BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473214 Length=966 Score E Sequences producing significant alignments: (Bits) Value AT1G29970.2 | Symbols: RPL18AA | 60S ribosomal protein L18A-1 |... 1402 0.0 AT1G29965.1 | Symbols: | Ribosomal protein L18ae/LX family pro... 808 0.0 AT2G34480.1 | Symbols: | Ribosomal protein L18ae/LX family pro... 584 5e-166 > AT1G29970.2 | Symbols: RPL18AA | 60S ribosomal protein L18A-1 | chr1:10498351-10501427 REVERSE LENGTH=1162 Length=1162 Score = 1402 bits (759), Expect = 0.0 Identities = 901/969 (93%), Gaps = 12/969 (1%) Strand=Plus/Plus Query 1 GGTTAATCGGATCTCAATTATGGACGAGGAGGCAGCAAAACCTAGAGAATCCACCGTGAA 60 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 98 GGTTAATCGGATCTCAATTATGGACGAAGAGGCAGCAAAACCTAGAGACTCCACCGTGAA 157 Query 61 TCAGCAACAACAACAATACTTA-TACGGAACGTTTCAAGGCGTTGCAAATTTTCCTCCTC 119 |||| ||||| |||||| || ||||||||||||||||||||||| ||||||||| ||| Sbjct 158 TCAG---CAACATCAATAC-TATTACGGAACGTTTCAAGGCGTTGCGAATTTTCCTACTC 213 Query 120 CGGCTCCGCCACCTCAATTTCTGCAACCGCATCATCCGATTGCTACGTTTCCTGGACATG 179 | |||| ||||| |||||| ||||||| || ||||||||| |||||||||||||||||| Sbjct 214 CTACTCCACCACCGCAATTTATGCAACCACAGCATCCGATTACTACGTTTCCTGGACATG 273 Query 180 CTTATCAGAATCTCCAAGGTTTTTATGGTGGTTTTGTGAATTATGCTCAAGGTTTCCCAG 239 |||| || ||||||||||| | |||||||| |||||||||||||||||| ||||||| Sbjct 274 CTTACCAAAATCTCCAAGG---TCATGGTGGTGGTGTGAATTATGCTCAAGGATTCCCAG 330 Query 240 TTGTTGTT-TTAGATTATACAGTGGTTGAGGTGAGACCTATGATCGAGCATGAACTTCCT 298 |||||||| | |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 331 TTGTTGTTCCT-GATTATACAGTGGTTGAGGTGAGACCAATGATAGAGCATGAACTTCCT 389 Query 299 TGCTGTGGCTTGGGCATGGGCTGGTTTCTGTTTATTATGGGTTTCTTGTTCGGTGGGATC 358 || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 390 TGTTGTGGCTTGGGCATGGGCTGGTTTCTGTTTATCATGGGCTTCTTGTTCGGTGGGATC 449 Query 359 CCTTGGTACCTTGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCATCGCGAGAAAGCT 418 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 450 CCTTGGTACCTCGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCACCGCGAGAAAGCT 509 Query 419 GGTTACATTGCCTGTTCAATCGCTCTTCACCAGTACCAAGTCGTAGGAAGAGCTCTCCCG 478 |||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||||| Sbjct 510 GGTTACGTTGCCTGTTCAATCGCACTGCACCAGTACCAAGTCGTAGGACGAGCTCTCCCG 569 Query 479 ACGGAGAAAGATGAGCAGCCGAAGATCTACAGGATGAAGCTTTGGGCTACGAACGAGGTT 538 ||||||||||||||||| || ||||| |||||||||||||| ||||| |||||||||||| Sbjct 570 ACGGAGAAAGATGAGCAACCAAAGATTTACAGGATGAAGCTATGGGCAACGAACGAGGTT 629 Query 539 CTTGCCAAATCCAAGTTCTGGTACTTCTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAAT 598 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 630 CTTGCCAAATCCAAGTTCTGGTACTACTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAAT 689 Query 599 GGACAGATGTTAGCTATCAACGAGATCTTTGAGAAGAACCCAACAACGATCAAGAATTTT 658 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 690 GGACAGATGCTAGCCATCAACGAGATCTTTGAGAAGAACCCAACAACGATCAAGAATTTT 749 Query 659 GGAATCTGGTTGAGATACCAGAGTCGTACTGGTTACCATAACATGTACAAGGAGTTTCGT 718 ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||| Sbjct 750 GGAATCTGGTTGAGATACCAGAGCCGTACAGGTTACCATAACATGTACAAAGAGTACCGT 809 Query 719 GACACAACTTTGAACGGAGCAGTGGAGCAAATGTACACTGAGATGGCGTCAAGACACAGA 778 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810 GACACTACTTTGAATGGAGCAGTGGAGCAAATGTACACTGAGATGGCGTCAAGACACAGA 869 Query 779 GTCAGGTTCCCTTGCATTCAGATTATCAAGACAGCTACAGTCCCAGCCAAC-CTCTGCAA 837 || ||||||||||||||||||||||| |||||||| |||||||||||| | |||||||| Sbjct 870 GTAAGGTTCCCTTGCATTCAGATTATTAAGACAGCAACAGTCCCAGCC-TCTCTCTGCAA 928 Query 838 GAGAGAGAGCACTAAGCAGTTTCATAACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAA 897 ||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 929 GAGGGAAAGCACGAAGCAGTTTCACAACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAA 988 Query 898 GGTTAGACCTCCCACCAGAAAGCTCAAGACTACCTTCAAGGCCTCCAAGCCTAACTTGTT 957 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 989 GGTTAGACCTCCCACCAGAAAGCTCAAGACTACCTTCAAGGCCAACAAGCCTAACTTGTT 1048 Query 958 TATGTAGAA 966 ||||||||| Sbjct 1049 TATGTAGAA 1057 > AT1G29965.1 | Symbols: | Ribosomal protein L18ae/LX family protein | chr1:10498310-10499462 REVERSE LENGTH=774 Length=774 Score = 808 bits (437), Expect = 0.0 Identities = 494/522 (95%), Gaps = 2/522 (0%) Strand=Plus/Plus Query 446 CACCAGTACCAAGTCGTAGGAAGAGCTCTCCCGACGGAGAAAGATGAGCAGCCGAAGATC 505 ||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| Sbjct 108 CACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAAGATGAGCAACCAAAGATT 167 Query 506 TACAGGATGAAGCTTTGGGCTACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACTTC 565 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 168 TACAGGATGAAGCTATGGGCAACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACTAC 227 Query 566 TTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGTTAGCTATCAACGAGATC 625 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 228 TTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAGATC 287 Query 626 TTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGTCGT 685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 288 TTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGCCGT 347 Query 686 ACTGGTTACCATAACATGTACAAGGAGTTTCGTGACACAACTTTGAACGGAGCAGTGGAG 745 || |||||||||||||||||||| |||| |||||||| |||||||| |||||||||||| Sbjct 348 ACAGGTTACCATAACATGTACAAAGAGTACCGTGACACTACTTTGAATGGAGCAGTGGAG 407 Query 746 CAAATGTACACTGAGATGGCGTCAAGACACAGAGTCAGGTTCCCTTGCATTCAGATTATC 805 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 408 CAAATGTACACTGAGATGGCGTCAAGACACAGAGTAAGGTTCCCTTGCATTCAGATTATT 467 Query 806 AAGACAGCTACAGTCCCAGCCAAC-CTCTGCAAGAGAGAGAGCACTAAGCAGTTTCATAA 864 |||||||| |||||||||||| | ||||||||||| || ||||| ||||||||||| || Sbjct 468 AAGACAGCAACAGTCCCAGCC-TCTCTCTGCAAGAGGGAAAGCACGAAGCAGTTTCACAA 526 Query 865 CAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTCAA 924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 527 CAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTCAA 586 Query 925 GACTACCTTCAAGGCCTCCAAGCCTAACTTGTTTATGTAGAA 966 |||||||||||||||| |||||||||||||||||||||||| Sbjct 587 GACTACCTTCAAGGCCAACAAGCCTAACTTGTTTATGTAGAA 628 > AT2G34480.1 | Symbols: | Ribosomal protein L18ae/LX family protein | chr2:14532708-14534239 REVERSE LENGTH=823 Length=823 Score = 584 bits (316), Expect = 5e-166 Identities = 454/522 (87%), Gaps = 4/522 (1%) Strand=Plus/Plus Query 444 TTCACCAGTACCAAGTCGTAGGAAGAGCTCTCCCGACGGAGAAAGATGAGCAGCCGAAGA 503 ||||||||||||| || || ||||||||||||||||| ||||| |||| |||||| |||| Sbjct 95 TTCACCAGTACCAGGTTGTGGGAAGAGCTCTCCCGACAGAGAAGGATGTGCAGCCTAAGA 154 Query 504 TCTACAGGATGAAGCTTTGGGCTACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACT 563 | |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| | Sbjct 155 TTTACAGGATGAAGCTCTGGGCTACGAACGAGGTTCGTGCCAAGTCCAAGTTCTGGTATT 214 Query 564 TCTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGTTAGCTATCAACGAGA 623 |||| |||| || |||||||||||||||||||||||||||||| | || |||||||||| Sbjct 215 TCTTGAGGAAGCTCAAGAAGGTGAAGAAGAGTAATGGACAGATGCTCGCCATCAACGAGA 274 Query 624 TCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGTC 683 ||| ||||||||||||||||||||||||||| || || || |||||||| ||||||||| Sbjct 275 TCTATGAGAAGAACCCAACAACGATCAAGAACTTCGGTATTTGGTTGAGGTACCAGAGTA 334 Query 684 GTACTGGTTACCATAACATGTACAAGGAGTTTCGTGACACAACT-TTGAACGGAGCAGTG 742 | ||||| ||||| |||||||||||||||| |||||||| ||| || |||||||| || Sbjct 335 GAACTGGGTACCACAACATGTACAAGGAGTACCGTGACACCACTCTT-AACGGAGCTGTT 393 Query 743 GAGCAAATGTACACTGAGATGGCGTCAAGACACAGAGTCAGGTTCCCTTGCATTCAGATT 802 ||||| ||||||||||||||||| || | ||| | ||||| ||||||||||||||||| Sbjct 394 GAGCAGATGTACACTGAGATGGCATCCCGTCACCGTGTCAGATTCCCTTGCATTCAGATC 453 Query 803 ATCAAGACAGCTACAGTCCCAGCCAACCTCTGCAAGAGAGAGAGCACTAAGCAGTTTCAT 862 ||||||||||| || ||||||||||| || |||||||||||||||||||| ||||| || Sbjct 454 ATCAAGACAGCCACTGTCCCAGCCAAGCTGTGCAAGAGAGAGAGCACTAAACAGTTCCAC 513 Query 863 AACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTC 922 |||||||||||||||||||| ||||| ||| | ||||||||||| || | ||| ||||| Sbjct 514 AACAGCAAGATCAAGTTCCCATTGGTGTTCCGCAAGGTTAGACCACCAAGCAGGAAGCTG 573 Query 923 AAGACTACCTT-CAAGGCCTCCAAGCCTAACTTGTTTATGTA 963 ||||| || || ||||||| |||||| |||||||| ||||| Sbjct 574 AAGACGAC-TTACAAGGCCAACAAGCCCAACTTGTTCATGTA 614 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47270332327 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5