BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473227
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30090.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2302 0.0
> AT1G30090.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:10559561-10561423 REVERSE LENGTH=1610
Length=1610
Score = 2302 bits (1246), Expect = 0.0
Identities = 1436/1527 (94%), Gaps = 16/1527 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaTGAGGAAGAGCTGAAAGATTCGCGACGAAGCAAAACAACAGTGTTTATCTAT 60
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 17 AAAAAAAATGAGGAAGAGCTGAAAGATTCGCGACGAAGCAAAACGACAGTG-TTATCTAT 75
Query 61 CGCCGCCTTGTTGTTCTGTTAAACAAGAGTAGAGGAACCAAAGTTGGAAACTTTGATC-T 119
|||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| | |
Sbjct 76 CGCCGCCTTGTTGTTCTGTTTAACAAGTGTAGAGGAACCAAAGTTGAAAACTTTGAACTT 135
Query 120 CCC----A---T--TGTTAATTACTGATCACTCGAATCTGGAATAGAAGTAAAATGAATG 170
||| | | |||||||||||||||| ||||||||| ||| |||| | |||| ||
Sbjct 136 CCCATTGATTTTAATGTTAATTACTGATCATTCGAATCTGAAATTGAAG-CATATGAGTG 194
Query 171 CTTAATCTCTGAGTGTTAAAAGAAGAAGAAGAAGATGCAGAGGGTTAGGGTTTCATCTCA 230
|||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 195 CTTAATCTGTGAGTGTTAGAAGAAGTAGAAGAAGATGCAGAGGGTTAGGGTTTCATCTCA 254
Query 231 AAGAGCAGCTGTGCATAAGCTTGGTGATTCTCAGATGACTTTATCTCCCAAATTTAGAGT 290
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 255 AAGAGCAGTTGTGCATAAGCTTGGTGATTCTCAGATGACATTATCTCCCAAATTTAGAGT 314
Query 291 AGCTGCATCGATTCAATCGACATTGTTTGATAGATCATCGGAATTAGAACTGTCTCTTAT 350
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 315 AGCTGCATCGATACAATCGACATTGTTCGATAGATCATCGGAATTAGAACTGTCTCTTAG 374
Query 351 AGGAGAACCCTTGATTCCCGGTTTACCTGACGATGTTGCGCTTAACTGTCTTTTACGGGT 410
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 375 AGGAGAGCCCTTGATTCCCGGTTTACCAGACGATGTTGCGCTTAACTGTCTTTTACGGGT 434
Query 411 TCCAGTTCAAAGCCATGTATCGAGTAGATCCGTGTGCAAGAGATGGCATCTCTTGTTTGG 470
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 435 TCCAGTTCAAAGCCATGTATCGAGTAAATCCGTGTGCAAGAGATGGCATCTTTTGTTTGG 494
Query 471 TACTAAAGAGACGTTTTTCGCTAAGCGTAAGGAGTTCGGGTTTAAAGACCCGTGGTTGTT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 495 TACTAAAGAGACGTTTTTCGCTAAGCGTAAGGAGTTCGGGTTTAAAGACCCGTGGCTGTT 554
Query 531 CGTGGTTGGGTTTAGTAGATGCACTGGGAAAATCCAATGGAAGGTTTTGGATTTGAGGAA 590
||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 555 CGTTGTCGGGTTTAGTAGATGCACTGGGAAGATCCAGTGGAAGGTTTTGGATTTGAGGAA 614
Query 591 TCTCACTTGGCACGAAATCCCGGCTATGCCTTGTAGAGACAAAGTTTGTCCTCACGGTTT 650
|||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 615 TCTCACTTGGCATGAAATCCCTGCTATGCCTTGCAGAGATAAAGTTTGTCCTCACGGTTT 674
Query 651 CAGATCGGTTTCGATGCCTCGGGAAGGTACTATGTTTGTATGTGGCGGAATGGTTTCGGA 710
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 675 TAGATCGGTTTCGATGCCTCGCGAAGGTACTATGTTTGTATGTGGTGGAATGGTTTCGGA 734
Query 711 TTCGGATTGCCCTCTTGATTTGGTGTTGAAGTACGATATGGTGAGGAATCATTGGACTGT 770
||| ||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 735 TTCTGATTGTCCTCTTGATTTGGTGTTGAAGTATGATATGGTGAAGAATCATTGGACTGT 794
Query 771 CACGaaaaaaaTGATAACCGCGAGGTCGTTTTTTGCTAGCGGTGTGATCGATGGGATGAT 830
||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 795 CACTAACAAGATGATAACCGCGAGGTCGTTTTTCGCTAGCGGTGTGATCGATGGGATGAT 854
Query 831 ATACGCGGCAGGTGGAAATGCTGCGGATTTATATGAGCTTGATTCTGCCGAGGTTTTGAA 890
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 855 ATACGCGGCAGGTGGAAATGCTGCGGATTTATATGAGCTTGATTGTGCCGAGGTTTTGAA 914
Query 891 CCCTTTGGATGGGAATTGGCGGCCAGTTTCAAATATGGTCGCACACATGGCGTCTTACGA 950
|||||||||||||||||||||||||||||| || ||||| || || ||||||||||||||
Sbjct 915 CCCTTTGGATGGGAATTGGCGGCCAGTTTCGAACATGGTAGCTCATATGGCGTCTTACGA 974
Query 951 CACAGCAGTCTTAAACGGGAAGCTCTTGGTGACAGAAGGATGGCTATGGCCGTTCTTTGT 1010
|||||| || |||||||||||||| ||||| || ||||||||| ||||||||||||||||
Sbjct 975 CACAGCGGTTTTAAACGGGAAGCTTTTGGTAACGGAAGGATGGTTATGGCCGTTCTTTGT 1034
Query 1011 ATCCCCAAGAGGTCAAGTTTATGACCCGAGGACGGATCAATGGGAAACAATGTCAATGGG 1070
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 ATCCCCGAGAGGTCAAGTTTATGACCCGAGGACGGATCAATGGGAAACAATGTCAATGGG 1094
Query 1071 GTTAAGAGAAGGATGGACCGGGACAAGTGTCGTGATTTATGATCGGTTGTTTATAGTTTC 1130
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1095 GCTAAGAGAAGGATGGACCGGGACGAGTGTCGTGATTTATGATCGGTTGTTTATAGTTTC 1154
Query 1131 GGAATTAGAGAGAATGAAGATGAAGGTTTATGATCCGGTTACGGATTCGTGGGAGACGAT 1190
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1155 GGAGTTAGAGAGAATGAAGATGAAGGTTTATGATCCGGTTACAGATTCGTGGGAGACGAT 1214
Query 1191 TAACGGACCGGAATTGCCTGAGCAGATTTGTAGACCGTTTGCGGTTAACTGTTACGGGAA 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1215 TAACGGACCGGAATTGCCTGAGCAGATTTGTAGACCGTTTGCGGTTAACTGTTATGGGAA 1274
Query 1251 CAGAGTATTTGTGGTTGGTAGGAATCTTCATCTCGCGGTTGGGAATATTTGGCAGTCGGA 1310
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 CAGAGTATATGTGGTTGGTAGGAATCTTCATCTCGCGGTTGGGAATATTTGGCAGTCGGA 1334
Query 1311 GAATAAGTTTGGTGTGAGGTGGGAGGTCGTTGAGTCGCCGGAGCGTTATGCTGGTATAAC 1370
||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 1335 GAATAAGTTTGCTGTGAGGTGGGAGGTTGTTGAGTCGCCGGAGCGTTATGCAGATATAAC 1394
Query 1371 TCCATCGAATTCTCAGATTCTTTTTGCTTAAAAGAGATTTGATAAATCTGTTTACTTTGG 1430
||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||
Sbjct 1395 TCCATCGAATTCTCAGATTCTTTTTGCTTAAAAGAGATTTGATCAGTCTGTTTGGTATGG 1454
Query 1431 ATTTC-AATTGTTTGTGAACCATATTGTATGAATAAGTAAA--CTTGTCTTGGAAACATC 1487
|||| || ||| |||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1455 -TTTCCAAATGTCTGTGAACCATATTGTATGAATAAGTAAAAACTTGTCTTAGTAACATC 1513
Query 1488 ATCATGATGTTTGAACTCTTGTATCAT 1514
|||||||||||||||||||||||||||
Sbjct 1514 ATCATGATGTTTGAACTCTTGTATCAT 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74698410960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5