BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473197
Length=2235
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29880.1 | Symbols: | glycyl-tRNA synthetase / glycine--tRN... 3605 0.0
AT1G29870.1 | Symbols: | tRNA synthetase class II (G, H, P and... 1031 0.0
AT3G44740.1 | Symbols: | Class II aaRS and biotin synthetases ... 769 0.0
> AT1G29880.1 | Symbols: | glycyl-tRNA synthetase / glycine--tRNA
ligase | chr1:10459478-10462801 REVERSE LENGTH=2394
Length=2394
Score = 3605 bits (1952), Expect = 0.0
Identities = 2143/2235 (96%), Gaps = 13/2235 (1%)
Strand=Plus/Plus
Query 1 GGAAACAAACACTTGGTCGAATGCGCATCTTCTCTAC-CTCGGTCTTTCCTCGCAGACAA 59
|||||||||||||| |||||||||||||||||||||| || ||||||| ||||||
Sbjct 1 GGAAACAAACACTTCGTCGAATGCGCATCTTCTCTACATTC-GTCTTTCATCGCAG---- 55
Query 60 CAACAACAAATCTTCAATCTTCGTCAATTCCAAACCACCACAATCCGTCGCAACCCAATC 119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 56 --ACAACAAATCTTCAATCTTCGTCAATTCCAAACCACCACAATCCTTCGCAACCCAATC 113
Query 120 TCCATCGCTCCGATCCAGATTCCAATGGACG---CCGAACAATCTCTCCGTCAATCTCTT 176
||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||
Sbjct 114 TCCATCGCTCCGATCCAGATTCCGATGGACGCCACCGAGCAGTCTCTCCGTCAATCTCTT 173
Query 177 TCCGAGAAATCCTCCTCCGTCGAAGCTCAGGGTAACGCCGTCCGAGCTCTCAAGGCTTCC 236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCCGAGAAATCCTCATCCGTCGAAGCTCAGGGTAACGCCGTCCGAGCTCTCAAGGCTTCC 233
Query 237 CGTGCAGCGAAGCCGGAGATCGATGCCGCTATTGAGCAACTCAACAAATTGAAGCTCGAG 296
|||||||| || || || |||||||| || ||||||||||||||||||||||||||||||
Sbjct 234 CGTGCAGCTAAACCAGAAATCGATGCTGCCATTGAGCAACTCAACAAATTGAAGCTCGAG 293
Query 297 AAATCCGCTGTCGAGAAGGAGCTTCAATCTATTATCAGTAGCTCCGGTAATGGTTCGCTT 356
||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 294 AAATCTACCGTCGAGAAGGAGCTTCAGTCTATTATCAGTAGCTCCGGTAATGGTTCGCTT 353
Query 357 AACCGTGAGGCTTTTCGAAAAGCTGTTGTCAACACTCTGGAGCGGCGTTTGTTCTATATC 416
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 354 AACCGTGAGGCTTTTCGAAAAGCTGTTGTCAATACTCTCGAGCGGCGTTTGTTCTATATC 413
Query 417 CCTTCGTTTAAGATCTACAGTGGCGTCGCTGGACTTTTTGATTATGGTCCTCCTGGCTGT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CCTTCGTTTAAGATCTACAGTGGCGTCGCTGGACTTTTTGATTATGGTCCTCCTGGCTGT 473
Query 477 GCTATTAAATCCAATGTCCTGAGCTTTTGGCGTCAACATTTCATTCTTGAGGAGAACATG 536
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 474 GCTATTAAATCCAATGTTCTCAGCTTTTGGCGTCAACATTTCATTCTTGAGGAGAACATG 533
Query 537 CTAGAAGTTGATTGTCCATGTGTGACACCAGAGGTTGTTCTCAAGGCATCTGGGCATGTT 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CTAGAAGTTGATTGTCCATGTGTGACACCAGAGGTTGTTCTCAAGGCATCTGGGCATGTA 593
Query 597 GATAAGTTCACTGATCTTATGGTGAAGGATGAGAAAACTGGAACATGTTACCGTGCGGAC 656
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 594 GATAAGTTCACTGATCTTATGGTTAAGGATGAGAAAACTGGAACATGTTACCGTGCTGAC 653
Query 657 CACTTGCTCAAGGATTATTGCACCGACAAGCTGGAGAAAGATCTTACCATCTCTGCTGAG 716
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 654 CACTTGCTCAAGGATTATTGTACCGAGAAGCTGGAGAAAGATCTTACCATCTCTGCTGAG 713
Query 717 AATGCTGCAGAATTGAAGGATGTTCTTGCTGTTATGGAAAATTTTTCTCCTGAACAGCTA 776
|| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 714 AAAGCTGCTGAATTGAAGGATGTTCTTGCTGTTATGGAAGATTTTTCTCCTGAACAGCTA 773
Query 777 GGTGCCAAGATAAAGGAGTACGGGATCACTGCTCCAGACACGAAGAATCCACTTTCTGAT 836
||||||||||| | |||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 774 GGTGCCAAGATCAGGGAGTATGGGATCACTGCTCCAGACACGAAGAATCCACTCTCTGAT 833
Query 837 CCTTACCCCTTTAACTTGATGTTTCAAACATCCATTGGCCCATCTGGTTTGATTCCTGGT 896
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CCTTACCCGTTTAATTTGATGTTTCAAACATCCATTGGCCCATCTGGTTTGATTCCTGGT 893
Query 897 TACATGCGTCCTGAAACTGCTCAAGGCATTTTTGTGAACTTTAAGGACTTGTACTATTAC 956
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 894 TACATGCGTCCTGAAACTGCTCAAGGTATTTTTGTCAACTTTAAGGACTTGTACTATTAC 953
Query 957 AATGGGAAGAAACTTCCTTTTGCCGCGGCTCAAATTGGTCAAGCCTTTAGAAATGAGATA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AATGGGAAGAAACTTCCTTTTGCCGCGGCTCAAATTGGTCAAGCCTTTAGAAATGAGATA 1013
Query 1017 TCTCCTCGACAAGGGCTTCTTAGAGTTCGTGAATTCACACTGGCAGAAATTGAGCACTTC 1076
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1014 TCTCCTCGACAAGGGCTTCTTAGAGTTCGTGAATTCACGCTGGCAGAGATTGAGCACTTC 1073
Query 1077 GTTGATCCTGAGAATAAGTCACATCCTAAGTTCTCTGATGTAGCAAAATTGGAATTCCTT 1136
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1074 GTTGATCCTGAGAATAAGTCACATCCTAAGTTCTCTGACGTAGCAAAATTGGAATTCCTT 1133
Query 1137 ATGTTCCCAAGGGAAGAACAAATGTCTGGCCAATCTG-CAAAAAAGCTTTGCCTCGGTGA 1195
||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||
Sbjct 1134 ATGTTCCCAAGGGAAGAACAAATGTCTGGCCAATCTGCCAAAAAA-CTTTGCCTTGGTGA 1192
Query 1196 AGCTGTTTCCAAGGGTACTGTGAACAATGAAACTCTTGGATACTTCATTGGGAGAGTGTA 1255
||||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1193 AGCTGTTGCTAAAGGTACTGTGAACAATGAAACTCTAGGATACTTCATTGGGAGAGTGTA 1252
Query 1256 TCTTTTCCTTACTCGTCTTGGCATAGACAAGGAACGGCTGCGCTTCCGTCAGCATCTAGC 1315
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1253 TCTTTTCCTTACTCGTCTTGGCATTGACAAGGAACGGCTGCGCTTCCGTCAGCATCTAGC 1312
Query 1316 AAATGAAATGGCCCACTATGCAGCAGATTGTTGGGATGCTGAAATTGAGAGTTCATATGG 1375
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1313 AAATGAAATGGCCCACTATGCAGCAGATTGTTGGGATGCTGAAATTGAAAGTTCATATGG 1372
Query 1376 GTGGATTGAATGTGTTGGGATTGCAGATAGGTCTGCATACGACTTACGTGCTCACTCTGA 1435
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1373 GTGGATTGAATGTGTTGGGATTGCAGATAGGTCTGCTTACGACTTACGTGCTCACTCTGA 1432
Query 1436 CAAAAGTGGCGTTCCTCTAGTGGCTGAAGAGAAATTTGCAGAACCTAAAGAAGTAGAGAA 1495
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 CAAAAGTGGTACTCCTCTTGTGGCTGAAGAGAAATTTGCAGAACCTAAAGAAGTAGAGAA 1492
Query 1496 ACTTGTGATAACACCTGTGAAGAAAGAACTGGGTCTTGCATTCAAGGGAAATCAAAAGAA 1555
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 ACTTGTGATAACTCCTGTGAAGAAAGAACTGGGTCTTGCATTCAAGGGAAATCAAAAGAA 1552
Query 1556 TGTGGTTGAATCTTTGGAGGCGATGAATGAAGAAGAAGCTATGGAGATGAAAGCAAGCCT 1615
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1553 TGTGGTTGAATCTTTGGAGGCGATGAATGAGGAAGAAGCTATGGAGATGAAAGCAACCCT 1612
Query 1616 GGAATCCAAAGGGGAAGTGGAGTTTTACGTGTGTACCCTAAATAAAACCGTGAGCATCAA 1675
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 1613 GGAATCCAAAGGGGAAGTGGAGTTTTACGTGTGTACCCTAAAGAAAAGCGTGAACATCAA 1672
Query 1676 GAAGAACATGGTGTCTATATCAAAGGAGAAGAAGAAAGAGCACCAGCGGGTTTTCACTCC 1735
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GAAAAACATGGTGTCTATATCAAAGGAGAAGAAGAAAGAGCACCAGCGGGTTTTCACTCC 1732
Query 1736 ATCAGTGATTGAACCATCGTTTGGGATTGGTCGGATCATATATTGTCTGTATGAGCATTG 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 ATCAGTGATTGAACCATCGTTTGGGATTGGTCGGATCATATATTGTCTGTATGAGCATTG 1792
Query 1796 TTTCAGCACTAGGCCGAGCAAAGCCGGGGATGAACAGTTGAACTTGTTCCGTTTCCCTCC 1855
||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1793 TTTCAGCACAAGGCCAAGCAAAGCAGGGGATGAGCAGTTGAACTTGTTCCGTTTCCCTCC 1852
Query 1856 TCTTGTAGCTCCCATCAAGTGCACGGTTTTTCCGCTTGTTCAGAACCAACAATTCGAGGA 1915
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1853 TCTTGTAGCTCCCATCAAGTGCACGGTTTTCCCGCTTGTTCAGAACCAACAATTCGAGGA 1912
Query 1916 AGCAGCCAAAGTTATTTCTAAGGAACTCGCTTCTGTCGGTATCTCCCATAAGATTGACAT 1975
|| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1913 AGTAGCCAAAGTTATTTCCAAGGAACTCGCCTCTGTCGGTATCTCCCATAAGATTGACAT 1972
Query 1976 CACTGGTACATCGATAGGGAAGAGATATGCGAGAACCGATGAGCTTGGAGTGCCATTTGC 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 CACTGGTACATCGATAGGGAAGAGATATGCGAGAACCGATGAGCTTGGAGTGCCATTTGC 2032
Query 2036 AATAACCGTGGACTCAGATGCATCAGTCACAATCAGGGAAAGAGACAGCAAAGATCAAGT 2095
|||||| |||||||| ||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct 2033 AATAACAGTGGACTCGGATACATCAGTGACAATCAGAGAAAGAGACAGCAAAGATCAAGT 2092
Query 2096 CCGAGTCAGCTTGAAGGAGGCAGCTTCCGTTGTGAGTTCAGTCTCAGAGGGGAAAATGAC 2155
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2093 CCGAGTCACCTTGAAGGAGGCAGCTTCCGTTGTGAGCTCAGTCTCAGAGGGGAAAATGAC 2152
Query 2156 ATGGCAAGACGTCTGGGCAAGCTTTCCTCACCACTCTTCTGCTGCTGCAGACGAGTAGCT 2215
||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 2153 GTGGCAAGACGTCTGGGCAACCTTCCCTCACCATTCTTCTGCTGCTGCAGACGAGTAGCT 2212
Query 2216 AGCTCCTTGTTTTTT 2230
|||||||||||||||
Sbjct 2213 AGCTCCTTGTTTTTT 2227
> AT1G29870.1 | Symbols: | tRNA synthetase class II (G, H, P and
S) family protein | chr1:10456902-10458782 REVERSE LENGTH=1392
Length=1392
Score = 1031 bits (558), Expect = 0.0
Identities = 1029/1249 (82%), Gaps = 62/1249 (5%)
Strand=Plus/Plus
Query 358 ACCGTGAGGCTTTTCGAAAAGCTGTTGTCAACACTCTGGAGCGGCGTTTGTTC-TATATC 416
||||||||| |||||| |||| || ||||| ||||| || |||| ||||||| | ||
Sbjct 167 ACCGTGAGGATTTTCGGGAAGCAGTGGTCAAAACTCTCGATCGGCTTTTGTTCGTCCAT- 225
Query 417 CCTTCGTTT-AAGATCTA-CAGTGGCGTCGCTGGACTTTTTGATTAT-GGTCCTCCTGGC 473
|| ||| | ||||| || ||||||||||||||||| |||| | ||||||| |||
Sbjct 226 AAATC-TTTCGATATCTACCA-TGGCGTCGCTGGACTTTACGATT-TCGGTCCTCATGG- 281
Query 474 T-GTGCTATT-AAATCCAATGTCCTGAGCTTTTGGCGTCAA-CATTTCATTCTTGAGGAG 530
| || || || || | ||| | || ||| | |||||| || ||| || ||| |||
Sbjct 282 TCGTACTGTTGAACT-TAATATACTTAGCCTCTGGCGT-AAGTGTTTTGTTGATGAAGAG 339
Query 531 AACATGCTAGAAGTTGATTGTCCATG-TGTGACACCAGAGGTTGTTCTCAAGGCATCTGG 589
||||| | || |||| |||| || | | |||||||||||| ||| |||| ||||||||
Sbjct 340 GACATGATGGAGGTTGCTTGTACA-GCTTTGACACCAGAGGCCGTTTTCAACGCATCTGG 398
Query 590 GCATGTTGATAAGTTCACTGATCTTATGGTGAAGGATGA-GAAAACTGGAACATGTT-AC 647
|||||| | |||||||||||||||||||| |||||||| | | | |||| ||| || ||
Sbjct 399 GCATGTAAAAAAGTTCACTGATCTTATGGTCAAGGATGAGGTAGA-TGGAGCAT-TTCAC 456
Query 648 CGTGCGGACCACTTGCTC-AAGGATTATTGCACCGACAAGCTG-GAGAAAGATCTTACCA 705
||||||||||||||| || || | |||||| || || | | ||||||||| |||||
Sbjct 457 CGTGCGGACCACTTGGTCAAAAG-TTATTG---TGA-AAACCGAAAGAAAGATCCTACCA 511
Query 706 TCTCTGCTGAGAATGCTGCAGAATTGAAGGATGTTCTTGCTGTTATGGAAAATTTTTCTC 765
||||||||||||||||||| |||||| | | ||| | ||| | ||||| || |||||
Sbjct 512 TCTCTGCTGAGAATGCTGCTGAATTGGATAAAGTTATAGCTCATGTGGAAGATCTTTCTG 571
Query 766 CTGAACAGCTAGGTGCCAAGATAAAGGAGT-ACGGGAT-CACTGCTCCAGACACGAAGAA 823
||||| |||| |||| || | | ||| | || | | ||| ||||||| |||||||||
Sbjct 572 CTGAAGAGCTTGGTG--GAG-T-ATGGAATCAC-TGCTCCACAGCTCCAGTCACGAAGAA 626
Query 824 TCCACTTTCTGATCCT--T-ACCCCTTTAACTTGATGTTTCAAACATCCATTGGCCCATC 880
|||||||||| ||||| | |||||| ||||||||||||||||| ||| |||| ||
Sbjct 627 TCCACTTTCTCATCCTCCTCGCCCCTTCAACTTGATGTTTCAAACTTCCTTTGGAGCAAG 686
Query 881 TGGTTTGATTCCT-GGTTACATGCGTCCTGAAACTGCTCAAGGCA-TTTTTGTGAACTTT 938
||||| | || | |||||| |||||||||||||||||||||||| |||||| |||||
Sbjct 687 TGGTTCG-TTGATAGGTTACTTGCGTCCTGAAACTGCTCAAGGCAGTTTTTG-CAACTTC 744
Query 939 AAGGACTT-GTACT-ATTACAATGGGAAG-AAACTTCCTTTTGCCGCGGCTCAAATTGGT 995
||||| || || | ||| |||||| || |||||||| ||||||| ||||||| |||||
Sbjct 745 AAGGA-TTATTA-TAATTTGAATGGG-AGAAAACTTCCGTTTGCCGTGGCTCAAGTTGGT 801
Query 996 CAAGCCTTTAGAAATGAGATATCTCCTCGACAAGGGCTTCTTAGAGTTCGTGAATTCACA 1055
| || |||||| |||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct 802 CGAGTCTTTAGGAATGAGATATCTCCACGTCAAGGGCTTCTTAGAACTCGTGAATTCACT 861
Query 1056 CTGGCAGAAATTGAGCACTTCGTTGATCCTGAGAATAAGTCACATCCTAAGTTCTCTGAT 1115
|||||||||||||||||||| ||| | |||||| ||||||||||| ||||||||||||||
Sbjct 862 CTGGCAGAAATTGAGCACTTTGTTCACCCTGAGCATAAGTCACATTCTAAGTTCTCTGAT 921
Query 1116 GTAGCAAAA-TTGGAATTCCTTATGTTCCCAAGGGAAGAAC---AAATGTCTGGCCAATC 1171
||||||||| || ||| |||||||||| ||||| ||||||| ||| |||||||||
Sbjct 922 GTAGCAAAACTT-GAACTCCTTATGTTTCCAAGAGAAGAACAAGAAAAACCTGGCCAATT 980
Query 1172 TGCAAAAAAG-CTTTGCCTCGGTGAAGCTGTTTCCAA-GGGTACTGTGAACAATGAAACT 1229
||| |||||| |||||||| || ||||||||| | || ||| | |||||||| ||| |||
Sbjct 981 TGC-AAAAAGACTTTGCCTTGGCGAAGCTGTTGCTAAGGGGCA-TGTGAACAGTGAGACT 1038
Query 1230 CTTGGATACTTCATTGGGAGAGTGTATCTTTTCCTTACT-CGTCTTGGCATAGACAAGGA 1288
|| |||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 1039 CTAGGATTCTTCATTGGGAGAGTGTATCTTTTCCTTA-TCCGTCTTGGAATAGACAAGGA 1097
Query 1289 ACGGCTGCGCTTCCGTCAGCATCTAGCAAATGAAATGGCCCACTATGCAGCAGATTGTTG 1348
||| |||||||||||||| ||||| |||||||||||||| ||||||||| | ||||||||
Sbjct 1098 ACGCCTGCGCTTCCGTCATCATCTTGCAAATGAAATGGCACACTATGCAACCGATTGTTG 1157
Query 1349 GGATGCTGAAATTGAGAGTTCATATGGGTGGATTGAATGTGTTGGGATTGCAGATAGGTC 1408
|||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1158 GGATGCTGAAATTGAGTGTTCATATGGTTGGATTGAATGTGTTGGAATTGCAGATAGGTC 1217
Query 1409 TGCA-TACGACTTACGTGCTCACTCTGACAAAAGTGGCGTTCCTCTAGTGGCTGAAGAGA 1467
|| | |||||||||||||||||||| || ||||||||| | |||| |||||| ||||||
Sbjct 1218 TG-ATTACGACTTACGTGCTCACTCCGAAAAAAGTGGCCATGCTCTTGTGGCTCAAGAGA 1276
Query 1468 AATTTGCAGAACCTAAAGAAGTAGAGAAACTTG-TGATAACACCTGTGAAGAAAGAACTG 1526
|| ||||||| |||| ||||||||||||||||| | || ||||||| || ||||||| ||
Sbjct 1277 AACTTGCAGAGCCTATAGAAGTAGAGAAACTTGCT-ATTACACCTGAGATGAAAGAATTG 1335
Query 1527 GGTCTTGCATTCAAGGGAAATCAAAAGAATGTGGTTGAATCTTTGGAGG 1575
|||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1336 GGTCCTGCATTCAAGGGAAATCAAAAGAATGTGGTTGAAGCTTTGGAGG 1384
> AT3G44740.1 | Symbols: | Class II aaRS and biotin synthetases
superfamily protein | chr3:16295970-16297805 REVERSE LENGTH=1224
Length=1224
Score = 769 bits (416), Expect = 0.0
Identities = 565/636 (89%), Gaps = 14/636 (2%)
Strand=Plus/Plus
Query 939 AAGGACTTGTACTATTACAATGGGAAGAAACTTCCTTTTGCCGCGGCTCAAATTGGTCAA 998
||||||||||| || |||||||||| |||| |||| ||||| || |||||||||||||||
Sbjct 315 AAGGACTTGTATTACTACAATGGGAGGAAATTTCCCTTTGCTGCTGCTCAAATTGGTCAA 374
Query 999 GCCTTTAGAAATGAGATATCTCCTCGACAAGGGCTTCTTAGAGTTCGTGAATTCACACTG 1058
||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| |||
Sbjct 375 -CCTTTAGAAATGAGATATCTCATCGTCAAGGGCTTCTTAGAGTTTGTGAATTCACGCTG 433
Query 1059 GCAGAAATTGAGCACTTCGTTGATCCTGAGAATAAGTCACATCCTAAGTTCTCTGATGTA 1118
|||||||||||||| || |||||||||| ||||||||||||||| || ||||||||||||
Sbjct 434 GCAGAAATTGAGCATTTTGTTGATCCTGGGAATAAGTCACATCCGAAATTCTCTGATGTA 493
Query 1119 GCAAAATTGGAATTCCTTATGTTCCCAAGGGAAGAACAAATGTCTGGCCAATCTGC-AAA 1177
||||| || |||||||||||||| ||||| || ||||||||||||||||||||||| |||
Sbjct 494 GCAAATTTTGAATTCCTTATGTTTCCAAGAGAGGAACAAATGTCTGGCCAATCTGCGAAA 553
Query 1178 AAAGCTTTGCCTCGGTGAAGCTGTTTCCAAGGGTACTGTGAACAATGAAACTCTTGGATA 1237
||| |||||||| || |||| |||| ||||||| ||||||||||| |||||| | || ||
Sbjct 554 AAA-CTTTGCCTTGGCGAAGTTGTTGCCAAGGGAACTGTGAACAAAGAAACTGTAGGCTA 612
Query 1238 CTTCATTGGGAGAGTGTATCTTTTCCTTACT-CGTCTTGGCATAGACAAGGAACGGCTGC 1296
|||||||| ||||||||||||||||||| | |||||||||| ||||||||||| | |||
Sbjct 613 CTTCATTGCGAGAGTGTATCTTTTCCTT-GTCCGTCTTGGCACAGACAAGGAACAGTTGC 671
Query 1297 GCTTCCGTCAGCATCTAGCAAATGAAATGGCCCACTATGCAGCAGATTGTTGGGATGCTG 1356
| ||||| |||||| | |||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 672 GTTTCCGCCAGCATTTTGCAAATGAAATGGCCCGCTATGCTGCAGATTGTTTGGATGCTG 731
Query 1357 AAATTGAGAGTTCATATGGGTGGATTGAATGTGTTGGGATTGCAGATAGGTCTGCATACG 1416
|| |||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 732 AATTTGAGAGTTCATATGGGTGGATTGAATGTGTTGGTATAGCAGATAGGTCTGCATTCG 791
Query 1417 ACTTACGTGCTCACTCTG-AC-AAAAGTGGCGTTCCTCTAGTGGCTGAAGAGAAATTTGC 1474
|||||||||| ||||| | | |||||| || | | | |||||||| ||||||||| |
Sbjct 792 ACTTACGTGCCCACTCGGTAGGAAAAGTTGC-T-C-T---GTGGCTGA-GAGAAATTTCC 844
Query 1475 AGAACCTAAAGAAGTAGAGAAACTTGTGATAACACCTGTGAAGAAAGAACTGGGTCTTGC 1534
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 845 AGAACCTAAAGAAGTAGAGAAACTTGTGATTACTCCTGTGAAGAAAGAACTGGTTCTTGC 904
Query 1535 ATTCAAGGGAAATCAAAAGAATGTGGTTGAATCTTT 1570
||||||||||||||||||| |||| ||| |||||||
Sbjct 905 ATTCAAGGGAAATCAAAAGCATGTCGTTAAATCTTT 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110893003905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5