BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473229
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30110.1 | Symbols: ATNUDX25, NUDX25 | nudix hydrolase homol... 1380 0.0
> AT1G30110.1 | Symbols: ATNUDX25, NUDX25 | nudix hydrolase homolog
25 | chr1:10582074-10584080 FORWARD LENGTH=916
Length=916
Score = 1380 bits (747), Expect = 0.0
Identities = 860/913 (94%), Gaps = 13/913 (1%)
Strand=Plus/Plus
Query 1 CGTGTGCTTTGTGTTTGAAAG--AA-A-A-ACACACACACATGTTCTTCGTTGCTGCTTC 55
||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||
Sbjct 1 CGTGTGCTTTGTGTTTGAAAGAAAACACACACACACACACATGTTCTTCGTTGCTGCTTC 60
Query 56 GTTGGGTTAAAAACtttttttttttttttCTTGC-TTTTGCGAAGTCAAAGATAAAAAAT 114
|||||||||||||| |||| |||| |||||||| |||||| ||||||||||||| ||||
Sbjct 61 GTTGGGTTAAAAAC--TTTTCTTTTGTTTCTTGCTTTTTGCAAAGTCAAAGATAACAAAT 118
Query 115 AAATAAGTAAAATGGAGAATCTACCTCCTGGTTATCGTCCCAATGTTGGTGTTTGTCTAA 174
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 119 AAATAAGAAAAATGGAGAATCTACCACCTGGTTATCGTCCCAATGTTGGTGTTTGTCTAA 178
Query 175 TCAACTCGGATAATCTGGTATTTGTAGCTTCTAGATTGAATGTTCCTGGAGCATGGCAGA 234
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 TCAACTCGGATAATCTGGTATTTGTAGCTTCTAGATTGAATGTTCCAGGAGCATGGCAGA 238
Query 235 TGCCTCAGGGAGGCATTGAAGATGGGGAGGATCCAAAGTCAGCAGCCATGAGAGAGTTAC 294
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGCCACAGGGAGGCATTGAAGATGGGGAGGATCCAAAGTCAGCAGCCATGAGAGAGTTAC 298
Query 295 AAGAAGAAACTGGTGTCGTTTCAGCTGAAATAGTCTCTGAGGTTCCAAATTGGTTGACAT 354
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 299 AAGAAGAAACTGGTGTTGTTTCAGCTGAAATCGTCTCTGAGGTCCCAAATTGGTTGACAT 358
Query 355 ATGACTTCCCACCTGCAGTAAAAGCAAAGGTTAACCGTCTTTGGGGCGGTGAATGGCATG 414
|||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 ATGATTTTCCACCAGCAGTAAAAGCAAAAGTTAACCGTCTTTGGGGCGGTGAATGGCATG 418
Query 415 GTCAAGCTCAGAAATGGTTTTTAGTGAGACTGAGAAACGATGAGGACGAAAAAGAGATCA 474
|||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||
Sbjct 419 GTCAAGCTCAGAAATGGTATTTAGTGAGACTGAGGAACGATGAGGACGAGAAAGAGATCA 478
Query 475 ATCTAGCGAACAACGAAGCGGATTCAGAGTTTGCAGAGTGGAAATGGGCGAAACCAGAAG 534
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 479 ATCTAGCGAACAACGAAGCGGATTCAGAGTTTGCGGAGTGGAAATGGGCGAAGCCAGAAG 538
Query 535 AAGTGATAGAGCAAGCAGTGGATTACAAAAGGCCAACCTATGAAGAAGTCATCAAGACTT 594
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAGTGGTAGAGCAAGCAGTGGATTACAAAAGGCCAACCTATGAAGAAGTCATCAAGACTT 598
Query 595 TTGGTTCCATCTTGAACGATATAGGAAGAGCTGCTAAATGTAAATCAGCCAAGTGGTGAT 654
||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGGTTCGTTCTTAAACGACACAGGAAGAGCTGCTAAATGTAAATCAGCCAAGTGGTGAT 658
Query 655 ATAAGAAACCAAGAATCAAtgtttgtctttttattattttttgttaactgttgtttatct 714
|||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 659 ATAAGATACCAAGAACCAATGTTTGTCTTTTTATT-TTTTTTGTTAACTGTTGTTTTTCT 717
Query 715 ttttttggggggttctttttaGTAGAACCCTTTTGGAATGCAAAAAGCTTTCTCTAGGTg 774
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 718 TTTTTTGGGCGGTTCTTTTTAGTAGAACCCTTTTGGAATGCAAAA-GCTTTCTCTAGGGG 776
Query 775 tttattacttttcatttttgtaaattggttattggtac-tagaaggttttttggttttat 833
||| ||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 777 TTTTTTACTTT-CATTTTTGTAAATTGGTTATTGGTACGTAGAAAGTTTTTTTGTTTTAT 835
Query 834 tttaACGTGGAGTT-ATTGTAATAAAGTCGTTGTTTGGATTCAGAAAGAAAAGAGTTGTG 892
|||||| ||| | | ||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 836 TTTAACATGGGGGTCATTGTAATAAAGTCGTTGTCTGGATTCAGAAGGAAATGAGTTGTG 895
Query 893 TATGTGTTTATAA 905
|||||||||||||
Sbjct 896 TATGTGTTTATAA 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44206049360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5