BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473203
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-b... 1604 0.0
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B b... 1587 0.0
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophy... 1371 0.0
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light h... 1057 0.0
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlor... 928 0.0
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chloro... 152 6e-36
> AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-binding
protein 2 | chr1:10474784-10475959 REVERSE LENGTH=1176
Length=1176
Score = 1604 bits (868), Expect = 0.0
Identities = 965/1012 (95%), Gaps = 5/1012 (0%)
Strand=Plus/Plus
Query 1 ACTCTCACTCACAAGTTAGTCACCaaaaaaaaaaaaacacaaaaaaTTTTCAATGGCCGC 60
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 16 ACTCTCACTCACAAGTTAGTCATAAAAAAAAAAAAAACACAAAAAAGTTTCAATGGCCGC 75
Query 61 CTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAACCTTTCCCCCGC 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 76 CTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAACCTTTCCCCTGC 135
Query 121 GGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 GGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAA 195
Query 181 GGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTC 240
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 196 GGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTC 255
Query 241 TGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGC 300
||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 256 TGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGATGGGACACAGC 315
Query 301 CGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAG 360
|| || || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAG 375
Query 361 CAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGG 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 376 CAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCCAGGAACGG 435
Query 421 AGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGG 480
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 436 AGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGATGGAGG 495
Query 481 GCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTTGGCGATTTGGGC 540
||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 496 GCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTGGCCATTTGGGC 555
Query 541 CACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATT 600
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 556 CACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGGAAATGGGCCATT 615
Query 601 GGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTAC 660
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 616 GGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGTTTCGACCCATTGGGTTTGGCTAC 675
Query 661 CGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTAT 720
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 676 CGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAACGGAAGATTGGCTAT 735
Query 721 GTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAA 780
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 736 GTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGACCGATAGAGAA 795
Query 781 CCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTT 840
||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||||
Sbjct 796 CCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCCTTTGCCACCAACTT 855
Query 841 TGTTCCCGGAAAGTGAGCCAAGTTTTATCCGTTTGTAATTTGCTTTT-TT-CAATCTTTT 898
|||||||||||||||||||||||| |||| ||||||||||| ||||| || |||||||||
Sbjct 856 TGTTCCCGGAAAGTGAGCCAAGTTCTATCTGTTTGTAATTTACTTTTCTTTCAATCTTTT 915
Query 899 GAATTCGAGTGAGAGACAGGAGGAGAAAGAGCAGGTTTGTGTTTGTGATGGATGGTTTGA 958
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 916 GAATTCGAGTGAGAGACAGGAGGAGAAAGAGTAGGTTTGTGTTTGTGGTGGATGGTA-GA 974
Query 959 GACTTTCA-ATGTAAATTTGCAA-GACTTTGTATGATTTGTCATTAATCAAA 1008
|||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 975 GACTTTCAGATGTAAATTTGCAAAGACTTTGTATGATTTGTCATTAATCAAA 1026
> AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472280-10473299 REVERSE LENGTH=1020
Length=1020
Score = 1587 bits (859), Expect = 0.0
Identities = 964/1013 (95%), Gaps = 13/1013 (1%)
Strand=Plus/Plus
Query 1 ACTCTCACTCACAAGTTAGTCACCaaaaaaaaaaaaacaca-aaaaaTTTTCAATGGCCG 59
||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct 1 ACTCTCACTCACAAGTTAGTCACCAAAAAAAAAAAAAAACACAAAAAGTTTCAATGGCCG 60
Query 60 CCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAACCTTTCCCCCG 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCCACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAACCTTTCCCCCG 120
Query 120 CGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAA 179
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGCATCTGAAGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAA 180
Query 180 AGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCT 239
||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 181 AGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCT 240
Query 240 CTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCG 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGGCGAGTCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCG 300
Query 300 CCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACA 359
| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGGACTTTCAGCTGATCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACA 360
Query 360 GCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACG 419
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 361 GCAGGTGGGCTATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCTAGGAACG 420
Query 420 GAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAG 479
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 GAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTTAGCGATGGAG 480
Query 480 GGCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTTGGCGATTTGGG 539
| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 481 GACTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATTTTGGCCATTTGGG 540
Query 540 CCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCAT 599
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 541 CCACTCAAGTTATCTTGATGGGAGCTGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCGT 600
Query 600 TGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGGGT-TTGGCT 658
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 601 TGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTGGGTCTT-GCT 659
Query 659 ACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCT 718
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACCGACCCAGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCT 719
Query 719 ATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAG 779
Query 779 AACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAAC 838
||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 780 AACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCAACCAAC 839
Query 839 TTTGTTCCCGGAAAGTGAGCCAAGTTTTATCCGTTTGTAATTTGCTTTT-TT-CAATCTT 896
||||||||||||||||||||||||||||||| ||||||| ||||||||| || || ||||
Sbjct 840 TTTGTTCCCGGAAAGTGAGCCAAGTTTTATCAGTTTGTATTTTGCTTTTCTTTCAGTCTT 899
Query 897 TTGAATTCGAGTGAGAGACAGGAGGAGAAAGAGCAGGTTTGTGTTTGTGATGGATGGTTT 956
|||||||||||||||||||| |||||||||||| ||||| || | ||||||| | ||
Sbjct 900 TTGAATTCGAGTGAGAGACATGAGGAGAAAGAGAAGGTT-GTAT--GTGATGG-T--TT- 952
Query 957 GAGACTTTCA-ATGTAAATTTGCAAGACTTTGTATGATTTGTCATTAATCAAA 1008
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GAGACTTTCAGATGTAAATTTGCAAGACTTTGTATGATTTGTCATTAATCAAA 1005
> AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478005-10479048 FORWARD
LENGTH=1044
Length=1044
Score = 1371 bits (742), Expect = 0.0
Identities = 794/820 (97%), Gaps = 0/820 (0%)
Strand=Plus/Plus
Query 50 TCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAC 109
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 64 TCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGTAAGGCCGTCAAG 123
Query 110 CTTTCCCCCGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 169
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CTTTCCCCCGCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 183
Query 170 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 229
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 243
Query 230 GGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 289
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GGTCCATTCTCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 303
Query 290 TGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 349
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 304 TGGGACACCGCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGAACCGTGAACTAGAA 363
Query 350 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTG 409
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 364 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 423
Query 410 GCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTTC 469
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 424 GCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTC 483
Query 470 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTTG 529
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 484 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTG 543
Query 530 GCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 589
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 544 GCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 603
Query 590 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTG 649
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 604 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTG 663
Query 650 GGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 709
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 664 GGTTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 723
Query 710 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGA 769
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 724 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGA 783
Query 770 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTC 829
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 784 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTAACAACAACGCATGGGCCTTC 843
Query 830 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTATC 869
||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTATC 883
> AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522524-14523568 REVERSE
LENGTH=1045
Length=1045
Score = 1057 bits (572), Expect = 0.0
Identities = 754/842 (90%), Gaps = 12/842 (1%)
Strand=Plus/Plus
Query 22 ACCaaaaaaaa-aaaa-ac-acaa-aaa-aTTTTCAATGGCCGCCTCAACAATGGCTCTC 76
||||||||||| |||| || | || ||| ||| | |||||| ||||||| |||||| |
Sbjct 21 ACCAAAAAAAAGAAAACACAAAAACAAAGATTAT-AATGGCTTCCTCAACCATGGCTTTG 79
Query 77 TCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAACCTTTCCCCCGCGGCATCAGAAGTCCTT 136
|||||||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct 80 TCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAA------GCCTGCCGCATCAGATGTCCTC 133
Query 137 GGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAAGGGTCCATCAGGCAGC 196
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 134 GGAAGCGGCCGTGTGACCATGAGGAAGACTGTCGCCAAGCCAAAGGGTCCATCAGGCAGC 193
Query 197 CCATGGTACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCGAGC 256
|||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct 194 CCATGGTACGGATCTGACCGAGTCAAGTACTTGGGTCCATTCTCCGGCGAGCCCCCGAGC 253
Query 257 TACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCCGGACTCTCAGCCGAC 316
||||||||||| ||||||||||| |||||||||||||||||||| || || || ||||||
Sbjct 254 TACCTTACCGGTGAGTTCCCCGGTGACTACGGATGGGACACCGCTGGTCTATCCGCCGAC 313
Query 317 CCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAGCAGGTGGGCCATGCTC 376
|| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 314 CCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCTC 373
Query 377 GGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGGAGTCAAGTTCGGAGAG 436
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 374 GGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAGAA 433
Query 437 GCCGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGA 496
|| ||||||||||||||||||||||||||||||||||| ||||| | || ||||||||
Sbjct 434 GCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGGGC 493
Query 497 AACCCTAGCTTAGTCCACGCTCAGAGCATCTTGGCGATTTGGGCCACTCAAGTTATCTTG 556
||||| ||||| |||||||||||||||||||| || |||||||| |||||||||||| |
Sbjct 494 AACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCCTC 553
Query 557 ATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGAC 616
|||||||| |||||||||||||||||||| ||| |||| ||||||||||| || ||||||
Sbjct 554 ATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGGAC 613
Query 617 TTGCTTTACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTACCGACCCAGAGGCCTTC 676
||||||||||| ||||| ||||||||||||||||| | ||||| ||||| ||||| |||
Sbjct 614 TTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGCTTTC 673
Query 677 GCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGA 736
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 674 GCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGGA 733
Query 737 TTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTTG 796
||||||||||||||||| ||||| || |||||||| | |||||||| || |||||||||
Sbjct 734 TTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAGAACCTCGCCGACCATTTG 793
Query 797 GCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTGA 856
||||| ||||| | ||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 794 GCCGACCCAGTCAACAACAACGCTTGGGCCTTCGCCACCAACTTCGTCCCCGGAAAGTGA 853
Query 857 GC 858
||
Sbjct 854 GC 855
> AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein
complex II subunit B1 | chr2:14524756-14525763
FORWARD LENGTH=1008
Length=1008
Score = 928 bits (502), Expect = 0.0
Identities = 708/809 (88%), Gaps = 7/809 (1%)
Strand=Plus/Plus
Query 51 CAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCG-CCGGAAAGGCTGTGAAC 109
||||||||||||| ||||||||||||||||| |||| ||| | |||||||||| || ||
Sbjct 61 CAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTTTGACCGGAAAGGCCGTTAAG 119
Query 110 CTTTCCCCCGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAG-GAAGACTGT 168
|| ||||| ||||| || ||||| |||||| |||||| | || ||| | ||| |
Sbjct 120 CTATCCCCGGCGGCCTCCGAAGTATTTGGAACCGGCCGAATCACCATGCGCAAAG-C--C 176
Query 169 TGCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTT 228
| ||||||| | |||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 177 T-CCAAGCCCACCGGTCCATCCGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTT 235
Query 229 GGGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGG 288
||| |||||||| || ||||| ||||||||||| || |||||||||||||| || |||||
Sbjct 236 GGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAGTTCCCCGGTGATTACGG 295
Query 289 ATGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGA 348
|||||||| ||||| || || ||||| |||||||| ||||| |||||||||||||||||
Sbjct 296 GTGGGACACTGCCGGTCTATCCGCCGATCCCGAGACCTTCGCTAGGAACCGTGAGCTAGA 355
Query 349 AGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTT 408
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 AGTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATT 415
Query 409 GGCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTT 468
||| ||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 416 GGCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTT 475
Query 469 CAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTT 528
|||||| ||||| | || |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 476 CAGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTT 535
Query 529 GGCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGG 588
|| |||||||| |||||||||||| | |||||||| ||||| |||||||||||||| ||
Sbjct 536 AGCCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGG 595
Query 589 AAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATT 648
| |||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 596 AGATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGGAGCTTCGACCCATT 655
Query 649 GGGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGG 708
||| | ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 656 GGGCCTCGCTACTGACCCCGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGG 715
Query 709 AAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGG 768
||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 716 AAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGG 775
Query 769 ACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTT 828
|||| | |||||||| || ||||| ||||| |||||||| | |||||| |||||||||||
Sbjct 776 ACCGTTGGAGAACCTCGCGGACCACTTGGCTGATCCAGTCAACAACAATGCATGGGCCTT 835
Query 829 CGCCACCAACTTTGTTCCCGGAAAGTGAG 857
||| |||||||| || |||||||||||||
Sbjct 836 CGCTACCAACTTCGTCCCCGGAAAGTGAG 864
> AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorophyll
B-binding protein 3 | chr5:22038273-22039568 FORWARD
LENGTH=1134
Length=1134
Score = 152 bits (82), Expect = 6e-36
Identities = 310/416 (75%), Gaps = 32/416 (8%)
Strand=Plus/Plus
Query 443 TGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCT 502
|||||||| ||||||||||| |||||| ||| || || | || ||||| || |||||
Sbjct 536 TGGTTCAAAGCCGGTTCACAAATCTTCTCCGAAGGCGGTTTGGACTACTTAGGCAACCCA 595
Query 503 AGCTTAGTCCACGCTCAGAGCATCTT-GGCGAT--TTGGGCCACTCAAGTTATCTTGATG 559
| | ||||||| ||||||||||| || | || | || ||| | ||||| ||| | |||
Sbjct 596 AACCTAGTCCATGCTCAGAGCATTTTAGCCG-TCCTT-GGCTTC-CAAGTCATCCTCATG 652
Query 560 GGAGCCGTTGAAGGCTACAG-AGTCGCA-GGAAATG--GGCCATTGG-GAGAGGCCGAGG 614
|| |||||||| | | | | || | || || || |||| || ||| | | |
Sbjct 653 GGTTTGGTTGAAGGTTTCCGCA-TC-AACGGTCTTGATGG-TGTTGGCGA-AGG-CAACG 707
Query 615 ACTTGCTTTACCCCGGT-GG---TAGCTTCGACCCATTGGGTTTGGCT-ACCGACCCAGA 669
||||| ||||||||| || || ||| ||||| |||||| | ||| | || ||||
Sbjct 708 ACTTG---TACCCCGGTGGGCAATA-CTTTGACCCGTTGGGTCTCGCTGA-TGATCCAGT 762
Query 670 GGCCTTCGCTGAG-TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTA 728
| || |||||| || |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 763 TACTTTTGCTGAGCTT-AAGGTGAAAGAGATCAAGAACGGAAGATTGGCTATGTTCTCTA 821
Query 729 TGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCT- 787
||||||| ||||| |||||||||||||| ||||| || || || | ||||| || ||
Sbjct 822 TGTTTGGCTTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTC-CTT 880
Query 788 GACCAT-TTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTG 842
|||||| ||| | | || ||| | ||||| || ||||| ||||| || || ||||
Sbjct 881 GACCATCTTGACA-ACCCTGTTGCTAACAATGCGTGGGCTTTCGCAACTAAGTTTG 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5