BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473234
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30160.2 | Symbols: | Protein of unknown function (DUF295) ... 1653 0.0
> AT1G30160.2 | Symbols: | Protein of unknown function (DUF295)
| chr1:10606251-10607784 FORWARD LENGTH=1273
Length=1273
Score = 1653 bits (895), Expect = 0.0
Identities = 1166/1287 (91%), Gaps = 57/1287 (4%)
Strand=Plus/Plus
Query 1 TCTACAATAATGTCTCGACTTGTCTCCAAGCTCTCTCCCT-TCATTCACAAGAA-CAGTA 58
||| ||||||||||||| ||| |||||||||||||| ||| |||||||||| || |||||
Sbjct 15 TCTGCAATAATGTCTCGGCTTCTCTCCAAGCTCTCT-CCTCTCATTCACAA-AAGCAGTA 72
Query 59 GGAGCATTCGTTCGTTTTCATCCTCAACGACCGGCCCATGTGTTTCTATTTGTACCATTA 118
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 73 GGAACATTCGTTCGTTTTCATCCTCAACGACCGGCCCATGTGTTTCTATTTGTACCGTTG 132
Query 119 TGGAGCCCTCTCCGGACGGCAACCTCGGACAACTCCTGTTGTTCAACATACCAGATTTGA 178
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 133 TGGAACCCTCTCCGGACGGCAACCTCGGACAAGTCCTGTTGTTCAACATACCAGATATGA 192
Query 179 AGTTAGTCACAGCGGACAAAACATATCCCGACGAGCTTTATGACGCCCAGTTGGTGGGAG 238
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 193 AGTTAGTCACAGCGGACAAAATATATCCCGACGAGCTTTATGACGCCCAGTTGGTGGGAG 252
Query 239 CTTCTCATGGATGGGGACTTTTCTCCAATAGAACAAATCGGTCGGTACTTCTCAGCGACT 298
|||| ||||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 253 CTTCCCATGGATGGGGACTTTTCTCCGATAGAACAAATCGGTCGGCACTTATCAGCGACT 312
Query 299 ATTTGAACCCCTATGCTTCCAAGTCAAAACCAAAGATGATTCATCTGCCATTTTTTACTC 358
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 313 ATTTGAACCCCTATGCTTCCAAGTCAAAACCAAAGATGATTCATCTACCTTTTTTTACTC 372
Query 359 CAACGTACTCTGGCCAAACCGAAGTCGTGTGCAACGTGGCAATGTCCTCTCCTCCTCCTG 418
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 CAATGTACTCTGGCCAAACCGAAGTCGTGTGCAACGTGGCAATGTCCTCTCCTCCTCCTG 432
Query 419 ATCAAGACGACGACCAAGAAGATTGGGTCGTTGGCATCAAGTTCTTGGGTAGACAGCTTA 478
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 433 ATCAAGACGACGACCATGAAGATTGGGTAGTTGGCATCAAGTTCTTGGGTAGACAGCTTA 492
Query 479 GTCTCTGCAGGCCCCGTCGTGACCTTCGTTGGACTAACATCCTAACCCCTTTTGAGTCAT 538
| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 493 GCCTCTGCAGGCCTCGTCATGACCTTCGTTGGACTAACATCCTAACCCCTTTTGAGTCGT 552
Query 539 GGGAAATCTCAAAACTAATGTATTCCAAGAAAGACCAAAGGTTCTATTTGCTTGCTCCTG 598
||||| ||||| |||| |||||||| || ||||||||| |||||||||||||||||||||
Sbjct 553 GGGAAGTCTCAGAACTCATGTATTCTAAAAAAGACCAACGGTTCTATTTGCTTGCTCCTG 612
Query 599 GAGGCAACTACTTATGCTCCTGGGATCTCAACTTCAAGGAAGACAAGAAGCCTAAGTTCA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GAGGCAACTACTTATGCTCCTGGGATCTCAACTTCAAGGAAGACAAGAAGCCTAAGTTC- 671
Query 659 AGGAAGACAAGAAGCCTAAGTTCCATGAGTTGGTCTTGCACGACCTTCCCAACATGCCAC 718
|| | | | | |||||||||||| ||||||||||||||||||
Sbjct 672 -------CA-------T--G----A-G--TTGGTCTTGCACAACCTTCCCAACATGCCAC 708
Query 719 GTTCCCACTCGAAGCTGTTGGATTCATTCAGCAGGGAGGATCATTGGGTGGAGTCACCTT 778
|||||| || ||||| ||| ||||| | | |||| |||||||||||||||||||||||||
Sbjct 709 GTTCCCTCTGGAAGCAGTTAGATTCCTACGGCAGAGAGGATCATTGGGTGGAGTCACCTT 768
Query 779 CTGGCGAAAGTA-C-T-GT-----G--------AATACTCCCCTGAAAACACCAGTAACT 822
| ||||||||| | | || | ||||||| |||||||||||||||||||
Sbjct 769 CCGGCGAAAGTTTCCTTGTCAAATGGTTTTGTGAATACTCGCCTGAAAACACCAGTAACT 828
Query 823 GGTGCAAATCACCAACTGTTCTGGTTTTCAGAGAGGAA-AGA-------TGGAAGGAAAC 874
||||||| ||||| | ||| |||| |||||||||||| ||| ||||||||||
Sbjct 829 GGTGCAAGTCACCGATTGTAATGGTGTTCAGAGAGGAAGAGACGAAAGATGGAAGGAAAA 888
Query 875 ACATGCGTTACACAGATGACATTGGAGATTTGTGCATTTTCATTTCAAAGGGAGAGGATT 934
||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 889 ACATGCGTTACACAGATGACATTGGAGATCTATGCATTTTCATTTCGAAGGGAGAGGATT 948
Query 935 TCTGCGTCAAGGCTAGCTCTCACCCTGGACTCCAACCTAACTCCATCTGTTTACATGGCC 994
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 949 TCTGCGTCAAGGCTAGCTCTTGCCCTGGACTCCAACCTAACTCCATCTCTTTACATGGCC 1008
Query 995 GTTTGTTTGCGATTCTCAATCTCAC-AAATAGAACCCTCGGTTGCTACGAATATCCCGAA 1053
|||||||||||||||| |||||||| ||| |||||| | |||||||||||||||||| ||
Sbjct 1009 GTTTGTTTGCGATTCTTAATCTCACGAAA-AGAACCATGGGTTGCTACGAATATCCCCAA 1067
Query 1054 GGCATACCAAAAAGGATTCCCTATTTACCCTACTGGCTTCCTCCGTTTTCTCCTTAGCGC 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GGCATACCAAAAAGGATTCCCTATTTACCCTACTGGCTTCCTCCGTTTTCTCCTTAGCGC 1127
Query 1114 TCTACTTGCTTCGTTAGTC-TTATTGTGTGGTTTGTTCTTTTAGGTTTGGATTACTAAGA 1172
|||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TCTAGTTGCTTCATTAGTCCTTATTGTGTGGTTTGTTCTTTTAGGTTTGGATTACTAAGA 1187
Query 1173 TCATCTAATTATATTTCTCTAATCTGAGAAAATTGAAGACTTCATTTGGTATTTGGTTGA 1232
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1188 TCATATAATTATATTTTTCTAATCTGAGAAAATTGAAGACTTCATTTGGTATTTGGCTGG 1247
Query 1233 TGTCACATGGAGTA-AATATCTGATGT 1258
|||||||||||||| || |||||||||
Sbjct 1248 TGTCACATGGAGTATAA-ATCTGATGT 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61847071440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5