BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473186
Length=1798
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29800.1 | Symbols: | RING/FYVE/PHD-type zinc finger family... 2798 0.0
> AT1G29800.1 | Symbols: | RING/FYVE/PHD-type zinc finger family
protein | chr1:10432601-10435441 FORWARD LENGTH=1932
Length=1932
Score = 2798 bits (1515), Expect = 0.0
Identities = 1681/1761 (95%), Gaps = 11/1761 (1%)
Strand=Plus/Plus
Query 1 AAGGTTAGCGACGGTGTTAACTTGTAAA---GTTGTAATCGTTTTCCTGACGACATAGTC 57
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1 AAGGTTAGCGACGGTGTTAACTTGTAAAGTTGTTGTAATCGTTTTCCAGACGACATAGTC 60
Query 58 GTGTGTTTCTGTGTTTCTGAAATTTTGTAAGAATCG-AAGATTGGCTTCGCTATCGAGAG 116
||||||| | |||||||||| ||||||| ||||| |||||||||||||| |||||||
Sbjct 61 --GTGTTTCGGAGTTTCTGAAA-TTTGTAAAAATCGAAAGATTGGCTTCGCAATCGAGAC 117
Query 117 AAGGAAGAACTCTAGAAAATGGATGAAAGAGATCCAGAAATTCGTCG-TTCTCATGGTGA 175
|||||| |||||||||| |||||||||||||||| |||||||||| | ||||||||||||
Sbjct 118 AAGGAACAACTCTAGAACATGGATGAAAGAGATCGAGAAATTCGT-GCTTCTCATGGTGA 176
Query 176 TTCTGATGCTGGTAATGTCGTTGGTCAAAGCATAAAGGATACTAGAGAAGAAAATTCTGG 235
|||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct 177 TTCTAATGCTGGTAATGTCGTTAGTCAAAGCATAGAGAATACTAGAGAAGAAGATTCTGG 236
Query 236 CTT-ATGTGAAGACTTTGTTGAAGAGAGCAAAAGACTGGAACCGGAACAACAAAAGCGTG 294
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 237 -TTCATGTGAAGGCTTTGTTGAAGAGAGCAAAAGACTGGAACCGGAACAACAAAAGCATG 295
Query 295 GTAAATATTTTTTCTATGACACGCCGCTTTCTGAGGAAACCGGGGTTTGGATTCCTGTTT 354
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 296 GTAAATATTTTTTCTATGACACACCGCTTTCTGAGGAAACCGGGGTTTGGATACCTGTTT 355
Query 355 CAGTCCCACCCATGTTAGAACCTGATCACGAGGAGTGGTCAAGAGGTCTTAGTTTCAATG 414
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 356 CAGTCCCACCCATGTTAGAACCTGATCATGAGGAATGGTCAAGAGGTCTTAGTTTCAATG 415
Query 415 GTGGTTACTTCCCTGAGGGAGATATGGGATGGAACCAGATATTTGATGAAGACAAGGAGT 474
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 416 GTGGTTACTTCCCTGAAGGAGATATGGGATGGGACCAGATATTTGATGAAGATAAGGAGT 475
Query 475 TAACCATGTGGGATGTGATAGTGGATATGTTACTTGCAGCGCGTGGTAAAGCGAGTGCTC 534
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 476 TAACTATGTGGGATGTGATAGTTGATATGTTACTTGCAGCGCGTGGTAAAGCGAGTGCTC 535
Query 535 TTAGTTCGGGAAATCTTGAGAGATGTGGCATTAATTTTTTGTCAGGACATCTTCTTGAAC 594
||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 536 TTAGTTCTGGCAACCTTGAGAGATGTGGCATTAATTTTTTGTCGGGACATCTTCTTGAAC 595
Query 595 AAGCTTGGCAAGAGATGGCTCATACTCTCACTGAGGCTAACTTTGGTAATGCAAGAGAAA 654
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 596 AAGCTTGGCAAGATATGGCTCATACTCTTACTGAGGCTAACTTTGGTAATGCAAGAGAGA 655
Query 655 TTCTGGAGACTGAGCCACCCAAGTGGCTGCCGGATAGTGCTGCTTCTGCTTGTATGCTAT 714
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 656 TTCTGGAGACTGAGCCACCCAAGTGGCTACCGGATAGCGCTGCTTCTGCTTGTATGCTAT 715
Query 715 GTAGTGTGAGGTTTCATCCAATTATGTGTTCCCGTCATCATTGTCGATATTGTGGAGGAA 774
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 716 GTAGTGTGAGGTTTCATCCAATTATGTGTTCCCGTCATCACTGTCGATATTGTGGAGGAA 775
Query 775 TATTCTGTAGGGACTGTTCTAAAGGAAGAAGCTTGGTTCCTGCAAAGTTTCGTGTTTCAG 834
||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 776 TATTCTGTAGGGATTGTTCTAAAGGAAAAAGCTTGGTTCCTGTAAAGTTTCGTGTTTCAG 835
Query 835 ATCCCCAAAGAGTTTGTGATGTGTGTTTTGTGAGGTTGGAGTCTGTGCAGCCTTATTTGA 894
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATCCCCAGAGGGTTTGTGATGTGTGTTTTGTGAGGTTGGAGTCTGTGCAGCCTTATTTGA 895
Query 895 TGGACCAAGTGAGTCCTGCTGCTCAGTTGCCAACCCATGACTTGACAGATCTTAGTACAT 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 896 TGGACCAAGTGAGTCCTGCTGCTCAGTTGCCAACCCATGACTTGACAGATCTTAGTACGT 955
Query 955 TGAGGTCTTGGGTGAATTTTCCATGGGGACAATCCATGGAGTATGAGATTTATAAGGCAA 1014
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 956 TGAGGTCTTGGGTGAATTTTCCATGGGGACAATCCATGGAGTATGAGATCTATAAGGCGA 1015
Query 1015 CAAACACTATTCGGGGTTATATAACCAAGGTTGGTTCTTCGAGAACTGAGAGGTCCATCC 1074
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CAAACACTCTTCGGGGTTATATAACCAAGGTTGGTTCTTCGAGAACTGAGAGGTCCATCC 1075
Query 1075 CAGATGCTATTTTAAGACAAGCAAAAGGGCTTGCAGTAATCACTGTTACCAGAGTTGGAG 1134
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1076 CAGATGCCATTTTAAGACAAGCAAAAGGTCTTGCAGTAATCACTGTTGCCAGAGTTGGAG 1135
Query 1135 TTATGGTTACATATAAAATCGGGACTGGACTCGTGGTTGCTCGTAGAGATGATGGCTCCT 1194
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1136 TTATGGTTACATATAAAATCGGGACTGGACTTGTGGTTGCTCGTAGAGATGATGGCTCCT 1195
Query 1195 GGTCTCCACCCTCCGCCATCTCTTCATTTGGTTTGGGATGGGGTGCTCAGGCAGGAGGAG 1254
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GGTCTCCACCCTCTGCCATCTCTTCATTTGGTTTGGGATGGGGTGCTCAGGCAGGAGGAG 1255
Query 1255 AGTTCATAGACTTTATTATCGTTCTGAGAACTCGTGAAGCCATCCAAACATTTGGGAGTA 1314
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1256 AGTTCATAGACTTTATTATCGTTCTGAGAACTCGTGAAGCCATCCAAACGTTTGGGAGTA 1315
Query 1315 ACACCCATCTTGTTGTTGGAGCTGGTTTAAGCGCTGCAGTTGGTGTGACTGGACGAGCAG 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 ACACCCATCTTGTTGTTGGAGCTGGTTTAAGCGCTGCAGTTGGTGTGACTGGACGAGCAG 1375
Query 1375 TTGAAGCAGATATCTGAGCAGGTAGCGGTGGATATGCTGCTTGTTATACCTACAGCTGCA 1434
||||||| |||||| |||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1376 TTGAAGCGGATATCCGAGCAGGTAGTGGTGGATATGCTGCTTGCTACACCTACAGCTGCA 1435
Query 1435 GCAAAGGTGCATTTGTCGGATGCTCGCTTGAAGGAAGCATCTTCACGACACGCACAAGTG 1494
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1436 GCAAAGGTGCATTTGTCGGATGCTCGCTTGAAGGAAGCATTTTCACAACACGTACAAGTG 1495
Query 1495 AGAACTCACGGTTCTATGGGAGCCAGTCCCTAGCTGCGTCTGACATCCTCCTTGGCTCTT 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AGAACTCACGGTTCTATGGGAGCCAGTCCCTAGCTGCGTCTGACATCCTCCTTGGCTCTT 1555
Query 1555 TGCCAAGACCACCTGCTGCTGCTGCCCTCTACCGTGCACTTGGCGATCTGTATCAGAAGA 1614
||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1556 TGCCAAGGCCACCTGCCGCTGCTGCACTCTACCGTGCGCTTGGCGATCTGTATCAGAAGA 1615
Query 1615 TGGGGAGTGAAACTGTGGGGTCTCCAGCAATTTCTCCATTGTCTGAAGACTAAACTTGTT 1674
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1616 TGGGGAGTGAAACTGTTCGGTCTCCGGCAATTTCTCCATTGTCTGAAGACTAAACTTGTT 1675
Query 1675 TAATTCGCTTCATCTCTTTGGAAGAATGATTGACAACAATCTTGTATAGATTCATGCAAT 1734
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1676 CGATTCGCTTCATCTCGTTGGAAGAATGATTGACAACTATCTTGTATAGATTCATGCAAT 1735
Query 1735 TCTTGAATGTACATAGTTTGT 1755
|||||||||||||||||||||
Sbjct 1736 TCTTGAATGTACATAGTTTGT 1756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88955365740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5