BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473224 Length=1306 Score E Sequences producing significant alignments: (Bits) Value AT1G30050.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2015 0.0 > AT1G30050.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 246 Blast hits to 244 proteins in 61 species: Archae - 0; Bacteria - 8; Metazoa - 78; Fungi - 10; Plants - 117; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | chr1:10543022-10544591 FORWARD LENGTH=1498 Length=1498 Score = 2015 bits (1091), Expect = 0.0 Identities = 1237/1305 (95%), Gaps = 20/1305 (2%) Strand=Plus/Plus Query 18 TTATTAAAGAACGTGAATTACGTAAAACCAGAGGATCATAGATTGtaaaaattgtgataa 77 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 39 TTATTAAAGAACGTGAATTACGTAAAACCAGAGGATCATAGATTGTAGAATTTGTGATAA 98 Query 78 acaaatttcttaatatcaacaaaaac--aa-ccaaaaatataagaagaaaaagaacaaaa 134 |||||||||||||||||||||||||| || || | | | ||||| |||||||||||| Sbjct 99 ACAAATTTCTTAATATCAACAAAAACAAAAGCC--AGAGA-AAGAATCAAAAGAACAAAA 155 Query 135 atGGCGTATCGGAGAAGACAAGGGATCACGAGAGCTTCAACATTCAAGGAAGACATCTAT 194 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 156 ATGGCGTATCGGAGAAGACAAGGGATCACAAGAGCTTCAACATTCAAAGAAGACATCTAT 215 Query 195 CATCAACCACCAGATCACGATCACGGTGATCTCAAAGGTCACTCCAATGGCGGATCCTTC 254 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 216 CATCAACCACCAGATCCCGATCACGGTGATCTCAAAGGTCACTCCAATGGCGGATCCTTC 275 Query 255 AGATCTTCTCAATCTTTCTCTTCTCATTCCTCCCTTGCCGCTCAAGCAATCCGCGCCTCC 314 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 276 AGATCTTCTCAATCTTTCTCTTCTCATTCCTCCCTTGCCGCTCAAGCAATCCGTGCCTCC 335 Query 315 TCTCAGGCTCAAGGATTCACGGCTTACGAAGATAAGAGCGAGAGTCGTGGATTCTGGGGA 374 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 336 TCTCAGGCTCAAGGATTCACCGCTTACGAGGATAAGAGCGAGAGTCGTGGATTCTGGGGA 395 Query 375 ATCTTAGCTCAAAAAGCTAAATCAATCCTCGAAGACGAAG-A-AG----------AAGAA 422 ||||||||||| ||||||||||||||||| |||||||||| | || || || Sbjct 396 ATCTTAGCTCAGAAAGCTAAATCAATCCTTGAAGACGAAGAAGAGCAACAACAACAACAA 455 Query 423 CAACAACAAAACGACGTCGTTTTCGAACCCTCGAATCCAACCATACGCAAAAGCATAGAT 482 |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 456 CAACAACAAAACGACGTCATTTTCGAGCCCTCGAATCCAACCATACGCAAAAGCATAGAC 515 Query 483 AAGATCACAACGTCTCTGAATCATATCGGAGATAGTTTCGAGAAAGCGTTCGAGGAAGGT 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 516 AAGATCACAACGTCTCTGAATCATATCGGAGATAGTTTCGAGAAAGCGTTCGAGGAAGGT 575 Query 543 CGTACGATCGTAGCTTCACAAATCAGACGAAAAGGATCTGATCTAATCGATTCAGACAAC 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 576 CGTACGATCGTAGCTTCACAAATCAGACGAAAAGGATCTGATCTAATCGATTCAGACAAC 635 Query 603 AACAATTATAACCAATCCTCTGGATCAAGCAGTCCATGGCAACCATTAACACAACCAAAC 662 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 636 AACAATTATCACCAATCCTCTGGATCAAGCAGTCCATGGCAACCACTAACACAACCAAAC 695 Query 663 CCACATGAGTCTCAACTCAAAGCTTCACGTGATGTAGCCATGGCTACAGCAGCTAAAGCC 722 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 696 CCACGTGAGTCTCAACTCAAAGCGTCACGTGATGTAGCCATGGCTACAGCAGCTAAAGCC 755 Query 723 AAGCTTCTCCTCCGTGAATTGAAAACGGTTAAAGCCGATTTAGCTTTCGCTAAAGAACGA 782 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 756 AAGCTTCTCCTCCGTGAATTGAAAACGGTTAAAGCCGATTTAGCTTTCGCTAAAGAACGT 815 Query 783 TGCGCGCAATTGGAAGAAGAAAACAAACGGTTAAGAGATAACCGAGATAAAGGTAATAAC 842 || | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 816 TGTTCTCAATTGGAAGAAGAAAACAAACGGTTAAGAGATAACCGGGATAAAGGTAACAAC 875 Query 843 AATCCAGCTGATGATGACCTAATTAGGCTTCAGCTAGAGACATTA-TTGGCAGAGAAAGC 901 |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 876 AATCCAGCTGATGATGACCTAATTAGGCTTCAGCTAGAGACATTGCTTG-CAGAGAAAGC 934 Query 902 GAGATTAGCGCACGAAAACTCGATTTACGCTAGAGAAAACCGATTCTTGAGAGAAATCGT 961 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 935 GAGATTAGCACACGAAAACTCTATTTACGCTAGAGAAAACCGATTCTTGAGAGAAATCGT 994 Query 962 CGAATATCATCAGTTAACAATGCAAGATGTTGTTTATATAGATGAAGGTATTGAAGAAGT 1021 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 995 CGAATATCATCAGTTAACAATGCAAGATGTTGTTTATATCGATGAAGGTATTGAAGAAGT 1054 Query 1022 TGCTGAAGTTAATCCTTCAATCACTAGAACGCTTTCTATGGCTTCGTATTCGGCTTCTGA 1081 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1055 TGCTGAAGTGAATCCTTCTATCACTAGAACGCTTTCTATGGCTTCGTATTCGGCTTCTGA 1114 Query 1082 ATTGCCTTCAATCTCGCCTTCGCCTTCTTCCCCTGCTTCGCCTTCTCGGCTTTCGGTTTC 1141 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1115 ATTGCCTTCGATCTCGCCTTCGCCTTCTTCCCCTGCTTCGCCTTCTCGGCTTTCGGTTTC 1174 Query 1142 TACCGACATTTATCCGGTTTTGGTTCAGCAGAGTTCGGCTAGTGATGTTGCGGTTGAGAG 1201 ||| |||||||||||| |||||||||||||||||||| ||| ||| || |||||||||| Sbjct 1175 TACAGACATTTATCCGATTTTGGTTCAGCAGAGTTCGACTAACGATATTACGGTTGAGAG 1234 Query 1202 TCCTAAACCGGTACGACCAATTTCTTTGGGATACACAGATGATGGTAAGAGACCATCGTC 1261 |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || Sbjct 1235 TCCTAAACCGGTTCGACCACCTTCTTTGGGATACACAGATGATGGTAAGAGACCATCATC 1294 Query 1262 ACAGCTACCATCGTCGCAGCTCTCTGTTTAGAATTGATGACATTT 1306 ||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1295 ACAGCTACCATCGTCACAGCTCTCTGTTTAGAATTGATGACTTTT 1339 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64256697600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5