BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473224
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30050.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2015 0.0
> AT1G30050.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G01970.1);
Has 246 Blast hits to 244 proteins in 61 species: Archae -
0; Bacteria - 8; Metazoa - 78; Fungi - 10; Plants - 117; Viruses
- 0; Other Eukaryotes - 33 (source: NCBI BLink). | chr1:10543022-10544591
FORWARD LENGTH=1498
Length=1498
Score = 2015 bits (1091), Expect = 0.0
Identities = 1237/1305 (95%), Gaps = 20/1305 (2%)
Strand=Plus/Plus
Query 18 TTATTAAAGAACGTGAATTACGTAAAACCAGAGGATCATAGATTGtaaaaattgtgataa 77
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 39 TTATTAAAGAACGTGAATTACGTAAAACCAGAGGATCATAGATTGTAGAATTTGTGATAA 98
Query 78 acaaatttcttaatatcaacaaaaac--aa-ccaaaaatataagaagaaaaagaacaaaa 134
|||||||||||||||||||||||||| || || | | | ||||| ||||||||||||
Sbjct 99 ACAAATTTCTTAATATCAACAAAAACAAAAGCC--AGAGA-AAGAATCAAAAGAACAAAA 155
Query 135 atGGCGTATCGGAGAAGACAAGGGATCACGAGAGCTTCAACATTCAAGGAAGACATCTAT 194
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 156 ATGGCGTATCGGAGAAGACAAGGGATCACAAGAGCTTCAACATTCAAAGAAGACATCTAT 215
Query 195 CATCAACCACCAGATCACGATCACGGTGATCTCAAAGGTCACTCCAATGGCGGATCCTTC 254
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 CATCAACCACCAGATCCCGATCACGGTGATCTCAAAGGTCACTCCAATGGCGGATCCTTC 275
Query 255 AGATCTTCTCAATCTTTCTCTTCTCATTCCTCCCTTGCCGCTCAAGCAATCCGCGCCTCC 314
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 276 AGATCTTCTCAATCTTTCTCTTCTCATTCCTCCCTTGCCGCTCAAGCAATCCGTGCCTCC 335
Query 315 TCTCAGGCTCAAGGATTCACGGCTTACGAAGATAAGAGCGAGAGTCGTGGATTCTGGGGA 374
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 336 TCTCAGGCTCAAGGATTCACCGCTTACGAGGATAAGAGCGAGAGTCGTGGATTCTGGGGA 395
Query 375 ATCTTAGCTCAAAAAGCTAAATCAATCCTCGAAGACGAAG-A-AG----------AAGAA 422
||||||||||| ||||||||||||||||| |||||||||| | || || ||
Sbjct 396 ATCTTAGCTCAGAAAGCTAAATCAATCCTTGAAGACGAAGAAGAGCAACAACAACAACAA 455
Query 423 CAACAACAAAACGACGTCGTTTTCGAACCCTCGAATCCAACCATACGCAAAAGCATAGAT 482
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 456 CAACAACAAAACGACGTCATTTTCGAGCCCTCGAATCCAACCATACGCAAAAGCATAGAC 515
Query 483 AAGATCACAACGTCTCTGAATCATATCGGAGATAGTTTCGAGAAAGCGTTCGAGGAAGGT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 AAGATCACAACGTCTCTGAATCATATCGGAGATAGTTTCGAGAAAGCGTTCGAGGAAGGT 575
Query 543 CGTACGATCGTAGCTTCACAAATCAGACGAAAAGGATCTGATCTAATCGATTCAGACAAC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 CGTACGATCGTAGCTTCACAAATCAGACGAAAAGGATCTGATCTAATCGATTCAGACAAC 635
Query 603 AACAATTATAACCAATCCTCTGGATCAAGCAGTCCATGGCAACCATTAACACAACCAAAC 662
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 636 AACAATTATCACCAATCCTCTGGATCAAGCAGTCCATGGCAACCACTAACACAACCAAAC 695
Query 663 CCACATGAGTCTCAACTCAAAGCTTCACGTGATGTAGCCATGGCTACAGCAGCTAAAGCC 722
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 696 CCACGTGAGTCTCAACTCAAAGCGTCACGTGATGTAGCCATGGCTACAGCAGCTAAAGCC 755
Query 723 AAGCTTCTCCTCCGTGAATTGAAAACGGTTAAAGCCGATTTAGCTTTCGCTAAAGAACGA 782
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 AAGCTTCTCCTCCGTGAATTGAAAACGGTTAAAGCCGATTTAGCTTTCGCTAAAGAACGT 815
Query 783 TGCGCGCAATTGGAAGAAGAAAACAAACGGTTAAGAGATAACCGAGATAAAGGTAATAAC 842
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 816 TGTTCTCAATTGGAAGAAGAAAACAAACGGTTAAGAGATAACCGGGATAAAGGTAACAAC 875
Query 843 AATCCAGCTGATGATGACCTAATTAGGCTTCAGCTAGAGACATTA-TTGGCAGAGAAAGC 901
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 876 AATCCAGCTGATGATGACCTAATTAGGCTTCAGCTAGAGACATTGCTTG-CAGAGAAAGC 934
Query 902 GAGATTAGCGCACGAAAACTCGATTTACGCTAGAGAAAACCGATTCTTGAGAGAAATCGT 961
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 935 GAGATTAGCACACGAAAACTCTATTTACGCTAGAGAAAACCGATTCTTGAGAGAAATCGT 994
Query 962 CGAATATCATCAGTTAACAATGCAAGATGTTGTTTATATAGATGAAGGTATTGAAGAAGT 1021
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 995 CGAATATCATCAGTTAACAATGCAAGATGTTGTTTATATCGATGAAGGTATTGAAGAAGT 1054
Query 1022 TGCTGAAGTTAATCCTTCAATCACTAGAACGCTTTCTATGGCTTCGTATTCGGCTTCTGA 1081
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TGCTGAAGTGAATCCTTCTATCACTAGAACGCTTTCTATGGCTTCGTATTCGGCTTCTGA 1114
Query 1082 ATTGCCTTCAATCTCGCCTTCGCCTTCTTCCCCTGCTTCGCCTTCTCGGCTTTCGGTTTC 1141
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 ATTGCCTTCGATCTCGCCTTCGCCTTCTTCCCCTGCTTCGCCTTCTCGGCTTTCGGTTTC 1174
Query 1142 TACCGACATTTATCCGGTTTTGGTTCAGCAGAGTTCGGCTAGTGATGTTGCGGTTGAGAG 1201
||| |||||||||||| |||||||||||||||||||| ||| ||| || ||||||||||
Sbjct 1175 TACAGACATTTATCCGATTTTGGTTCAGCAGAGTTCGACTAACGATATTACGGTTGAGAG 1234
Query 1202 TCCTAAACCGGTACGACCAATTTCTTTGGGATACACAGATGATGGTAAGAGACCATCGTC 1261
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1235 TCCTAAACCGGTTCGACCACCTTCTTTGGGATACACAGATGATGGTAAGAGACCATCATC 1294
Query 1262 ACAGCTACCATCGTCGCAGCTCTCTGTTTAGAATTGATGACATTT 1306
||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1295 ACAGCTACCATCGTCACAGCTCTCTGTTTAGAATTGATGACTTTT 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5