BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473221 Length=471 Score E Sequences producing significant alignments: (Bits) Value AT1G30020.1 | Symbols: | Protein of unknown function, DUF538 |... 680 0.0 AT1G30010.1 | Symbols: | Intron maturase, type II family prote... 649 0.0 > AT1G30020.1 | Symbols: | Protein of unknown function, DUF538 | chr1:10515874-10516347 REVERSE LENGTH=474 Length=474 Score = 680 bits (368), Expect = 0.0 Identities = 393/405 (97%), Gaps = 1/405 (0%) Strand=Plus/Plus Query 1 ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA 60 Query 61 TCTCTTTGTCTAGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAGCTACCCACGGGATTG 120 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 TCTCTTTGTCTTGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAACTACCCACGGGATTG 120 Query 121 TTGCCATTGAAGGATATGACAGAAGTTGGGTACAACAAAACGAAAGGGTTTGTGTGGATG 180 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 121 TTGCCATTGAAGGATATGACGGAAGTTGGGTACAACAAAACAAAAGGGTTTGTGTGGATG 180 Query 181 AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAAATAGGTCGCAGAGTGTTATATGAC 240 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 181 AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAGATAGGTCGCAGAGTTTTATATGAC 240 Query 241 ACGGAGATAACTGCGTTTGTTGAGGACCGTCGTATGAGGAGACTTACCGGAGTCAAAAGC 300 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 ACGGAGATAACTGCGTTTGTTGAGGACCGCCGTATGAGGAGACTTACCGGAGTCAAAAGC 300 Query 301 AAGGAGCTCATGATCTGGGTTCCTGTGAACGATATCTTTATCAAAGAGAAAGATCCGGAG 360 || |||||||||||||||||||||||||| |||||||| || |||||||||||||| ||| Sbjct 301 AAAGAGCTCATGATCTGGGTTCCTGTGAATGATATCTTCAT-AAAGAGAAAGATCCTGAG 359 Query 361 AAGATCACCTTTGCTAATACCACCGGCCTGTCACGAACATTTAAA 405 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAGATCACCTTTGCTAATACCACCGGCCTGTCACGAACATTTAAA 404 > AT1G30010.1 | Symbols: | Intron maturase, type II family protein | chr1:10513194-10516385 FORWARD LENGTH=2729 Length=2729 Score = 649 bits (351), Expect = 0.0 Identities = 376/388 (97%), Gaps = 1/388 (0%) Strand=Plus/Minus Query 1 ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2691 ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA 2632 Query 61 TCTCTTTGTCTAGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAGCTACCCACGGGATTG 120 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2631 TCTCTTTGTCTTGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAACTACCCACGGGATTG 2572 Query 121 TTGCCATTGAAGGATATGACAGAAGTTGGGTACAACAAAACGAAAGGGTTTGTGTGGATG 180 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 2571 TTGCCATTGAAGGATATGACGGAAGTTGGGTACAACAAAACAAAAGGGTTTGTGTGGATG 2512 Query 181 AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAAATAGGTCGCAGAGTGTTATATGAC 240 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 2511 AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAGATAGGTCGCAGAGTTTTATATGAC 2452 Query 241 ACGGAGATAACTGCGTTTGTTGAGGACCGTCGTATGAGGAGACTTACCGGAGTCAAAAGC 300 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2451 ACGGAGATAACTGCGTTTGTTGAGGACCGCCGTATGAGGAGACTTACCGGAGTCAAAAGC 2392 Query 301 AAGGAGCTCATGATCTGGGTTCCTGTGAACGATATCTTTATCAAAGAGAAAGATCCGGAG 360 || |||||||||||||||||||||||||| |||||||| || |||||||||||||| ||| Sbjct 2391 AAAGAGCTCATGATCTGGGTTCCTGTGAATGATATCTTCAT-AAAGAGAAAGATCCTGAG 2333 Query 361 AAGATCACCTTTGCTAATACCACCGGCC 388 |||||||||||||||||||||||||||| Sbjct 2332 AAGATCACCTTTGCTAATACCACCGGCC 2305 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22404429562 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5