BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473228
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30100.1 | Symbols: NCED5, ATNCED5 | nine-cis-epoxycarotenoi... 2856 0.0
> AT1G30100.1 | Symbols: NCED5, ATNCED5 | nine-cis-epoxycarotenoid
dioxygenase 5 | chr1:10571340-10573365 FORWARD LENGTH=2026
Length=2026
Score = 2856 bits (1546), Expect = 0.0
Identities = 1735/1827 (95%), Gaps = 9/1827 (0%)
Strand=Plus/Plus
Query 1 GCTCTCATGGCTTGTTCTTACGTATTAACACCAAACCCAACCAAACTCAATCTCTCCTTT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 38 GCTCTCATGGCTTGTTCTTACATATTAACACCAAACCCAACCAAACTCAATCTCTCCTTT 97
Query 61 GCTCCCTCCGATCTCGACGCTCCTTCGCCTTCATCCTCCGTTAGTTTCACCAACACTAAA 120
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 98 GCACCCTCCGATCTCGACGCTCCTTCGCCGTCATCCTCCGTTAGTTTCACCAACACTAAA 157
Query 121 CAAAGACGTCGTAAACTCTCCACAAACTCCGTCTCCGACACTCCAACTTTACTGAATTCC 180
| |||||| ||||||||||| ||||||||||||||||||| |||| | ||||||||| |
Sbjct 158 CCAAGACGCCGTAAACTCTCTGCAAACTCCGTCTCCGACACACCAAATCTACTGAATTTC 217
Query 181 CCAAACTACCCTTCTCCAAACCCCATGATTCCCGAAAAGGACAGTTCCCGTTGGAACCCT 240
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct 218 CCAAACTACCCTTCTCCAAACCCCATAATTCCCGAAAAAGACACTTCCCGTTGGAACCCT 277
Query 241 CTCCAACGCGCCGCCTCCGCCGCACTCGACTTCGCCGAAACCGCATTGGTAAGACGCGAA 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 278 CTCCAACGCGCCGCCTCCGCCGCACTCGACTTCGCCGAAACCGCATTGTTAAGACGCGAA 337
Query 301 CGTTCTAAACCTCTCCCTAAAACCGTTGATCCTCGCCATCAGATCTCCGGCAACTACGCT 360
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 338 CGTTCTAAACCTCTCCCTAAAACAGTTGATCCTCGCCATCAGATCTCCGGTAACTACGCT 397
Query 361 CCGGTGCCGGAACAATCCGTTAAATCATCTCTCTCCGTTGACGGAAAAATCCCTGAATGC 420
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 398 CCGGTACCGGAGCAATCCGTTAAATCATCTCTCTCCGTTGATGGAAAAATCCCTGACTGC 457
Query 421 ATTGACGGTGTTTATCTCCGTAACGGTGCTAATCCACTCTTTGAGCCAGTTTCTGGTCAT 480
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 458 ATTGACGGTGTTTACCTCCGTAACGGCGCTAATCCACTCTTCGAGCCAGTTTCTGGTCAT 517
Query 481 CACCTATTCGACGGTGACGGTATGGTTCACGCCGTTAAAATCACTAACGGTGACGCGAGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 518 CACCTATTCGACGGTGACGGTATGGTTCACGCCGTTAAAATCACTAACGGAGACGCGAGT 577
Query 541 TACTCGTGCCGGTTTACGGAAACCGAGAGATTGGTTCAAGAGAAACAACTCGGTTCTCCG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TACTCGTGCCGGTTTACGGAAACCGAGAGATTGGTTCAAGAGAAACAACTCGGTTCTCCG 637
Query 601 ATTTTTCCTAAAGCCATTGGTGAGCTACACGGTCACTCCGGCATCGCACGGTTGATGCTA 660
||||| |||||||| || ||||||||||| |||||||| || ||||||||||||||||||
Sbjct 638 ATTTTCCCTAAAGCTATAGGTGAGCTACATGGTCACTCTGGAATCGCACGGTTGATGCTA 697
Query 661 TTTTACGCACGTGGTTTATTCGGTTTATTAAATCACAAAAACGGAACCGGAGTTGCTAAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TTTTACGCACGTGGTTTATTCGGTTTATTAAATCACAAAAACGGAACCGGAGTTGCTAAC 757
Query 721 GCCGGTTTGGTTTATTTTCACGACCGGTTATTAGCTATGTCTGAAGACGATTTACCTTAC 780
|||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 758 GCCGGTTTGGTTTACTTCCACGACCGGTTATTAGCTATGTCTGAAGATGATCTACCTTAC 817
Query 781 CAAGTTCGTGTCACCGACAATGGCGATTTAGAGACGATCGGAAGATTCGATTTCGACGGA 840
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 818 CAAGTTCGTGTCACTGACAATGGCGATTTAGAGACCATCGGAAGATTCGATTTCGACGGA 877
Query 841 CAATTAAGCTCCGCCATGATCGCTCACCCGAAGATTGATCCAG-AGACGAAGGAGCTATT 899
||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 878 CAACTAAGCTCCGCCATGATCGCTCACCCGAAGATTGATCCGGTA-ACGAAGGAGCTATT 936
Query 900 CGCGTTGAGCTACGACGTCGTTAAGAAACCGTATTTGAAATACTTCAGATTCTCGCCGGA 959
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 937 TGCGTTGAGCTACGACGTCGTTAAGAAACCGTATTTGAAATACTTTAAATTCTCGCCGGA 996
Query 960 AGGTGAGAAATCGCCAGACGTGGAGATTCCTCTTGCGAGTCCAACGATGATGCACGATTT 1019
|||||||||||| || ||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct 997 AGGTGAGAAATCACCGGACGTTGAGATTCCTCTCGCCAGTCCGACGATGATGCACGATTT 1056
Query 1020 CGCGATCACTGAGAAATTCGTCGTGATTCCGGATCAACAAGTGGTATTTAAACTCTCCGA 1079
||||||||||||||| ||||| |||||||||||||||||||| || ||||| ||||||||
Sbjct 1057 CGCGATCACTGAGAATTTCGTTGTGATTCCGGATCAACAAGTTGTGTTTAAGCTCTCCGA 1116
Query 1080 TATGTTTCTTGGGAAATCTCCGGTTAAATACGACGGAGAGAAAATTTCCCGATTTGGAAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1117 TATGTTTCTTGGGAAATCTCCGGTTAAATACGACGGAGAGAAAATTTCCCGGTTTGGAAT 1176
Query 1140 TTTGCCCAGAAACGCTAAAGATGCGTCGGAGATGGTTTGGGTCGAGTCGCCGGAAACGTT 1199
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || ||
Sbjct 1177 TTTGCCTAGAAACGCTAAAGATGCGTCGGAGATGGTTTGGGTTGAGTCACCGGAGACTTT 1236
Query 1200 CTGTTTCCATCTTTGGAACGCTTGGGAATCGCCGGAGACCA-ATGAGGTTGTGGTGATTG 1258
|||||||||||||||||||||||||| || ||||||| || | |||||||| ||||| |
Sbjct 1237 TTGTTTCCATCTTTGGAACGCTTGGGAGTCACCGGAGA-CAGACGAGGTTGTAGTGATCG 1295
Query 1259 GATCTTGCATGACTCCGGCGGATTCGATCTTCAACGAGTGCGATGAGCAACTCAACAGTG 1318
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1296 GATCTTGCATGACTCCGGCGGATTCGATCTTCAACGAGTGCGATGAGCAGCTCAACAGTG 1355
Query 1319 TTTTATCGGAGATCCGGTTAAATCTCAAAACCGGAAAATCCACACGCAGAACTATAATTC 1378
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1356 TTTTATCAGAGATCCGGTTAAATCTCAAAACCGGGAAATCCACACGCAGAACTATAATTC 1415
Query 1379 CCGGTTCGGTTCAGATGAATCTTGAAGCTGGTATGGTAAACCGGAATCTTCTTGGGAGGA 1438
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1416 CCGGTTCGGTTCAGATGAATCTTGAAGCTGGTATGGTAAACCGAAATCTTCTCGGGAGGA 1475
Query 1439 AAACCCGGTACGCGTACCTAGCGATAGCTGAACCGTGGCCTAAAGTCTCAGGATTTGCAA 1498
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1476 AAACCCGGTACGCATACCTAGCCATAGCTGAACCGTGGCCTAAAGTCTCAGGATTCGCTA 1535
Query 1499 AAGTGGACCTTTCTACCGGAGAAGTGAAAAATCATTTTTACGGCGGTAAAAAATACGGTG 1558
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1536 AAGTTGATCTTTCTACCGGAGAAGTGAAAAATCACTTTTACGGCGGTAAAAAATACGGTG 1595
Query 1559 GTGAACCTTTTTTCTTACCGAGAGGGTTAGAATCTGACGGAGAAGATGACGGTTACATTA 1618
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 GTGAACCTTTTTTCTTACCTAGAGGGTTAGAATCTGACGGAGAAGATGACGGTTACATTA 1655
Query 1619 TGTCGTTTGTTCATGATGAGGAGAGTTGGGAATCGGAGCTTCATATTGTTAACGCCGTTA 1678
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 TGTCGTTTGTTCACGACGAGGAGAGTTGGGAATCGGAGCTTCATATTGTTAACGCCGTTA 1715
Query 1679 CGTTGGAACTAGAAGCAACCGTTAAATTGCCGTCAAGAGTACCGTATGGTTTCCACGGCA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 CGTTGGAACTAGAAGCAACCGTTAAATTGCCGTCAAGAGTACCGTATGGTTTCCACGGCA 1775
Query 1739 CTTTCGTGAATTCGGCGGATATGTTAAACCAGGCTTAGTAAACCGAATCCGGTT-CAGGT 1797
||||||||||||||||||||||||||||||||||||| || || || |||||| | |||
Sbjct 1776 CTTTCGTGAATTCGGCGGATATGTTAAACCAGGCTTA--AA-CCAAAACCGGTTGC-GGT 1831
Query 1798 TTGGTTTATTGTGCAGAGGCAGATTTT 1824
|||||||||||||||||| ||||||||
Sbjct 1832 TTGGTTTATTGTGCAGAGCCAGATTTT 1858
Score = 165 bits (89), Expect = 1e-39
Identities = 115/127 (91%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 1820 ATTTTTGTGAATACAAAATAG-TCTTTGTTTTCCCGAAGCGGTGGGAGCCAGCTTGAAGC 1878
||||||||||| || |||||| | ||| |||| ||||||||||||||||||||||||||
Sbjct 1889 ATTTTTGTGAAAAC-AAATAGAT-TTTTTTTTTTCGAAGCGGTGGGAGCCAGCTTGAAGC 1946
Query 1879 TTGTGTAAGTAGAAGTTTTGCTAAGCTCAGCTGGTTTCTGTTGCAtttttttGTGGTGTA 1938
||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| ||
Sbjct 1947 TTGTGTAAGTAGAAGTTTTGCTA-GCTCAGCTGGTCTCTGTTGCATTTTTTTCTGGTTTA 2005
Query 1939 TTAATAA 1945
| |||||
Sbjct 2006 TAAATAA 2012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96334845855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5