BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473230
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30120.1 | Symbols: PDH-E1 BETA | pyruvate dehydrogenase E1 ... 2283 0.0
AT2G34590.1 | Symbols: | Transketolase family protein | chr2:1... 1133 0.0
> AT1G30120.1 | Symbols: PDH-E1 BETA | pyruvate dehydrogenase E1
beta | chr1:10584160-10586635 REVERSE LENGTH=1569
Length=1569
Score = 2283 bits (1236), Expect = 0.0
Identities = 1370/1434 (96%), Gaps = 12/1434 (1%)
Strand=Plus/Plus
Query 65 AAATTGTCCCGAGCTCTGTGC-----AAAAATGTCTTCGATAATCCATGGAGCTGGAGCT 119
||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 129 AAATTGTCCCGAGCTTTGAGCATATAAAAAATGTCTTCGATAATCCATGGAGCTGGAGCT 188
Query 120 GCTACGACGACGTTATCGACGTTTAATTCCGTCGATTCCAAGATACTC---GTAGCTCCT 176
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 189 GCTACGACGACGTTATCGACGTTTAATTCCGTCGATTCCAAGAAACTCTTCGTTGCTCCT 248
Query 177 TCTCGCACAAATCTTTCAGTGAGGAGCCAGAGATATATAGTGGCTGGATCTGATGCGAGT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 TCTCGCACAAATCTTTCAGTGAGGAGCCAGAGATATATAGTGGCTGGATCTGATGCGAGT 308
Query 237 AAGAGGAAGAACTTTGGTTCTGGACTCAGAGTTCGTCACTCTCAGAAATTGATTCCAAAT 296
|||| || | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 309 AAGAAGA-G--CTTTGGTTCTGGACTTAGAGTTCGTCACTCTCAGAAATTGATTCCAAAT 365
Query 297 GCTGTTGCGACGAAGGAGGCGGACACATCTGCGAGCACTGGACATGAACTATTGCTTTTC 356
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 366 GCTGTTGCGACGAAGGAGGCGGATACGTCTGCGAGCACTGGACATGAACTATTGCTTTTC 425
Query 357 GAGGCTCTTCAGGAAGGTCTGGAAGAAGAAATGGACAGAGATCCACATGTCTGTGTTATG 416
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 426 GAGGCTCTTCAGGAAGGTCTGGAAGAAGAGATGGACAGAGATCCACATGTATGTGTTATG 485
Query 417 GGTGAAGATGTTGGCCATTACGGAGGCTCTTACAAGGTAACCAAAGGTCTTGCTGATAAA 476
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 486 GGTGAAGATGTTGGCCATTACGGAGGTTCCTACAAGGTAACCAAAGGCCTTGCTGATAAA 545
Query 477 TTCGGCGACCTCAGGGTTCTCGACACTCCTATTTGTGAAAATGCATTCACCGGTATGGGC 536
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TTTGGTGACCTCAGGGTTCTCGACACTCCTATTTGTGAAAATGCATTCACCGGTATGGGC 605
Query 537 ATTGGAGCCGCCATGACTGGTCTAAGACCCGTCATTGAAGGTATGAACATGGGTTTCCTC 596
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 606 ATTGGAGCTGCCATGACTGGTCTAAGACCCGTTATTGAAGGTATGAACATGGGTTTCCTC 665
Query 597 CTCCTCGCCTTCAACCAAATCTCTAACAACTGTGGAATGCTTCACTACACATCTGGTGGT 656
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 666 CTCCTCGCCTTCAACCAAATCTCCAACAACTGTGGAATGCTTCACTACACATCCGGTGGT 725
Query 657 CAGTTCACGATCCCAGTTGTCATCCGTGGGCCTGGTGGAGTGGGACGTCAGCTTGGCGCT 716
||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 726 CAGTTTACGATCCCGGTTGTCATCCGTGGACCTGGTGGAGTGGGACGCCAGCTTGGTGCT 785
Query 717 GAGCATTCACAGCGGTTAGAATCTTACTTCCAGTCCATCCCTGGGATCCAGATGGTTGCT 776
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 786 GAGCATTCACAGAGGTTAGAATCTTACTTTCAGTCCATCCCTGGGATCCAGATGGTTGCT 845
Query 777 TGCTCTACTCCTTACAACGCCAAAGGCTTGATGAAAGCCGCGATAAGAAGCGAGAACCCC 836
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 846 TGCTCAACTCCTTACAACGCCAAAGGGTTGATGAAAGCCGCAATAAGAAGCGAGAACCCT 905
Query 837 GTGATTCTGTTCGAACACGTTCTGCTTTACAATCTCAAGGAGAAAATCCCGGATGAAGAT 896
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 906 GTGATTCTGTTCGAACACGTGCTGCTTTACAATCTCAAGGAGAAAATCCCGGATGAAGAT 965
Query 897 TACATCTGTAACCTTGAAGAAGCTGAGATGGTCAGACCTGGCGAGCACATTACCATCCTC 956
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TACGTCTGTAACCTTGAAGAAGCTGAGATGGTCAGACCTGGCGAGCACATTACCATCCTC 1025
Query 957 ACTTACTCGCGGATGAGGTACCATGTGATGCAGGCAGCAAAAACTCTGGTGAACAAAGGG 1016
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 ACTTACTCGCGAATGAGGTACCATGTGATGCAGGCAGCAAAAACTCTGGTGAACAAAGGG 1085
Query 1017 TATGACCCTGAGGTTATCGACATCAGGTCACTGAAACCCTTCGACCTTCACACAATCGGA 1076
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1086 TATGACCCCGAGGTTATCGACATCAGGTCACTGAAACCGTTCGACCTTCACACAATTGGA 1145
Query 1077 AACTCAGTAAAGAAAACACACCGGGTTTTGATCGTGGAGGAGTGTATGAGAACTGGTGGG 1136
||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1146 AACTCGGTGAAGAAAACACATCGGGTTTTGATCGTGGAGGAGTGTATGAGAACCGGTGGG 1205
Query 1137 ATTGGGGCAAGTCTTACAGCTGCCATCAACGAGAACTTCCATGACTACTTAGATTCTCCG 1196
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1206 ATTGGGGCAAGTCTTACAGCTGCCATCAACGAGAACTTTCATGACTACTTAGATGCTCCG 1265
Query 1197 GTGATGTGCTTATCTTCTCAAGACGTTCCTACACCATACGCTGGTACACTGGAGGAGTGG 1256
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1266 GTGATGTGTTTATCTTCTCAAGACGTTCCTACACCTTACGCTGGTACACTGGAGGAGTGG 1325
Query 1257 ACAGTGGTTCAACCGGCTCAGATCGTGACCGCTGTCGAGCAGCTTTGCCAGTAAATTCAT 1316
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 ACCGTGGTTCAACCGGCTCAGATCGTGACCGCTGTCGAGCAGCTTTGCCAGTAAATTCAT 1385
Query 1317 ATTTATCCGATGAACCGTTAATTATCATTTACCTCTCCAATTCCTTTCTCTTTAGCTTAG 1376
|||||||||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||
Sbjct 1386 ATTTATCCGATGAACCATTATTTATCATTTACCTCTCCATTTCCTTTCTCTGTAGCTTAG 1445
Query 1377 TTCTTAAAGAATTTGTCTAAGATGGTTTGTTTTTGTCAAAGTTTGTCTCCTTTGTTGTGT 1436
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1446 TTCTTAAAGAATTTGTCTAAGATGGTTTGTTTTTGTTAAAGTTTGTCTCCTTTGTTGTGT 1505
Query 1437 CTTGGAATATGGTTTTGTAACTCAGAATGTTTGTTTGTTAATTTTATCTCCCAC 1490
||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1506 CTTTTAATATGGTTT-GTAACTCAGAATGTTTGTTTGTTAATTTTATCTCCCAC 1558
> AT2G34590.1 | Symbols: | Transketolase family protein | chr2:14568811-14570969
REVERSE LENGTH=1491
Length=1491
Score = 1133 bits (613), Expect = 0.0
Identities = 1041/1245 (84%), Gaps = 40/1245 (3%)
Strand=Plus/Plus
Query 86 AAAAATGTCTTCGATAATCCATGGAGCTGGAGCTGCTACGACGACGT-TATCGACGTTTA 144
|||||||||| ||||| |||| |||||||||||||| | ||| | | | ||| ||||||
Sbjct 122 AAAAATGTCTGCGATACTCCAAGGAGCTGGAGCTGC-A--ACGGC-TCTCTCGCCGTTTA 177
Query 145 ATTCCGTCGATTCCAAGATACTCGTAGCTCCTTCTCGCACAAATCTTTCAGTGAGGAGCC 204
|||| |||||||||| | |||||| |||||||||||| | ||||||||||||||||
Sbjct 178 ATTCTATCGATTCCAACAAACTCGTTGCTCCTTCTCGCTCTTCTCTTTCAGTGAGGAGCA 237
Query 205 AGAGATATATAGTGGCTGGATCTGATGCGAGTAAGAGGAAGAACTTTGGTTCTGGACTCA 264
||||||| || || || ||||||||| ||| | | ||| |||||||||| | |||
Sbjct 238 AGAGATACATTGTTGCCGGATCTGAT---AGT-A-A--AAG--CTTTGGTTCTAGCCTC- 287
Query 265 G-AGTTCGTCACTCTCAGAAATTGATTCCAAATGCTGTTGCGACGAA---GG--A--G-- 314
| || ||||| |||| || ||||| |||||||||||| ||||||| || | |
Sbjct 288 GTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGACGAAGGCGGACACTGCT 347
Query 315 GCG-G-AC-ACATC-TGC-GAGCACTGGACATGAACTATTGCTTTTCGAGGCTCTTCAGG 369
||| | | || || | | ||| |||||||||| ||||| ||||||||||||||||| |
Sbjct 348 GCGAGCTCTACTTCAT-CAAAGC-CTGGACATGAGCTATTACTTTTCGAGGCTCTTCAAG 405
Query 370 AAGGTCTGGAAGAAGAAATGGACAGAGATCCACATGTCTGTGTTATGGGTGAAGATGTTG 429
||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 406 AAGGTCTAGAAGAAGAGATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTAG 465
Query 430 GCCATTACGGAGGCTCTTACAAGGTAACCAAAGGTCTTGCTGATAAATTCGGCGACCTCA 489
|||||||||||||||| ||||| ||||| ||||| || |||||||| || ||||| ||||
Sbjct 466 GCCATTACGGAGGCTCATACAAAGTAACTAAAGGCCTAGCTGATAAGTTTGGCGATCTCA 525
Query 490 GGGTTCTCGACACTCCTATTTGTGAAAATGCATTCACCGGTATGGGCATTGGAGCCGCCA 549
||||||| |||||||| || |||||||| || ||||||||||||||||||||||||||||
Sbjct 526 GGGTTCTGGACACTCCAATCTGTGAAAACGCCTTCACCGGTATGGGCATTGGAGCCGCCA 585
Query 550 TGACTGGTCTAAGACCCGTCATTGAAGGTATGAACATGGG-TTTCCTCCTCCTCGCCTTC 608
|||| || |||||||||||||| ||||||||||||||||| |||| | ||| | ||||||
Sbjct 586 TGACAGGACTAAGACCCGTCATCGAAGGTATGAACATGGGGTTTC-TACTCTTAGCCTTC 644
Query 609 AACCAAATCTCTAACAACTGTGGAATGCTTCACTACACATCTGGTGGTCAGTTCACGATC 668
||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||| |||
Sbjct 645 AACCAAATCTCCAACAACTGTGGTATGCTTCACTATACATCCGGTGGTCAATTCACTATC 704
Query 669 CCAGTTGTCATCCGTGGGCCTGGTGGAGTGGGACGTCAGCTTGGCGCTGAGCATTCACAG 728
|| ||||| |||||||||||||| || ||||| || ||||| || || |||||||| |||
Sbjct 705 CCGGTTGTTATCCGTGGGCCTGGAGGTGTGGGCCGGCAGCTCGGAGCCGAGCATTCCCAG 764
Query 729 CGGT-TAGAATCTTACTTCCAGTCCATCCCTGGGATCCAGATGGTTGCTTGCTCTACTCC 787
|| | | || |||||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 765 CG-TCTCGAGTCTTACTTCCAGTCAATCCCTGGGATCCAGATGGTGGCTTGCTCAACACC 823
Query 788 TTACAACGCCAAAGGCTTGATGAAAGCCGCGATAAGAAGCGAGAACCCCGTGATTCTGTT 847
||||||||| ||||| ||||||||||| ||||||||||| ||||| || |||||||||||
Sbjct 824 TTACAACGCTAAAGGATTGATGAAAGCGGCGATAAGAAGTGAGAATCCTGTGATTCTGTT 883
Query 848 CGAACACGTTCTGCTTTACAATCTCAAGGAGAAAATCCCGGATGAAGATTACATCTGTAA 907
|||||||||||||| || || |||||||||| || ||||||||||| ||||| |||||
Sbjct 884 TGAACACGTTCTGCTCTATAACCTCAAGGAGAGTATTCCGGATGAAGAATACATATGTAA 943
Query 908 CCTTGAAGAAGCTGAGATGGTCAGACCTGGCGAGCACATTACCATCCTCACTTACTCGCG 967
|| |||||||| || ||||||||||| || || ||||| || || || || || || |
Sbjct 944 TCTGGAAGAAGCAGAAATGGTCAGACCCGGTGAACACATCACGATACTGACGTATTCAAG 1003
Query 968 GATGAGGTACCATGTGATGCAGGCAGCAAAAACTCTGGTGAACAAAGGGTATGACCCTGA 1027
||||||||||||||| |||||||| ||||| || |||||||||||||||||||| || ||
Sbjct 1004 GATGAGGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGTATGATCCAGA 1063
Query 1028 GGTTATCGACATCAGGTCACTGAAACCCTTCGACCT-TCACACAATCGGAAACTCAGTAA 1086
|||||||||||| ||||| |||| || || || || | ||||||| |||||||| || |
Sbjct 1064 GGTTATCGACATAAGGTCGTTGAAGCCGTTTGATCTCT-ACACAATTGGAAACTCGGTGA 1122
Query 1087 AGAAAACACACCGGGTTTTGATCGTGGAGGAGTGTATGAGAACTGGTGGGATTGGGGCAA 1146
|||| ||||||||||||||||| |||||||| ||||||||||| || || || || || |
Sbjct 1123 AGAAGACACACCGGGTTTTGATTGTGGAGGAATGTATGAGAACGGGAGGAATCGGAGCCA 1182
Query 1147 GTCTT-ACAGCTGCCATCAACGAGAACTTCCATGACTACTTAGATTCTCCGGTGATGTGC 1205
|| || || ||||| || ||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 1183 GT-TTGACGGCTGCAATAAACGAGAACTTTCATGATTACTTAGATGCTCCGGTGATGTGT 1241
Query 1206 TTATCTTCTCAAGACGTTCCTACACCATACGCTGGTACACTGGAGGAGTGGACAGTGGTT 1265
|| |||||||| || || || || || ||||| |||||| |||| || ||||| || |||
Sbjct 1242 TTGTCTTCTCAGGATGTCCCAACTCCTTACGCCGGTACATTGGAAGAATGGACGGTTGTT 1301
Query 1266 CAACCGGCTCAGATCGTGACCGCTGTCGAGCAGCTTTGCCAGTAA 1310
|| || ||||||||||| || || ||||| || ||||||||||||
Sbjct 1302 CAGCCAGCTCAGATCGTCACTGCCGTCGAACAACTTTGCCAGTAA 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73493597880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5