BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473238
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30200.2 | Symbols: | F-box family protein | chr1:10625029-... 2357 0.0
> AT1G30200.2 | Symbols: | F-box family protein | chr1:10625029-10627105
FORWARD LENGTH=1737
Length=1737
Score = 2357 bits (1276), Expect = 0.0
Identities = 1579/1720 (92%), Gaps = 42/1720 (2%)
Strand=Plus/Plus
Query 1 AAAAACAATCACGAGCCAACACCTCTTCATCTTCTCC-AATCAATCCATCAATGGAG--- 56
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAAAACAATCACGAGCCAACACCTCTTCATCTTCTCCAAATCAATCCATCAATGGAGTCT 60
Query 57 tct-cc-tc-ctctctc-t-ctcc-c---t-t--c-ctc--aaaattctctcAAAGCCAT 101
||| || || ||||||| | |||| | | | | ||| |||| || | |||||||||
Sbjct 61 TCTCCCATCTCTCTCTCTTCCTCCTCAGATCTCACACTCTGAAAAATCCCCCAAAGCCAT 120
Query 102 GTCTTATCTTCTTCGCTCCGATCCAGTTTCACGAATCCACCCAGAGCCTCAATCTCTAAC 161
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 121 GTCTTACCTTCTTCGCTCCGATCCGGTTTCACGAATCCACCCAGAACCTCAATCTCTAAC 180
Query 162 CTCTTTCGACCACTTCGATCTCCTCCCTGACTCTCTCCTCCTCTTAATCTTCGATAAAGT 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CTCTTTCGACCACTTCGATCTCCTCCCTGACTCTCTCCTCCTCTTAATCTTCGACAAAGT 240
Query 222 CGCCGACGTCAAAGATCTCGGCCGTTGCTGCATCGTATCCCGTAGATTTCACTCTCTTGT 281
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 241 CGCCGACGTCAAAGATCTCGGCCGTTGCTGCATCGTATCTCGTAGATTCCACTCTCTCGT 300
Query 282 CCCTTTCGTTGAGAACGTTCTCGTCCGTGTTGATTGTGTTATCTCCGATGATGATTCTTC 341
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 301 CCCTTTCGTTGAGAACGTTCTCGTCCGTGTTGATTGTGTTATCTCCGACGATGATTCCTC 360
Query 342 TTCCTCTGACGAGAATCGTCGATTCTCTCTCAACGCTGCTTCGATTTCTGACGCCGCCGG 401
|||||| |||||||||| |||||||||| | ||| |||| ||||| || ||||||| |||
Sbjct 361 TTCCTCCGACGAGAATCATCGATTCTCTTTAAACACTGCATCGATCTCAGACGCCGGCGG 420
Query 402 TGCTGGTGGTTCTTTCTCCGCCTTGTTTCGTCTCGTCTTCGCTCCAATTTTCAAACCGTT 461
||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 421 TGCTGGTGGCTCCTTCTCCGCCTTGTTCCGTCTCGTATTCGCTCCAATTTTCAAACCGTT 480
Query 462 TCAAGCGTTAGGGCAGTTTCTAGTACCGAAACGATCATCGTCATCGTCGTCGTTTGATGC 521
|||| |||||||||| |||||| |||||||||||| || | || | ||||| |||||
Sbjct 481 TCAAATGTTAGGGCAGATTCTAGGACCGAAACGATCGTC-T--TC-T--TCGTTCGATGC 534
Query 522 ATCGTTTTCAGCGATTAACGATGAAATCGGCGTTACGCATCACTCTCCGACTCAGGTATT 581
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 535 GTCGTTTTCAGCGATTAACGATGAGATCGGCGTAACGCATCACTCTCCGACTCAGGTATT 594
Query 582 GAAAAATTTCGGTGAGATTCGGTTTCTGAGAATCGAACTTCCGACTGGTGAATTAGGAAT 641
|||||| |||||||||||||||||| ||| |||||||||||| || || |||||||| ||
Sbjct 595 GAAAAACTTCGGTGAGATTCGGTTTTTGAAAATCGAACTTCCTACAGGAGAATTAGGTAT 654
Query 642 CGAGGATGGTATTTTGCTGAAATGGAGAGCTGATTTTGGATCTACGCTTGATAATTGTAT 701
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CGAGGATGGTATATTGTTGAAATGGAGAGCTGATTTTGGATCTACGCTTGATAATTGTAT 714
Query 702 GATTCTTGGTGCATCTTCGGTGATTCTA-TCGAAT-CAAGTCAAGAATC-TCGAGAATTC 758
||| ||||| |||||||||||||||| | |||||| || || ||||||| | ||||||||
Sbjct 715 GATACTTGGAGCATCTTCGGTGATTC-AGTCGAATTCA-GTGAAGAATCAT-GAGAATTC 771
Query 759 GGTTGATGAAGACAATGGTAACATACCTGAATCGTTTTACACTAATGGCGGACTTAAACT 818
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 772 GGTTGATGAAGACAATGGTAACATACCTGAGTCGTTTTACACTAATGGAGGGCTTAAGCT 831
Query 819 CCGTGTGGTTTGGACGATAAGCTCGTTAATCGCCGCCTCAGCTCGGCATTATCTTCTTCA 878
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 832 TCGTGTGGTTTGGACGATAAGCTCGTTAATCGCTGCGTCGGCTCGGCATTATCTTCTTCA 891
Query 879 GCCGATCATCACTGAGCACAAGACGTTAGATCGTTTGGTTCTCTCTGATGCTGATGGACA 938
||||| |||| |||||| ||| ||||||||||||||||| | |||||||||||||| ||
Sbjct 892 ACCGATTATCAATGAGCATAAGTCGTTAGATCGTTTGGTTTTATCTGATGCTGATGGGCA 951
Query 939 AGGTGTTTTGTGTATGAATAGAGAACAGCTTGAAGAGCTTAGAGTTACTCCTTTATCGGC 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 952 AGGTGTTTTGTGTATGAATAGAGAACAGCTTGAAGAGCTTAGAGTTACTCCTTTATCAGC 1011
Query 999 TTCTTCTGCTTCGAAGAGGACGCTTGTGCCTGCATTGAATATGAGGTTGTGGTATGCTCC 1058
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1012 TTCTTCTGCTTCGAAGAGGACGCTTGTGCCTGCGTTGAATATGAGGTTGTGGTATGCTCC 1071
Query 1059 GCAATTGGATTTACCTGATGGCACGGTGTTGAAAGGTGCGACATTGGTGGCTATTAGGCC 1118
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GGAATTGGATTTACCTGATGGGACGGTGTTGAAAGGTGCGACATTGGTGGCTATTAGGCC 1131
Query 1119 GAGTGAGTCGAAGAAAGAAGTTTGTGATGCTTCTTGGTTGTCGGATGCATTTGAGGAACC 1178
||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1132 GAGTGAGTCTAAGAAGGAAGTTTGTGATGCTTCTTGGTTGTCTGATGCTTTTGAGGAACC 1191
Query 1179 GTATGGGACTGCGGCGAAGATGTTGATCAAGAGGAGGACTTATTGTCTGGAGATGAACTC 1238
|| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1192 GTTTGGGACTGTGGCGAAGATGTTGATCAAGAGGAGGACTTATTGTTTGGAGATGAACTC 1251
Query 1239 GTTCTGATTTCGCAGTACGACCGGTTTCAGACATTTTGCAGATGGTGGGAGCAAACAAAT 1298
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GTTCTGATTTCGCATTATGACCGGTTTCAGACATTTTGCAGATGGTGGGAGCAAACAAAT 1311
Query 1299 CCACATATGTTGGAGAATGGAGGAAAGGGATCAGAGAGATCACATATGTCCTGAAGCCAA 1358
||||||||||||||||||| ||||||| || ||||||| ||||| |||||||||||||||
Sbjct 1312 CCACATATGTTGGAGAATGAAGGAAAGAGAACAGAGAGTTCACAAATGTCCTGAAGCCAA 1371
Query 1359 AAACCGCAAATCTCTCGACTTTTT--GACACATACTGCTTCGCCAGTCATGAGGAGTGCG 1416
|||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 1372 AAACCGCAAATCTCTCGACTTTTTTTGAGACATACTGCTTCGCCAGTCATGAGGCCTGCG 1431
Query 1417 TCGAAT----CTGCAGGCATGGAGGATGCCTAAGGGAGGTTCTCTGAAACCGAAGAAGAA 1472
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1432 TCGAATGAATCTGCAGGCATGGAGGATGCCGAAGGGAGGTTCTCTGAAACCGAAGAAGAA 1491
Query 1473 CACCATTGTACATACACTCTTGTAAAAGAAGTCTGCGAATGAGCAAGAGTATGTGTGTTG 1532
| |||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |
Sbjct 1492 CGCCATTGTACATACACTCTTGTAAAAGAAGTCTGCGAGTGAGGAAGAACATGTGTGT-G 1550
Query 1533 -TCTTTGTTTAAAAGAGACGCATATCA-GGATGGGAATCGTCGTAACATGTAAGGGATTA 1590
||| |||| ||||||| | ||||| | ||||| |||||||||||||| |||||||||||
Sbjct 1551 ATCTGTGTTAAAAAGAGGCACATATGAAGGATGTGAATCGTCGTAACACGTAAGGGATTA 1610
Query 1591 TGTTACAAAAGAGTCTGTAATGAATATTTTTAAGCTTTACTTCGACACTTTGATGTTCTG 1650
||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct 1611 TGTTACAAAAGAGTCTGTAAT-AATATGTATAAGCTTTATTTCGACACTTTGATGTTCTG 1669
Query 1651 TTTCTTGATACTTGGATACTCTGTTCTTGAAGCTAACTAC 1690
|| |||||||||||||||||||||||||||||||||||||
Sbjct 1670 TT-CTTGATACTTGGATACTCTGTTCTTGAAGCTAACTAC 1708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83533706880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5