTGGTAATGTCGTTAGTCAAAGCATAGAGAATACTAGAGAAGAAGATTCTGG 236 Query 236 CTT-ATGTGAAGACTTTGTTGAAGAGAGCAAAAGACTGGAACCGGAACAACAAAAGCGTG 294 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 237 -TTCATGTGAAGGCTTTGTTGAAGAGAGCAAAAGACTGGAACCGGAACAACAAAAGCATG 295 Query 295 GTAAATATTTTTTCTATGACACGCCGCTTTCTGAGGAAACCGGGGTTTGGATTCCTGTTT 354 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 296 GTAAATATTTTTTCTATGACACACCGCTTTCTGAGGAAACCGGGGTTTGGATACCTGTTT 355 Query 355 CAGTCCCACCCATGTTAGAACCTGATCACGAGGAGTGGTCAAGAGGTCTTAGTTTCAATG 414 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 356 CAGTCCCACCCATGTTAGAACCTGATCATGAGGAATGGTCAAGAGGTCTTAGTTTCAATG 415 Query 415 GTGGTTACTTCCCTGAGGGAGATATGGGATGGAACCAGATATTTGATGAAGACAAGGAGT 474 |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 416 GTGGTTACTTCCCTGAAGGAGATATGGGATGGGACCAGATATTTGATGAAGATAAGGAGT 475 Query 475 TAACCATGTGGGATGTGATAGTGGATATGTTACTTGCAGCGCGTGGTAAAGCGAGTGCTC 534 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 476 TAACTATGTGGGATGTGATAGTTGATATGTTACTTGCAGCGCGTGGTAAAGCGAGTGCTC 535 Query 535 TTAGTTCGGGAAATCTTGAGAGATGTGGCATTAATTTTTTGTCAGGACATCTTCTTGAAC 594 ||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 536 TTAGTTCTGGCAACCTTGAGAGATGTGGCATTAATTTTTTGTCGGGACATCTTCTTGAAC 595 Query 595 AAGCTTGGCAAGAGATGGCTCATACTCTCACTGAGGCTAACTTTGGTAATGCAAGAGAAA 654 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 596 AAGCTTGGCAAGATATGGCTCATACTCTTACTGAGGCTAACTTTGGTAATGCAAGAGAGA 655 Query 655 TTCTGGAGACTGAGCCACCCAAGTGGCTGCCGGATAGTGCTGCTTCTGCTTGTATGCTAT 714 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 656 TTCTGGAGACTGAGCCACCCAAGTGGCTACCGGATAGCGCTGCTTCTGCTTGTATGCTAT 715 Query 715 GTAGTGTGAGGTTTCATCCAATTATGTGTTCCCGTCATCATTGTCGATATTGTGGAGGAA 774 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 716 GTAGTGTGAGGTTTCATCCAATTATGTGTTCCCGTCATCACTGTCGATATTGTGGAGGAA 775 Query 775 TATTCTGTAGGGACTGTTCTAAAGGAAGAAGCTTGGTTCCTGCAAAGTTTCGTGTTTCAG 834 ||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 776 TATTCTGTAGGGATTGTTCTAAAGGAAAAAGCTTGGTTCCTGTAAAGTTTCGTGTTTCAG 835 Query 835 ATCCCCAAAGAGTTTGTGATGTGTGTTTTGTGAGGTTGGAGTCTGTGCAGCCTTATTTGA 894 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 ATCCCCAGAGGGTTTGTGATGTGTGTTTTGTGAGGTTGGAGTCTGTGCAGCCTTATTTGA 895 Query 895 TGGACCAAGTGAGTCCTGCTGCTCAGTTGCCAACCCATGACTTGACAGATCTTAGTACAT 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 896 TGGACCAAGTGAGTCCTGCTGCTCAGTTGCCAACCCATGACTTGACAGATCTTAGTACGT 955 Query 955 TGAGGTCTTGGGTGAATTTTCCATGGGGACAATCCATGGAGTATGAGATTTATAAGGCAA 1014 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 956 TGAGGTCTTGGGTGAATTTTCCATGGGGACAATCCATGGAGTATGAGATCTATAAGGCGA 1015 Query 1015 CAAACACTATTCGGGGTTATATAACCAAGGTTGGTTCTTCGAGAACTGAGAGGTCCATCC 1074 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 CAAACACTCTTCGGGGTTATATAACCAAGGTTGGTTCTTCGAGAACTGAGAGGTCCATCC 1075 Query 1075 CAGATGCTATTTTAAGACAAGCAAAAGGGCTTGCAGTAATCACTGTTACCAGAGTTGGAG 1134 ||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 1076 CAGATGCCATTTTAAGACAAGCAAAAGGTCTTGCAGTAATCACTGTTGCCAGAGTTGGAG 1135 Query 1135 TTATGGTTACATATAAAATCGGGACTGGACTCGTGGTTGCTCGTAGAGATGATGGCTCCT 1194 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1136 TTATGGTTACATATAAAATCGGGACTGGACTTGTGGTTGCTCGTAGAGATGATGGCTCCT 1195 Query 1195 GGTCTCCACCCTCCGCCATCTCTTCATTTGGTTTGGGATGGGGTGCTCAGGCAGGAGGAG 1254 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 GGTCTCCACCCTCTGCCATCTCTTCATTTGGTTTGGGATGGGGTGCTCAGGCAGGAGGAG 1255 Query 1255 AGTTCATAGACTTTATTATCGTTCTGAGAACTCGTGAAGCCATCCAAACATTTGGGAGTA 1314 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1256 AGTTCATAGACTTTATTATCGTTCTGAGAACTCGTGAAGCCATCCAAACGTTTGGGAGTA 1315 Query 1315 ACACCCATCTTGTTGTTGGAGCTGGTTTAAGCGCTGCAGTTGGTGTGACTGGACGAGCAG 1374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 ACACCCATCTTGTTGTTGGAGCTGGTTTAAGCGCTGCAGTTGGTGTGACTGGACGAGCAG 1375 Query 1375 TTGAAGCAGATATCTGAGCAGGTAGCGGTGGATATGCTGCTTGTTATACCTACAGCTGCA 1434 ||||||| |||||| |||||||||| ||||||||||||||||| || ||||||||||||| Sbjct 1376 TTGAAGCGGATATCCGAGCAGGTAGTGGTGGATATGCTGCTTGCTACACCTACAGCTGCA 1435 Query 1435 GCAAAGGTGCATTTGTCGGATGCTCGCTTGAAGGAAGCATCTTCACGACACGCACAAGTG 1494 |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 1436 GCAAAGGTGCATTTGTCGGATGCTCGCTTGAAGGAAGCATTTTCACAACACGTACAAGTG 1495 Query 1495 AGAACTCACGGTTCTATGGGAGCCAGTCCCTAGCTGCGTCTGACATCCTCCTTGGCTCTT 1554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1496 AGAACTCACGGTTCTATGGGAGCCAGTCCCTAGCTGCGTCTGACATCCTCCTTGGCTCTT 1555 Query 1555 TGCCAAGACCACCTGCTGCTGCTGCCCTCTACCGTGCACTTGGCGATCTGTATCAGAAGA 1614 ||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1556 TGCCAAGGCCACCTGCCGCTGCTGCACTCTACCGTGCGCTTGGCGATCTGTATCAGAAGA 1615 Query 1615 TGGGGAGTGAAACTGTGGGGTCTCCAGCAATTTCTCCATTGTCTGAAGACTAAACTTGTT 1674 |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1616 TGGGGAGTGAAACTGTTCGGTCTCCGGCAATTTCTCCATTGTCTGAAGACTAAACTTGTT 1675 Query 1675 TAATTCGCTTCATCTCTTTGGAAGAATGATTGACAACAATCTTGTATAGATTCATGCAAT 1734 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1676 CGATTCGCTTCATCTCGTTGGAAGAATGATTGACAACTATCTTGTATAGATTCATGCAAT 1735 Query 1735 TCTTGAATGTACATAGTTTGT 1755 ||||||||||||||||||||| Sbjct 1736 TCTTGAATGTACATAGTTTGT 1756 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88955365740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5