BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473236
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30170.1 | Symbols: | Protein of unknown function (DUF295) ... 1917 0.0
AT1G30160.2 | Symbols: | Protein of unknown function (DUF295) ... 143 5e-33
> AT1G30170.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:10607888-10609618 REVERSE LENGTH=1370
Length=1370
Score = 1917 bits (1038), Expect = 0.0
Identities = 1178/1245 (95%), Gaps = 11/1245 (1%)
Strand=Plus/Plus
Query 1 CTCTCTCTCTTTTAGTTAAGGGTAGAGAGACTCCAAAGTACATCAACTTAATTTTTGGG- 59
||||| |||||| | |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 15 CTCTCCCTCTTTGAATTAAGGGTAGAGAGACTCCAAAATACATCAACTTAATTTTTGGGT 74
Query 60 -TTTCTTCTGCAATAATGTCTCGGTTTCTCTCCAAGCTCGCTCCCGTTATTCACAAGAGG 118
||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||
Sbjct 75 TTTTCTTCTGCAATAATGTCTCGGCTTCTCTCCAAGCTCTCTCCCCTCATTCACAAGAGG 134
Query 119 AGCGTTCGTTCGTTTTCATCCTCCACGACAGG-CCCGTATTTGTC-GCTTAGTCTCAGTG 176
|||||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||||
Sbjct 135 AGCGTTCGTTCGTTTTCATCCTCCACGACAGGTCCC-TATTTG-CAGCTTAGTCTCAGTG 192
Query 177 CAAAACCCTCGTCGGAAGGCGTCCTCAACATCGGAGAAGTGGTTTTGTACGACCCTGCTA 236
||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 193 CAAAACCCTCGTCGGAAGGCGTCGTCAACATCGGAGAAATCGTTTTGTACGACCCTGCTA 252
Query 237 AACAAGAGTTACTCAACCTTACGGACAAAGCAATTCCAGAAGAAATCGTCACAGCCAAAT 296
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 253 AACAAGAGTTACTCAACCTTACGGACAAACCAATTCCAGAAGAAATCGTGACAGCCAAAT 312
Query 297 GGATCGGAGCTTCCAAGGGATGGTCATTTTTCTCT-GACACACAAGACCGTTGTGTACTC 355
||||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||
Sbjct 313 GGATCGGAGCTTCCAAGGGATGGGCATTCTTCT-TGGACACACAAGACCGTTGTGTACTC 371
Query 356 ATCACCGACTCTTTGAACCCATGGGCTTGCAAATCAAACCCCAAGATCTTTACTCTGCCT 415
|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 372 ATCACCGACTCTTTGAACCCATGGGCATGCAAATCAAACCCCAAGCTCTTAACTCTGCCT 431
Query 416 CCACTTAATCCTCTGTTCTCTTGCCAAACTGATGTGATCTGGAACGTGGCAATGTCCTCT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CCACTTAATCCTCTGTTCTCTTGCCAAACTGATGTGATCTGGAACGTGGCAATGTCCTCT 491
Query 476 TGTCCTGATGACGATGAAGACTGGGTTGTTGGTATCAAGTCCTTGGGTGACCAGGTGAGT 535
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 492 TGTCCTGATGACGATGAAGACTGGGTTGTTGGCATCAAGTCCTTGGGTGACCAGGTGAGT 551
Query 536 TTCTGTAGACC-CAATCGTGACTTGCGTTGGACTAACATCCAAACTCCTTTTGACCACTT 594
|||||||| || | ||| ||||||||||||||||| ||||||| |||| |||||||||
Sbjct 552 TTCTGTAGGCCTCG-TCGAGACTTGCGTTGGACTAAGTTCCAAACCCCTTCTGACCACTT 610
Query 595 TCCAACCTCGAATCTGACGTATTCCAAGAGAGATCGGAAGTTCTACTTGCCTGGTCCTGG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TCCAACCTCGAATCTGACGTATTCCAAGAGAGATCGGAAGTTCTACTTGCCTGGTCCTGG 670
Query 655 AGGCCATCACTTGTTATCCTACAATCTTGACTTCGACAAAGCCGACCATCTTGAGTTCCA 714
|||||||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||
Sbjct 671 AGGCCATCACTTGTTATCCTACGATCTTGACTTCAACAAAGCCGACCAGCCAGAGTTCCA 730
Query 715 TGAGTTGCAGTTTCGCATCTTTCAAGAGTCGTTCAAGTATGACTCGGAGCTGTCGGAGAT 774
||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||| |
Sbjct 731 TGAGTTGCAGTTTCGCAACTTTCCAGAGTCGTTGAAGTATGACTCAGAGCTGTCGGAGCT 790
Query 775 GTTTCCTTCTTCTTGTAGAACAGAACACTTTGTGGAGTCACCCTCCGGAGATGAACGTTT 834
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 791 GTTTCCTTCTTCTTGTAGGACGGAACGCTTTGTGGAGTCACCCTCCGGAGATGAACGTTT 850
Query 835 CCTCGTCAAATGGTACGCCAAGAGCTGTTTGGCTTATTCGAGTAAAATCACCTACGAAAC 894
||| |||||||||||||||||| | |||||||||| |||||||||||||||||| |||||
Sbjct 851 CCTTGTCAAATGGTACGCCAAGGGTTGTTTGGCTTCTTCGAGTAAAATCACCTATGAAAC 910
Query 895 GCAGAGGTTCATGGTTTTTAGAGAGGAGGAGACTACGGAAGGAAGATTCATGTGTTACAC 954
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 911 GCAGAGGTTCATGGTATTTAGAGAGGAGGAGACTACGGAAGAAAGATTCATGTGTTACAC 970
Query 955 TGATGACATTGGAGATCTATGCATCTTTGTTTCAAAGAGTGAGGCTTTTTGCGTCCTGGC 1014
|||||||||||||||| | |||||||||||||||||||| |||||||||||||||| |||
Sbjct 971 TGATGACATTGGAGATTTGTGCATCTTTGTTTCAAAGAGCGAGGCTTTTTGCGTCCCGGC 1030
Query 1015 AAGCTCTTATCCTGGCCTTAAGCCAAACTCCATCTATTTTGTTGGCTTTGGCTTAGGTAC 1074
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 AAGCTCTTATCCTGGCCTTAAGCCAAACTCCATCTATTTTGTTGGCTTTGGCTTAGGTAT 1090
Query 1075 ATACGATCTTACCACCAGAGATGTCTCTACTTTTCGAGCTCCCAAAGGTGCACTGAATCA 1134
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1091 ATACGATCTTACCACCAGAAATGTCTCTATTTTTCGAGCTCCCAAAGGTGCACTGAATCA 1150
Query 1135 AATTGTGTCCCCTTACTGGTTTCCTCCAGCTTCTAGCTAGTGCTAGGATTGTATGGCTTT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 AATTGTGTCCCCTTACTGGTTTCCTCCAGCTTCTAGCTAGTGCTAGGATTGTATGGCTTT 1210
Query 1195 GTTTGCTTCGGTTTGACT-TTTCTCTCCACTTGCTAAGATCTAAT 1238
|||||||| ||||| ||| |||||||| |||||||||||||||||
Sbjct 1211 GTTTGCTTTGGTTTTACTCTTTCTCTCGACTTGCTAAGATCTAAT 1255
Score = 135 bits (73), Expect = 8e-31
Identities = 81/85 (95%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1238 TATTAGGAGTTTATTATGATCAATGGTATAATTCTTCTATAAATATATTTTACATACACA 1297
|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1283 TATTAGGAGTTTCTTATGATCAATTGAATAATTCTTCTATAAATATATTTTACATACACA 1342
Query 1298 ATTCACTTCATTTGTTTTTAACATG 1322
||||||||||||||||||| |||||
Sbjct 1343 ATTCACTTCATTTGTTTTTTACATG 1367
> AT1G30160.2 | Symbols: | Protein of unknown function (DUF295)
| chr1:10606251-10607784 FORWARD LENGTH=1273
Length=1273
Score = 143 bits (77), Expect = 5e-33
Identities = 417/572 (73%), Gaps = 59/572 (10%)
Strand=Plus/Plus
Query 51 ATTTTTGGGTTTCTTCTGCAATAATGTCTCGGTTTCTCTCCAAGCTCGCTCC-CGTTATT 109
|||||||||||||||||||||||||||||||| |||||||||||||| |||| | | |||
Sbjct 1 ATTTTTGGGTTTCTTCTGCAATAATGTCTCGGCTTCTCTCCAAGCTCTCTCCTC-TCATT 59
Query 110 CACAAGAG--G-AG---CGTTCGTTCGTTTTCATCCTCCACGACAGGCCCGTAT-TTGTC 162
||||| || | || | ||||||||||||||||||| ||||| ||||| | | || ||
Sbjct 60 CACAAAAGCAGTAGGAACATTCGTTCGTTTTCATCCTCAACGACCGGCCCATGTGTT-TC 118
Query 163 GCTTAGT-CTCAGT-GCAAAACCCTCGTC-GGAAGGCGTCCTCAACATCGGAGAAGTGGT 219
|| || | | || | ||||||| || ||| ||| ||| ||||| |||| |
Sbjct 119 TATTTGTAC-C-GTTGTGGAACCCTC-TCCGGACGGC------AACCTCGGACAAGTCCT 169
Query 220 TTTGTACGACCCTGCTAAACAAGA-GTTACTCAACCTTACGGACAAAGCA-ATTCCAGAA 277
|||| | || | | | | | || |||| ||| | |||||||| | || || ||
Sbjct 170 GTTGTTCAACA-TACCAGATATGAAGTTAGTCA-CAG--CGGACAAAATATATCCC-GAC 224
Query 278 GAAATCG-TCACAGCCAAAT-GGATCGGAGCTTCCAAGGGATGGTCATTTTTCTCTGACA 335
|| | | || ||| | | || | ||||||||| | |||||| | ||||||| || |
Sbjct 225 GAGCTTTATGAC-GCCCAGTTGG-TGGGAGCTTCCCATGGATGGGGACTTTTCTCCGATA 282
Query 336 CA-CAAGACCGTT-GTGTACTCATCACCGACTCTTTGAACCCATGGGCTTGCAAATCAAA 393
| ||| | || | | | ||| |||| ||||| ||||||||| | |||| ||| |||||
Sbjct 283 GAACAA-ATCGGTCG-GCACTTATCAGCGACTATTTGAACCCCTATGCTTCCAAGTCAAA 340
Query 394 CCCCAAGATCTTT-ACTCTGCCTCCACTTAATCCTCTGTTCTCTTGCCAAACTGATGT-G 451
|| ||||| || | ||| ||| ||| ||| ||| |||| ||||||| || || |
Sbjct 341 ACCAAAGATGATTCA-TCTACCTTTTTTTACTCCAATGTACTCTGGCCAAACCGAAGTCG 399
Query 452 ATCTGGAACGTGGCAATGTCCTCT--TG-TCCTGAT---GACGA------TGAAGACTGG 499
| || |||||||||||||||||| | ||||||| ||||| |||||| |||
Sbjct 400 -TGTGCAACGTGGCAATGTCCTCTCCTCCTCCTGATCAAGACGACGACCATGAAGATTGG 458
Query 500 GTTGTTGGTATCAAGTCCTTGGGT-GACCAGGTGAGTTTCTGTAGACC-CAATCGTGAC- 556
|| ||||| ||||||| ||||||| ||| || | || |||| || || | || ||||
Sbjct 459 GTAGTTGGCATCAAGTTCTTGGGTAGAC-AGCTTAGCCTCTGCAGGCCTCG-TCATGACC 516
Query 557 TTGCGTTGGACTAACATCCAAACTCCTTTTGA 588
|| |||||||||||||||| ||| ||||||||
Sbjct 517 TT-CGTTGGACTAACATCCTAACCCCTTTTGA 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65059906320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5