BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473223
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30040.1 | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase... 2093 0.0
> AT1G30040.1 | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase
| chr1:10537648-10539831 FORWARD LENGTH=1408
Length=1408
Score = 2093 bits (1133), Expect = 0.0
Identities = 1203/1237 (97%), Gaps = 4/1237 (0%)
Strand=Plus/Plus
Query 50 TACAAAAACCGAACATGGTAGTTTTGCCACAGCCAGTCACTTTAGAAAACCACATCTCCC 109
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 108 TACAAAAACCAAACATGGTGGTTTTGCCACAGCCAGTCACTTTAGATAACCACATCTCCC 167
Query 110 TAATCCCAACATATAAACCGGTTCCGGTTCTCACTTCCCATTCAATCCCCGTCGTGAACC 169
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 168 TAATCCCCACATACAAACCGGTTCCGGTTCTCACTTCCCATTCAATCCCCGTCGTCAACC 227
Query 170 TAACCGATCCGGAAGCGAAAACCCGAATCGTAAAAGCCTGTGAGGAGTTCGGGTTCTTCA 229
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 228 TAGCCGATCCGGAAGCGAAAACCCGAATCGTAAAAGCCTGCGAGGAGTTCGGGTTCTTCA 287
Query 230 AGGTCGTAAACCACGGAGTCCGACCCGAACTCATGACTCGGTTAGAGCAGGAGGCTATTG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AGGTCGTAAACCACGGAGTCCGACCCGAACTCATGACTCGGTTAGAGCAGGAGGCTATTG 347
Query 290 GCTTCTTCGCCTTGCCTCAGTCTCTTAAAAACCGGGCCGGTCCGCCTGAACCGTACGGTT 349
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 348 GCTTCTTCGGCTTGCCTCAGTCTCTTAAAAACCGGGCCGGTCCACCTGAACCGTACGGTT 407
Query 350 ATGGTAATAAACGGATTGGACCAAACGGTGACGTTGGTTGGATTGAGTATATCCTCCTCA 409
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 408 ATGGTAATAAACGGATTGGACCAAACGGTGACGTTGGTTGGATTGAGTATCTCCTCCTCA 467
Query 410 ATGCTAACCCTCAGCTCTCCTCTCCTAAAACCTCCGCCGTTTTCCGTCAAACCCCTCAAA 469
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 ATGCTAATCCTCAGCTCTCCTCTCCTAAAACCTCCGCCGTTTTCCGTCAAACCCCTCAAA 527
Query 470 TTTTCCGTGAGTCGGTGGAGGAGTACATGAAGGAGATTAAGGAAGTGTCGTACAAGGTGT 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TTTTCCGTGAGTCGGTGGAGGAGTACATGAAGGAGATTAAGGAAGTGTCGTACAAGGTGT 587
Query 530 TGGAGATGGTGGCTGAAGAACTAGGGATAGAGCCAAGAGACACTCTGAGTAAAATGCTGA 589
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 588 TGGAGATGGTTGCCGAAGAACTAGGGATAGAGCCAAGGGACACTCTGAGTAAAATGCTGA 647
Query 590 GAGATGAGAAGAGTGACTCGTGCCTGAGACTAAACCATTATCCGGCGGCGGAGGAAGAGG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GAGATGAGAAGAGTGACTCGTGCCTGAGACTAAACCATTATCCGGCGGCGGAGGAAGAGG 707
Query 650 CGGAGAAGACGGTGAAGGTGGGGTTTGGGGAACACACAGACCCACAAATAATCTCAGTGC 709
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 708 CGGAGAAGATGGTGAAGGTGGGGTTTGGGGAACACACAGACCCACAGATAATCTCAGTGC 767
Query 710 TAAGATCTAATAACACGGCGGGTCTTCAAATCTGTGTGAAAGATGGAAGTTGGGTCGCTG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TAAGATCTAATAACACGGCGGGTCTTCAAATCTGTGTGAAAGATGGAAGTTGGGTCGCTG 827
Query 770 TCCCTCCTGATCACTCTTCTTTCTTCATTAATGTTGGAGATGCTCTTCAGGTTATGACTA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TCCCTCCTGATCACTCTTCTTTCTTCATTAATGTTGGAGATGCTCTTCAGGTTATGACTA 887
Query 830 ACGGGAGGTTCAAGAGTGTTAAACACAGGGTCTTAGCCGATACAAGGAGATCGAGGATTT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 ACGGGAGGTTCAAGAGTGTTAAACACAGGGTCTTAGCCGATACAAGGAGATCGAGGATTT 947
Query 890 CAATGATATATTTCGGGGGACCGCCATTGAGCGAGAAGATCGCACCATTGCCATGCCTTG 949
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 948 CAATGATATATTTCGGCGGACCGCCATTGAGCCAGAAGATCGCACCATTGCCATGCCTTG 1007
Query 950 TCCCTGAGCAAGATGATTGGCTTTACAAAGAATTCACTTGGTCTCAATACAAATCTTCTG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TCCCTGAGCAAGATGATTGGCTTTACAAAGAATTCACTTGGTCTCAATACAAATCTTCTG 1067
Query 1010 CTTACAAGTCTAAGCTTGGTGATTATAGACTTGGTGTCTTTGAGAAACAACCTCTTCTCA 1069
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1068 CTTACAAGTCTAAGCTTGGTGATTATAGACTTGGTCTCTTTGAGAAACAACCTCTTCTCA 1127
Query 1070 CTCATAAAACCATTGTATGAGAGAAGTCATGATGATCCCTATCATCCTTTGTATGATA-A 1128
|||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||| |
Sbjct 1128 ATCATAAAACCCTTGTATGAGAGTAGTCATGATGATCTTTATCATCCTTTGTACGATAGA 1187
Query 1129 AAGTCATAATCACAAAAAAGAAGGAAATGGATAGTGttttggattag-ttttt-attttt 1186
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||
Sbjct 1188 AAGTCATAATCACAAAAA-GAAGGAAATGGATAGTGTTTTGGATTAGCTTTTTTATGTTT 1246
Query 1187 ggtatgtttttCATTAGGTACAAAAGCATTAGGCTTTGCTTAGAGTTTGACCCAACCAAA 1246
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1247 GGTATGTTTTTCATTAGGTACAAAAGCTTTAGGCTTTGCTTAGAGTTTGACCCAACCAAA 1306
Query 1247 CCTACCTTTTGTATCTTCTCGTCTTCTTCTTCCTTTT 1283
|||| ||||||||||||||||||||||||||| ||||
Sbjct 1307 CCTAACTTTTGTATCTTCTCGTCTTCTTCTTCTTTTT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63102085065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5