BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473204
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophy... 1629 0.0
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B b... 1306 0.0
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-b... 1271 0.0
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light h... 1014 0.0
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlor... 935 0.0
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chloro... 139 5e-32
> AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478005-10479048 FORWARD
LENGTH=1044
Length=1044
Score = 1629 bits (882), Expect = 0.0
Identities = 965/1005 (96%), Gaps = 5/1005 (0%)
Strand=Plus/Plus
Query 1 ACCCATTTCTTGGCTTACAACAACAACTCTTAAACGTTTTACTTTGTGCT--AC-ACTCA 57
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1 ACCCATTTCTTGGCTTACAACAACAAATCTTAAACGTTTTACTTTGTGCTGCACTACTCA 60
Query 58 ACCTCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTC 117
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 ACCTCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGTAAGGCCGTC 120
Query 118 AAGCTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACA 177
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCTTTCCCCCGCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACT 180
Query 178 ACTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTAC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTAC 240
Query 238 TTGGGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTAC 297
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGGGTCCATTCTCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTAC 300
Query 298 GGATGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTA 357
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 301 GGATGGGACACCGCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGAACCGTGAACTA 360
Query 358 GAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTT 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTT 420
Query 418 TTGGCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATC 477
||||| || ||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 421 TTGGCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATC 480
Query 478 TTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATC 537
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 TTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATT 540
Query 538 TTGGCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCA 597
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TTGGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCA 600
Query 598 GGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCA 657
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 GGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCA 660
Query 658 TTGGGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAAC 717
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 TTGGGTTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAAC 720
Query 718 GGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAG 777
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 GGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAG 780
Query 778 GGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCC 837
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 GGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTAACAACAACGCATGGGCC 840
Query 838 TTCGCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTTATCTGTATTTTGCTTCAGT 897
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 841 TTCGCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTT-ATCTGTATTTTGCTTCAGT 899
Query 898 CTTTGCTTCGTGTGAGTGAGAGGAGAAAGAGAGGTTGTATAGATGTAAAATTTGCAAGAC 957
|||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 900 CTTTGCTTCGTGAGTGTGAGAGGAGAAAGAGAGCTTGTTTAGATGTAAAATTTGCAAGAC 959
Query 958 TTTGTGTAATTTTTCATTAATCAAATAACTCGTTTTTCTCTCAAA 1002
||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 960 TTTGTATT-TTTTTCATTAATCAAATAACTCGTTTTTCTCTCAAA 1003
> AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472280-10473299 REVERSE LENGTH=1020
Length=1020
Score = 1306 bits (707), Expect = 0.0
Identities = 834/893 (93%), Gaps = 17/893 (2%)
Strand=Plus/Plus
Query 61 TCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTCAAG 120
|||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||
Sbjct 51 TCAATGGCCGCCTCCACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAC 110
Query 121 CTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACAACT 180
||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |
Sbjct 111 CTTTCCCCCGCGGCATCTGAAGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 170
Query 181 GCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 240
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 171 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 230
Query 241 GGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 300
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GGTCCATTCTCTGGCGAGTCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 290
Query 301 TGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 360
||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 291 TGGGACACCGCTGGACTTTCAGCTGATCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 350
Query 361 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTG 420
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 351 GTTATCCACAGCAGGTGGGCTATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 410
Query 421 GCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATCTTC 480
|| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 411 GCTAGGAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTT 470
Query 481 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATCTTG 540
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 471 AGCGATGGAGGACTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATTTTG 530
Query 541 GCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 600
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 531 GCCATTTGGGCCACTCAAGTTATCTTGATGGGAGCTGTTGAAGGCTACAGAGTCGCAGGA 590
Query 601 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTG 660
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 591 AATGGGCCGTTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTG 650
Query 661 GGT-TTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGG 719
||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 651 GGTCTT-GCTACCGACCCAGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGG 709
Query 720 AAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGG 769
Query 780 ACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTT 839
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 770 ACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTT 829
Query 840 CGCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTT-T-A-TCTGTATTTTGCTT--C 894
||| |||||||||||||||||||||||||||||||||| | | | |||||||||||| |
Sbjct 830 CGCAACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTATCAGTTTGTATTTTGCTTTTC 889
Query 895 ----AGTCTTT-GC-TTCGTGTGAGTGA---GAGGAGAAAGAGA-GGTTGTAT 937
||||||| | |||| ||||| || ||||||||||||| ||||||||
Sbjct 890 TTTCAGTCTTTTGAATTCGAGTGAGAGACATGAGGAGAAAGAGAAGGTTGTAT 942
> AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-binding
protein 2 | chr1:10474784-10475959 REVERSE LENGTH=1176
Length=1176
Score = 1271 bits (688), Expect = 0.0
Identities = 779/824 (95%), Gaps = 1/824 (0%)
Strand=Plus/Plus
Query 61 TCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTCAAG 120
||||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||
Sbjct 65 TCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAAC 124
Query 121 CTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACAACT 180
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 125 CTTTCCCCTGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 184
Query 181 GCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 240
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 185 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 244
Query 241 GGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 300
|| ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 245 GGTCCATTCTCTGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGA 304
Query 301 TGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 360
|||||||| || || || || || ||||||||||||||||||||||||||||||||||||
Sbjct 305 TGGGACACAGCTGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 364
Query 361 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTG 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 365 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 424
Query 421 GCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATCTTC 480
|||||||||||||||||||| |||||||| |||||||||||||| || || |||||||||
Sbjct 425 GCCAGGAACGGAGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTC 484
Query 481 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATCTTG 540
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 485 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTG 544
Query 541 GCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 600
|| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 545 GCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGGA 604
Query 601 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTG 660
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 605 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGTTTCGACCCATTG 664
Query 661 GGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 665 GGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAACGGA 724
Query 721 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGA 780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 725 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGA 784
Query 781 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTC 840
|||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 785 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCCTTT 844
Query 841 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTTATCTGT 884
||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 845 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTCT-ATCTGT 887
> AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522524-14523568 REVERSE
LENGTH=1045
Length=1045
Score = 1014 bits (549), Expect = 0.0
Identities = 723/808 (89%), Gaps = 8/808 (1%)
Strand=Plus/Plus
Query 63 AATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTCAAGCT 122
|||||| |||||||||||||| | |||||||||||||||||||||||||| || |||
Sbjct 55 AATGGCTTCCTCAACCATGGCTTTGTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAG-- 112
Query 123 TTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACAACT-G 181
|| || |||||||| ||||| ||||||||||||||||| ||||||||||| | |
Sbjct 113 ----CCTGCCGCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGAC-TGTCG 167
Query 182 CCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGG 241
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 168 CCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGG 227
Query 242 GCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGAT 301
| |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 228 GTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGAT 287
Query 302 GGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAG 361
|||||||||| || || || |||||||| ||||| ||||| |||||||||||||||||||
Sbjct 288 GGGACACCGCTGGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 347
Query 362 TTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGG 421
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 348 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGG 407
Query 422 CCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATCTTCA 481
| ||||||||||| ||||||||||| || ||||||||||||||||| || ||||||||||
Sbjct 408 CTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCA 467
Query 482 GCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATCTTGG 541
|||| ||||| | || |||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 468 GCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 527
Query 542 CGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAA 601
| |||||||| |||||||||||| | |||||||| |||||||||||||||||||| |||
Sbjct 528 CCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAG 587
Query 602 ATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGG 661
|||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 588 ATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGG 647
Query 662 GTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAA 721
| | ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 648 GCCTCGCTACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAA 707
Query 722 GATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGAC 781
| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 708 GGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGAC 767
Query 782 CGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCG 841
| | |||||||| || |||||||||||||| ||||| | ||||||||| ||||||||||
Sbjct 768 CTTTGGAGAACCTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTCG 827
Query 842 CCACCAACTTTGTTCCCGGAAAGTGAGC 869
|||||||||| || ||||||||||||||
Sbjct 828 CCACCAACTTCGTCCCCGGAAAGTGAGC 855
> AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein
complex II subunit B1 | chr2:14524756-14525763
FORWARD LENGTH=1008
Length=1008
Score = 935 bits (506), Expect = 0.0
Identities = 727/835 (87%), Gaps = 9/835 (1%)
Strand=Plus/Plus
Query 37 TTTTACTTTGTGCTACACTC-AACCTCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCC 95
|||||| ||| || |||||| ||| ||||||||||||| || |||||||||||||| ||
Sbjct 36 TTTTAC-TTGCGCCACACTCTCACCGCAATGGCCGCCTCGACAATGGCTCTCTCCTCTCC 94
Query 96 TGCCTTCG-CCGGAAAGGCCGTCAAGCTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCG 154
|| ||| | ||||||||||||| ||||| ||||| ||||| || || || |||||| ||
Sbjct 95 TG-CTTTGACCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAGTATTTGGAACCG 153
Query 155 GCCGTGTGACAATGAG-GAAGACAACTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGG 213
|||| | || ||| | ||| | || ||||||| | || ||||| ||||||||||||
Sbjct 154 GCCGAATCACCATGCGCAAAG-C--CT-CCAAGCCCACCGGTCCATCCGGCAGCCCATGG 209
Query 214 TACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCGAGCTACCTT 273
|||||||| ||||| |||||||||||||| |||||||| || ||||| |||||||||||
Sbjct 210 TACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTC 269
Query 274 ACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCCGGACTCTCAGCCGACCCCGAG 333
|| |||||||||||||| || ||||| |||||||| ||||| || || ||||| ||||||
Sbjct 270 ACTGGAGAGTTCCCCGGTGATTACGGGTGGGACACTGCCGGTCTATCCGCCGATCCCGAG 329
Query 334 ACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCC 393
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 330 ACCTTCGCTAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCTCGGAGCC 389
Query 394 CTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTT 453
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || |||
Sbjct 390 CTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTT 449
Query 454 TGGTTCAAGGCCGGCTCTCAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCT 513
||||||||||| || || |||||||||||||| ||||| | || |||||||| |||||
Sbjct 450 TGGTTCAAGGCTGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGGGCAACCCG 509
Query 514 AGCTTGGTCCACGCTCAGAGCATCTTGGCGATTTGGGCCACTCAAGTTATCTTGATGGGA 573
|||||||||||||||||||||||||| || |||||||| |||||||||||| | ||||||
Sbjct 510 AGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCCTCATGGGA 569
Query 574 GCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTT 633
|| ||||| |||||||||||||| ||| |||| ||||||||||| || ||||||||||||
Sbjct 570 GCTGTTGAGGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGGACTTGCTT 629
Query 634 TACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTACCGACCCAGAGGCCTTCGCTGAG 693
||||| ||||| ||||||||||||||||| | ||||| ||||| ||||| ||||| |||
Sbjct 630 TACCCAGGTGGGAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGCTTTCGCGGAG 689
Query 694 TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTC 753
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 690 TTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTC 749
Query 754 GTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTTGGCCGAT 813
||||| ||||||||||| || ||||||||| | |||||||| || ||||| ||||| |||
Sbjct 750 GTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAACCTCGCGGACCACTTGGCTGAT 809
Query 814 CCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTGAG 868
||||| | |||||| |||||||||||||| |||||||| || |||||||||||||
Sbjct 810 CCAGTCAACAACAATGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAGTGAG 864
> AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorophyll
B-binding protein 3 | chr5:22038273-22039568 FORWARD
LENGTH=1134
Length=1134
Score = 139 bits (75), Expect = 5e-32
Identities = 182/232 (78%), Gaps = 14/232 (6%)
Strand=Plus/Plus
Query 631 CTT-TACCCCGGT-GG---TAGCTTCGACCCATTGGGTTTGGCT-ACCGACCCAGAGGCC 684
||| ||||||||| || || ||| ||||| |||||| | ||| | || |||| |
Sbjct 709 CTTGTACCCCGGTGGGCAATA-CTTTGACCCGTTGGGTCTCGCTGA-TGATCCAGTTACT 766
Query 685 TTCGCTGAG-TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTT 743
|| |||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 767 TTTGCTGAGCTT-AAGGTGAAAGAGATCAAGAACGGAAGATTGGCTATGTTCTCTATGTT 825
Query 744 TGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCT-GACC 802
||| ||||| |||||||||||||| ||||| || || || | ||||| || || ||||
Sbjct 826 TGGCTTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTC-CTTGACC 884
Query 803 AT-TTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTG 853
|| ||| | | || ||| | ||||| || ||||| ||||| || || ||||
Sbjct 885 ATCTTGACA-ACCCTGTTGCTAACAATGCGTGGGCTTTCGCAACTAAGTTTG 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5