BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473214
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29970.2 | Symbols: RPL18AA | 60S ribosomal protein L18A-1 |... 1402 0.0
AT1G29965.1 | Symbols: | Ribosomal protein L18ae/LX family pro... 808 0.0
AT2G34480.1 | Symbols: | Ribosomal protein L18ae/LX family pro... 584 5e-166
> AT1G29970.2 | Symbols: RPL18AA | 60S ribosomal protein L18A-1
| chr1:10498351-10501427 REVERSE LENGTH=1162
Length=1162
Score = 1402 bits (759), Expect = 0.0
Identities = 901/969 (93%), Gaps = 12/969 (1%)
Strand=Plus/Plus
Query 1 GGTTAATCGGATCTCAATTATGGACGAGGAGGCAGCAAAACCTAGAGAATCCACCGTGAA 60
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 98 GGTTAATCGGATCTCAATTATGGACGAAGAGGCAGCAAAACCTAGAGACTCCACCGTGAA 157
Query 61 TCAGCAACAACAACAATACTTA-TACGGAACGTTTCAAGGCGTTGCAAATTTTCCTCCTC 119
|||| ||||| |||||| || ||||||||||||||||||||||| ||||||||| |||
Sbjct 158 TCAG---CAACATCAATAC-TATTACGGAACGTTTCAAGGCGTTGCGAATTTTCCTACTC 213
Query 120 CGGCTCCGCCACCTCAATTTCTGCAACCGCATCATCCGATTGCTACGTTTCCTGGACATG 179
| |||| ||||| |||||| ||||||| || ||||||||| ||||||||||||||||||
Sbjct 214 CTACTCCACCACCGCAATTTATGCAACCACAGCATCCGATTACTACGTTTCCTGGACATG 273
Query 180 CTTATCAGAATCTCCAAGGTTTTTATGGTGGTTTTGTGAATTATGCTCAAGGTTTCCCAG 239
|||| || ||||||||||| | |||||||| |||||||||||||||||| |||||||
Sbjct 274 CTTACCAAAATCTCCAAGG---TCATGGTGGTGGTGTGAATTATGCTCAAGGATTCCCAG 330
Query 240 TTGTTGTT-TTAGATTATACAGTGGTTGAGGTGAGACCTATGATCGAGCATGAACTTCCT 298
|||||||| | |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 331 TTGTTGTTCCT-GATTATACAGTGGTTGAGGTGAGACCAATGATAGAGCATGAACTTCCT 389
Query 299 TGCTGTGGCTTGGGCATGGGCTGGTTTCTGTTTATTATGGGTTTCTTGTTCGGTGGGATC 358
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 390 TGTTGTGGCTTGGGCATGGGCTGGTTTCTGTTTATCATGGGCTTCTTGTTCGGTGGGATC 449
Query 359 CCTTGGTACCTTGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCATCGCGAGAAAGCT 418
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 450 CCTTGGTACCTCGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCACCGCGAGAAAGCT 509
Query 419 GGTTACATTGCCTGTTCAATCGCTCTTCACCAGTACCAAGTCGTAGGAAGAGCTCTCCCG 478
|||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 510 GGTTACGTTGCCTGTTCAATCGCACTGCACCAGTACCAAGTCGTAGGACGAGCTCTCCCG 569
Query 479 ACGGAGAAAGATGAGCAGCCGAAGATCTACAGGATGAAGCTTTGGGCTACGAACGAGGTT 538
||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||||||
Sbjct 570 ACGGAGAAAGATGAGCAACCAAAGATTTACAGGATGAAGCTATGGGCAACGAACGAGGTT 629
Query 539 CTTGCCAAATCCAAGTTCTGGTACTTCTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAAT 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 630 CTTGCCAAATCCAAGTTCTGGTACTACTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAAT 689
Query 599 GGACAGATGTTAGCTATCAACGAGATCTTTGAGAAGAACCCAACAACGATCAAGAATTTT 658
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GGACAGATGCTAGCCATCAACGAGATCTTTGAGAAGAACCCAACAACGATCAAGAATTTT 749
Query 659 GGAATCTGGTTGAGATACCAGAGTCGTACTGGTTACCATAACATGTACAAGGAGTTTCGT 718
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||
Sbjct 750 GGAATCTGGTTGAGATACCAGAGCCGTACAGGTTACCATAACATGTACAAAGAGTACCGT 809
Query 719 GACACAACTTTGAACGGAGCAGTGGAGCAAATGTACACTGAGATGGCGTCAAGACACAGA 778
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 GACACTACTTTGAATGGAGCAGTGGAGCAAATGTACACTGAGATGGCGTCAAGACACAGA 869
Query 779 GTCAGGTTCCCTTGCATTCAGATTATCAAGACAGCTACAGTCCCAGCCAAC-CTCTGCAA 837
|| ||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||
Sbjct 870 GTAAGGTTCCCTTGCATTCAGATTATTAAGACAGCAACAGTCCCAGCC-TCTCTCTGCAA 928
Query 838 GAGAGAGAGCACTAAGCAGTTTCATAACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAA 897
||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 929 GAGGGAAAGCACGAAGCAGTTTCACAACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAA 988
Query 898 GGTTAGACCTCCCACCAGAAAGCTCAAGACTACCTTCAAGGCCTCCAAGCCTAACTTGTT 957
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 989 GGTTAGACCTCCCACCAGAAAGCTCAAGACTACCTTCAAGGCCAACAAGCCTAACTTGTT 1048
Query 958 TATGTAGAA 966
|||||||||
Sbjct 1049 TATGTAGAA 1057
> AT1G29965.1 | Symbols: | Ribosomal protein L18ae/LX family protein
| chr1:10498310-10499462 REVERSE LENGTH=774
Length=774
Score = 808 bits (437), Expect = 0.0
Identities = 494/522 (95%), Gaps = 2/522 (0%)
Strand=Plus/Plus
Query 446 CACCAGTACCAAGTCGTAGGAAGAGCTCTCCCGACGGAGAAAGATGAGCAGCCGAAGATC 505
||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 108 CACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAAGATGAGCAACCAAAGATT 167
Query 506 TACAGGATGAAGCTTTGGGCTACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACTTC 565
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 168 TACAGGATGAAGCTATGGGCAACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACTAC 227
Query 566 TTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGTTAGCTATCAACGAGATC 625
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 228 TTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAGATC 287
Query 626 TTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGTCGT 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 288 TTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGCCGT 347
Query 686 ACTGGTTACCATAACATGTACAAGGAGTTTCGTGACACAACTTTGAACGGAGCAGTGGAG 745
|| |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||
Sbjct 348 ACAGGTTACCATAACATGTACAAAGAGTACCGTGACACTACTTTGAATGGAGCAGTGGAG 407
Query 746 CAAATGTACACTGAGATGGCGTCAAGACACAGAGTCAGGTTCCCTTGCATTCAGATTATC 805
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 408 CAAATGTACACTGAGATGGCGTCAAGACACAGAGTAAGGTTCCCTTGCATTCAGATTATT 467
Query 806 AAGACAGCTACAGTCCCAGCCAAC-CTCTGCAAGAGAGAGAGCACTAAGCAGTTTCATAA 864
|||||||| |||||||||||| | ||||||||||| || ||||| ||||||||||| ||
Sbjct 468 AAGACAGCAACAGTCCCAGCC-TCTCTCTGCAAGAGGGAAAGCACGAAGCAGTTTCACAA 526
Query 865 CAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTCAA 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTCAA 586
Query 925 GACTACCTTCAAGGCCTCCAAGCCTAACTTGTTTATGTAGAA 966
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 587 GACTACCTTCAAGGCCAACAAGCCTAACTTGTTTATGTAGAA 628
> AT2G34480.1 | Symbols: | Ribosomal protein L18ae/LX family protein
| chr2:14532708-14534239 REVERSE LENGTH=823
Length=823
Score = 584 bits (316), Expect = 5e-166
Identities = 454/522 (87%), Gaps = 4/522 (1%)
Strand=Plus/Plus
Query 444 TTCACCAGTACCAAGTCGTAGGAAGAGCTCTCCCGACGGAGAAAGATGAGCAGCCGAAGA 503
||||||||||||| || || ||||||||||||||||| ||||| |||| |||||| ||||
Sbjct 95 TTCACCAGTACCAGGTTGTGGGAAGAGCTCTCCCGACAGAGAAGGATGTGCAGCCTAAGA 154
Query 504 TCTACAGGATGAAGCTTTGGGCTACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACT 563
| |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |
Sbjct 155 TTTACAGGATGAAGCTCTGGGCTACGAACGAGGTTCGTGCCAAGTCCAAGTTCTGGTATT 214
Query 564 TCTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGTTAGCTATCAACGAGA 623
|||| |||| || |||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 215 TCTTGAGGAAGCTCAAGAAGGTGAAGAAGAGTAATGGACAGATGCTCGCCATCAACGAGA 274
Query 624 TCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGTC 683
||| ||||||||||||||||||||||||||| || || || |||||||| |||||||||
Sbjct 275 TCTATGAGAAGAACCCAACAACGATCAAGAACTTCGGTATTTGGTTGAGGTACCAGAGTA 334
Query 684 GTACTGGTTACCATAACATGTACAAGGAGTTTCGTGACACAACT-TTGAACGGAGCAGTG 742
| ||||| ||||| |||||||||||||||| |||||||| ||| || |||||||| ||
Sbjct 335 GAACTGGGTACCACAACATGTACAAGGAGTACCGTGACACCACTCTT-AACGGAGCTGTT 393
Query 743 GAGCAAATGTACACTGAGATGGCGTCAAGACACAGAGTCAGGTTCCCTTGCATTCAGATT 802
||||| ||||||||||||||||| || | ||| | ||||| |||||||||||||||||
Sbjct 394 GAGCAGATGTACACTGAGATGGCATCCCGTCACCGTGTCAGATTCCCTTGCATTCAGATC 453
Query 803 ATCAAGACAGCTACAGTCCCAGCCAACCTCTGCAAGAGAGAGAGCACTAAGCAGTTTCAT 862
||||||||||| || ||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 454 ATCAAGACAGCCACTGTCCCAGCCAAGCTGTGCAAGAGAGAGAGCACTAAACAGTTCCAC 513
Query 863 AACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTC 922
|||||||||||||||||||| ||||| ||| | ||||||||||| || | ||| |||||
Sbjct 514 AACAGCAAGATCAAGTTCCCATTGGTGTTCCGCAAGGTTAGACCACCAAGCAGGAAGCTG 573
Query 923 AAGACTACCTT-CAAGGCCTCCAAGCCTAACTTGTTTATGTA 963
||||| || || ||||||| |||||| |||||||| |||||
Sbjct 574 AAGACGAC-TTACAAGGCCAACAAGCCCAACTTGTTCATGTA 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5