BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473195
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29850.3 | Symbols: | double-stranded DNA-binding family pr... 1062 0.0
> AT1G29850.3 | Symbols: | double-stranded DNA-binding family
protein | chr1:10447754-10449946 FORWARD LENGTH=823
Length=823
Score = 1062 bits (575), Expect = 0.0
Identities = 667/709 (94%), Gaps = 16/709 (2%)
Strand=Plus/Plus
Query 3 TTTTGAAGCATTTCTCCTTTT-----AGAGCTCTGTGTTCTGTTTTTGAGGTAAGCGAAG 57
|||||||||||||| |||||| |||| ||||||| ||||||||||||| ||||
Sbjct 5 TTTTGAAGCATTTCCCCTTTTAGAGAAGAGAGCTGTGTT-GGTTTTTGAGGTAAAAGAAG 63
Query 58 AGCCCCAATTTCGATTTGGAGGAAAGAGACGAAGAAGAAGAAATCTCCGATGGCTGATCC 117
|| |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||
Sbjct 64 AGACCCAATTTCGATTTGGAGGATAGAGACGAAGAAGAAGACAGCTCCGATGGCTGATCC 123
Query 118 TGAACTAGAAGCTATTAGACAGAGGAGAATGCAAGAGCTGATGGCTCGACAAGGCATGGG 177
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 124 TGAACTAGAAGCTATTAGACAGAGGAGAATGCAAGAGCTCATGGCTCGACAAGGCATGGG 183
Query 178 TAAGCAGGGCAATCAGCAGAATCCAGAGCAAGAGAAACAGCAGGAAGATGCTAGAAGGGA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 184 TAAGCAGGGCAATCAGCAGAATCCAGAGCAAGAGAAACAGCAGGAAGATGCTAAAAGGGA 243
Query 238 AGCTGATGAACGTAGGCAAATGATGCTTAGTCAAGTATTGTCTTCTCAAGCCCGAGAGAG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AGCTGATGAACGTAGGCAAATGATGCTTAGTCAAGTATTGTCTTCTCAAGCCCGAGAGAG 303
Query 298 AATTGCTCGAATTGCCCTGGTGAAACCTGAGAAAGCTAGAGGTGTGGAGGATGTTATTTT 357
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AATTGCTCGAATTGCTCTGGTGAAACCTGAGAAAGCTAGAGGTGTGGAGGATGTTATTTT 363
Query 358 GAGGGCTGCTCAGATGGGGCAGATAGTTGAGAAGGTTTCTGAGGAACGGCTTATAACACT 417
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GAGGGCTGCTCAGATGGGACAGATAGTTGAGAAGGTTTCTGAGGAACGGCTTATAACACT 423
Query 418 GTTGGAACAAATAAACAGCCAAACTACCAAACAAACGAAAGTCACG-TA----CCAACGG 472
|||||||||||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 424 GTTGGAACAAATAAACAGCCAAACTACCAAGCAAACGAAAGTCACGGTAAGTACCAACGG 483
Query 473 CGCCGTGGGGTGGACGACGATTAGGAAGGAAGAAGAATATTATGCTGTGCTTTATACATC 532
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 484 CGCCGTGGGGTGGACGACGATTAGGAAGGAAGAAGAATATTATGATGTGCTTTGTATATC 543
Query 533 TATGGAGATCTCACTGTTGA-GTTAGTGAGTTCACTTAAGATCTACTTAAATGTTTCTGT 591
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 544 TATGGAGATCTCACTGTT-ATGTTAGTGAGTTCACTTAAGATCTACTTAAATGTTTCTGT 602
Query 592 TAAATATGTTTATTGTGAGTGAATCTTAATTATCTTTCAAA-ATGCTTCGGATGAGATTA 650
| ||||||||||||||||||||||||| |||||||| |||| | ||| |||||||||||
Sbjct 603 TCAATATGTTTATTGTGAGTGAATCTTGATTATCTTCCAAACA--CTTGGGATGAGATTA 660
Query 651 AAGTAATCTGAAACTGAAATTCTGCATTTTTATTTTTGGCATTTCCTCT 699
||| |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 661 AAGCAATCTGAAACTGAAGCTCTACATTTTTATTTTTGGCATTTCCTCT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5