BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473221
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30020.1 | Symbols: | Protein of unknown function, DUF538 |... 680 0.0
AT1G30010.1 | Symbols: | Intron maturase, type II family prote... 649 0.0
> AT1G30020.1 | Symbols: | Protein of unknown function, DUF538
| chr1:10515874-10516347 REVERSE LENGTH=474
Length=474
Score = 680 bits (368), Expect = 0.0
Identities = 393/405 (97%), Gaps = 1/405 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA 60
Query 61 TCTCTTTGTCTAGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAGCTACCCACGGGATTG 120
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TCTCTTTGTCTTGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAACTACCCACGGGATTG 120
Query 121 TTGCCATTGAAGGATATGACAGAAGTTGGGTACAACAAAACGAAAGGGTTTGTGTGGATG 180
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TTGCCATTGAAGGATATGACGGAAGTTGGGTACAACAAAACAAAAGGGTTTGTGTGGATG 180
Query 181 AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAAATAGGTCGCAGAGTGTTATATGAC 240
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 181 AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAGATAGGTCGCAGAGTTTTATATGAC 240
Query 241 ACGGAGATAACTGCGTTTGTTGAGGACCGTCGTATGAGGAGACTTACCGGAGTCAAAAGC 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 ACGGAGATAACTGCGTTTGTTGAGGACCGCCGTATGAGGAGACTTACCGGAGTCAAAAGC 300
Query 301 AAGGAGCTCATGATCTGGGTTCCTGTGAACGATATCTTTATCAAAGAGAAAGATCCGGAG 360
|| |||||||||||||||||||||||||| |||||||| || |||||||||||||| |||
Sbjct 301 AAAGAGCTCATGATCTGGGTTCCTGTGAATGATATCTTCAT-AAAGAGAAAGATCCTGAG 359
Query 361 AAGATCACCTTTGCTAATACCACCGGCCTGTCACGAACATTTAAA 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGATCACCTTTGCTAATACCACCGGCCTGTCACGAACATTTAAA 404
> AT1G30010.1 | Symbols: | Intron maturase, type II family protein
| chr1:10513194-10516385 FORWARD LENGTH=2729
Length=2729
Score = 649 bits (351), Expect = 0.0
Identities = 376/388 (97%), Gaps = 1/388 (0%)
Strand=Plus/Minus
Query 1 ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2691 ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA 2632
Query 61 TCTCTTTGTCTAGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAGCTACCCACGGGATTG 120
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2631 TCTCTTTGTCTTGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAACTACCCACGGGATTG 2572
Query 121 TTGCCATTGAAGGATATGACAGAAGTTGGGTACAACAAAACGAAAGGGTTTGTGTGGATG 180
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 2571 TTGCCATTGAAGGATATGACGGAAGTTGGGTACAACAAAACAAAAGGGTTTGTGTGGATG 2512
Query 181 AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAAATAGGTCGCAGAGTGTTATATGAC 240
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2511 AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAGATAGGTCGCAGAGTTTTATATGAC 2452
Query 241 ACGGAGATAACTGCGTTTGTTGAGGACCGTCGTATGAGGAGACTTACCGGAGTCAAAAGC 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2451 ACGGAGATAACTGCGTTTGTTGAGGACCGCCGTATGAGGAGACTTACCGGAGTCAAAAGC 2392
Query 301 AAGGAGCTCATGATCTGGGTTCCTGTGAACGATATCTTTATCAAAGAGAAAGATCCGGAG 360
|| |||||||||||||||||||||||||| |||||||| || |||||||||||||| |||
Sbjct 2391 AAAGAGCTCATGATCTGGGTTCCTGTGAATGATATCTTCAT-AAAGAGAAAGATCCTGAG 2333
Query 361 AAGATCACCTTTGCTAATACCACCGGCC 388
||||||||||||||||||||||||||||
Sbjct 2332 AAGATCACCTTTGCTAATACCACCGGCC 2305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22404429562
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5