BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473232
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1672 0.0
> AT1G30130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1365 (InterPro:IPR010775);
Has 1789 Blast hits to 1789 proteins in 449 species:
Archae - 0; Bacteria - 824; Metazoa - 0; Fungi - 6;
Plants - 39; Viruses - 0; Other Eukaryotes - 920 (source: NCBI
BLink). | chr1:10587602-10589760 FORWARD LENGTH=1326
Length=1326
Score = 1672 bits (905), Expect = 0.0
Identities = 1125/1221 (92%), Gaps = 55/1221 (5%)
Strand=Plus/Plus
Query 1 agagatagagag-agagaTATGGAATTGCTCTATCTCCTCGGTTCAATCATCTACACTTC 59
||||| |||| | ||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 47 AGAGACAGAG-GTAGAGATATGGAATTGCTCTTTCTCCTCTGTTCAATCATCTACACTTC 105
Query 60 AACCActtccatcttcttctctcttctcctcccgtttcgcttccttctccaccgtttcct 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 106 AATCACTTCCATCTTCTTCTCTCTTCTCCTCCCGTTTCGCTTCCTTCTCCACCGTCTCCT 165
Query 120 tccttcACGCGCCGCCGTCGATCCTAATGTCTGCTTT-TACGAAGGCACAGTCTGGCACG 178
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 166 TCCTTCACGCGCCGCCGTCGATCCTAATGTCT-CTTTCTACGAAGGCACAGTCTGGCACG 224
Query 179 ACCGTCTCCGTCCTGTCCGCCACTCGTTCCGTTATTCCGTTCGTTACGCACTCTTCGACC 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 225 ACCGTCTCCGTCCTGTCCGCCACTCTTTCCGTTATTCCGTTCGTTACGCACTCTTTGACC 284
Query 239 TCGATC-AAGCTATTACCACTCCGCCGGATCATCTCTCCGCCGATGAAGCTCGCCGTGTT 297
|||| | ||||||||| ||| |||||||||||| |||||||||| |||||||||||||||
Sbjct 285 TCGA-CAAAGCTATTAACACACCGCCGGATCATTTCTCCGCCGACGAAGCTCGCCGTGTT 343
Query 298 TCTCATACCACCGGGCCAAT-TTATCTATTGACAATACCACCAAGCGTTGGATATGAACA 356
|||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 344 TCTCGTACCACCGGGCCAATATT-TCTATTGACAATACCACCAAGCGTTGGATATGAACA 402
Query 357 AAACCCATTGAGTTTGTATTATTGCTATGACTTGGAAGAGTCAAGTAAGCGCTTAAGTAA 416
||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||
Sbjct 403 AAACCCATTGAGTTTATACTATTGCTATGACTTGGAAGGGTCAAGTAAGCGCTTAAGTAA 462
Query 417 ATGCATTGCTCAGGTTACAAATACGCCGTGGGGGGAACGAGTGACATTTGTATTCGACCC 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 463 ATGCATTGCTCAGGTTACAAATACGCCGTGGGGGGAACGAGTGACATTTGTATTTGACCC 522
Query 477 TGAATCTGACTTGGTTGCTAAATCGTTACAAGTCAGTCCTTTCATGGATATGCTTGGGAA 536
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 523 TGAATCTGACTTGGTTGCTAAATCATTACAAGTCAGTCCTTTCATGGATATGCTTGGGAA 582
Query 537 TTGGAAAATCAGAGCTAATGAACCTGGAGATGATTTATCTGTCTCCATTGAATCGCAACA 596
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 583 TTGGAAAATCAGAGCTAATGAACCTGGAGATGATTTATCTGTCTCCATTGCATCTCAACA 642
Query 597 TCCTCATCTCGGTAACTATTTCTCTGCGACATTAAAGGCGAAAAGGATACCCCTAAT-GC 655
||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 643 TCCTCATTTCGGTAACTATTTCTCTGCGACATTAAAGGCGAAAAGGATACCCCT-ATCGC 701
Query 656 GGGTGTCTGATCCCGCAGTTTTCTTCTGGTTGATGCCTCATAAGGTTGCGATATGGATTT 715
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 702 GGGTGTCTGATCCCGCTGTTTTCTTCTGGTTGATGCCTCATAAGGTTGCGATATGGATCT 761
Query 716 ATTGGCATGCACTTAAACTCTGGTGGAAGAGTGTACCTTTCATTCAACACCCGAGATACT 775
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 ATTGGCATGCACTTCAACTCTGGTGGAAGAGTGTACCTTTCATTCAACACCCGAGATACT 821
Query 776 CGAACCCATCATACAGGGAGGAAGCAGCGAAACGCGATCAAGAACTTCGTTGCCCCGGGT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 CGAACCCATCATACAGGGAGGAAGCAGCGAAACGCGATCAAGAACTTCGTTGCCCCGGGT 881
Query 836 TAGATGGGTCTGATTCCGATAAAACCATCAAATTTGATGGGTTAAAAGCAGATGGTTGTA 895
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 882 TAGATGGGTCTGATTCTGATAAAACCAACAAATTTGATGGGTTAAAAGGAGATGGTTGTA 941
Query 896 GT--T--TT--GGAGGATGTCGCTTTGCGTGGCGAGATGCTAACTGGCCTTGGTCATGAA 949
|| | || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 942 GTAGTAGTTTTGGAGGATGTCGCTTTGCGTGGCGAGATGCGAACTGGCCTTGGTCATGAA 1001
Query 950 TATTGAATACATACACTCTGAAGGGGGATAGCAGATCGTCAAGAGTT-CGGAATTTACGA 1008
|| |||||||||| ||||||| ||||||||| ||||||||| |||||||||||
Sbjct 1002 TA-------CATACACTCTCAAGGGGG-TAGCAGATCATCAAGAGTTTCGGAATTTACGG 1053
Query 1009 TCATTTATCCAATGGTATGATTGGTATAAATCATT-GAC--T-T-GTTT-AGAT--A-TT 1059
||||| ||||||| |||||||||||||||||||| || | | || | | || | ||
Sbjct 1054 TCATTG-TCCAATGATATGATTGGTATAAATCATTTGAAAATCTCGTCTCAAATTTAGTT 1112
Query 1060 GGCTT-------------CT--AA-ACAAGTGAACCTTGTTGACAAATAGAAAA--CAAA 1101
||||| || || |||||||||||||||||| ||||||||| |||
Sbjct 1113 GGCTTGTTTAAAATTTGGCTTGAACACAAGTGAACCTTGTTGATTAATAGAAAAATCAA- 1171
Query 1102 CTTTGCATTTTGATTGATTTGTTTGTAATAATTCTCATCTCCGAAAATCCTAATCTTTGT 1161
||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||
Sbjct 1172 CTTTGCATTTTGATTGATTCGTTTGTAATAATTCTCATCTCCGAAAATCCTAACCTCTGT 1231
Query 1162 TTGTTGATAAGTTTTCGATGT 1182
|||||||||||| ||| ||||
Sbjct 1232 TTGTTGATAAGTCTTC-ATGT 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5