BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473241
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30210.1 | Symbols: TCP24, ATTCP24 | TEOSINTE BRANCHED 1, cy... 2054 0.0
> AT1G30210.1 | Symbols: TCP24, ATTCP24 | TEOSINTE BRANCHED 1,
cycloidea, and PCF family 24 | chr1:10627185-10630538 REVERSE
LENGTH=1672
Length=1672
Score = 2054 bits (1112), Expect = 0.0
Identities = 1403/1534 (91%), Gaps = 57/1534 (4%)
Strand=Plus/Plus
Query 39 GATCTGTGGATCTTAACA---CTCTAATGCTTATAATGACGAGATCTAAGCATGAAAAGG 95
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 158 GATCTGTGGATCTTAACACTTCTCTAATGCTTATAATGACGAGATCTAAGCATGAGAAGG 217
Query 96 AAGAGAGAAGAATCTCATGACAAGAATCTGAAGAAAATTAAATTTG-TTTTC-TTTATCG 153
|||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 218 AAGAGATAAGAAGCTCATGACAAGAATCTGAAGAAAATTAAATTTGTTTTTCACTTATCG 277
Query 154 CCGCCATTGTTGTTCTACGGTGAGCTTGGACAGTTGACACCTGTAATCC-AAATT--TGA 210
|||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |
Sbjct 278 CCGCCATTGTTGTTCTACACTGAGCTTAGACAGTTGACACCTGTAATCCAAAATTCAAAA 337
Query 211 G-TAATGACTTTAATCTTCTTCTTCAGGCTTTTT-C---CTTATCATAGCTCTGATAAAG 265
| | || ||| || | | | ||||||||||| | ||||||||||||||||||||
Sbjct 338 GTTTATCACTGCAA-C--ATAC-TCAGGCTTTTTACTTAATTATCATAGCTCTGATAAAG 393
Query 266 TATGAGAGTAGTGTTTCAATGGAGGTTGACGAAGACATTGAGTTACAAAAGCATCAAG-- 323
||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 394 TATGAGAGTAGCGTTACAATGGAGGTTGACGAAGACATTGAGTTACAAAAACATCAAGAA 453
Query 324 -AACAAAGCAGAAAGCTACAAAGACTCTCAGACGACAACTCTGGAATTATAATGAGGAAT 382
||||||||||||||||||||||| ||||||| |||||| |||| | |||||||||||
Sbjct 454 CAACAAAGCAGAAAGCTACAAAGATTCTCAGAGGACAACACTGG-A--CTAATGAGGAAT 510
Query 383 TGGAACAATCCATCGTCTCGTATCATTAGGGTTTCACGAGCTTCTGGTGGCAAAGATCGA 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 511 TGGAACAATCCATCGTCTCGTATCATTAGGGTTTCACGAGCTTCTGGTGGCAAAGATAGA 570
Query 443 CATAGCAAAGTCTTAACTTCAAAAGGTTTAAGAGATCGAAGAATACGTCTCTCAGTTGCT 502
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 CATAGCAAAGTGTTAACATCAAAAGGTTTAAGAGATCGAAGAATACGTCTCTCAGTTGCT 630
Query 503 ACAGCAATCCAGTTCTATGATCTTCAAGATCGTCTTGGATTTGATCAACCAAGTAAAGCT 562
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 631 ACAGCAATCCAGTTCTATGATCTTCAAGATCGTCTTGGATTTGATCAGCCAAGTAAAGCT 690
Query 563 GTTGAATGGTTAATCAATGCAGCGTCTGATTCAATCACTGATCTTCCTTCGATTAACACA 622
||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 691 GTTGAATGGTTAATCAATGCAGCTTCTGATTCAATCACTGATCTTCCTTTGCTTAACACA 750
Query 623 AATTTTGATTATCTTGATGAGAACCAGAACCAGACCAAATCTGCTGGTAGTAGTGGAACA 682
||||||||| |||||||| |||| ||||| ||||||||||||||| ||||||||||||||
Sbjct 751 AATTTTGATCATCTTGATCAGAATCAGAATCAGACCAAATCTGCTTGTAGTAGTGGAACA 810
Query 683 TCTGAGAGTTCGTTGTTGTCTTTATCAAGGACagagattcgtgggaaagcaagagagaga 742
|||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 811 TCTGAGAGTTCGCTGTTGTCGTTATCAAGAACAGAGATTCGTGGGAAAGCAAGAGAGAGA 870
Query 743 gctagagaaagaacagctaaagaaagagataaagaTTTGCAAAATGCTCAAAGCTCATTC 802
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 871 GCTAGAGAAAGAACAGCTAAAGACAGAGATAAAGATTTGCAGAATGCTCATAGCTCATTC 930
Query 803 ACTCAGCTTCTCACCGGTGGTTTTGACCAACAACCGAGTAACCGGAATTGGACCGGTGGT 862
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 ACTCAGCTTCTCACTGGTGGTTTTGACCAACAACCGAGTAACCGGAATTGGACCGGTGGT 990
Query 863 TCTGATTG-TTTCAACCCGGTTCAGCTGCAGATACCAAACTCATCCTCTCAAGAACCAAT 921
|||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 991 TCTGATTGCTTT-AACCCGGTTCAGCTGCAAATACCAAACTCTTCCTCTCAAGAGCCAAT 1049
Query 922 GAATCAGAATAATCACCCATTCTCCTTTGTACCTGATTACAACTTTGGAATCTCTTCCTC 981
|||||| | || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1050 GAATCA-------C-CC-ATTCTCCTTTGTACCTGATTACAACTTTGGAATCTCTTCTTC 1100
Query 982 TTCTTCTGCCATTAATGGTGGTTACAGTAGTAGGGGGACCCTTCAGTCCAATTCACAATC 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 TTCTTCTGCCATTAATGGTGGTTACAGTAGTAGGGGGACCCTTCAGTCCAATTCACAATC 1160
Query 1042 TCTCTTTCTCAA---CAACAACAACATTACTCAAAGGTCATCGATTTCTTCATCTTCTTC 1098
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1161 TCTCTTTCTGAATAACAACAACAACATTACTCAAAGGTCATCGATTTCTTCGTCTTCTTC 1220
Query 1099 TTCCTCTTCTCCAATGGATAGTCAAAGCATTTCCTTTTTCATGGCTACACCTCCGCCTCT 1158
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1221 TTCCTCTTCTCCAATGGATAGTCAAAGCATTTCCTTTTTCATGGCTACACCTCCACCTCT 1280
Query 1159 TGACCACCATAACCACCAGCTTCCGGAGACTTTTGATGGCCGGTTATATCTTTATTACGG 1218
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1281 TGACCACCATAACCACCAGCTTCCGGAGACTTTTGATGGTCGGCTATATCTTTATTACGG 1340
Query 1219 CGAAGGAAACCGGAACTCCGATGATAAGGGAAAGGATAGGAGATAGGAAA--CAAAATGG 1276
|||||||||||||| ||| ||||| |||| |||||| ||||||||| ||| |||||||
Sbjct 1341 CGAAGGAAACCGGAGCTCTGATGACAAGGCAAAGGAAAGGAGATAGTAAAAACAAAATGC 1400
Query 1277 TTCCTTTCATCTCTCGCCAATCTTGGTTAGAGGAAGTGTAAGT-GAGGGAAGACGATGTT 1335
|||||||||||||||||||||||||| || |||||||||| | | ||||||||||||||
Sbjct 1401 TTCCTTTCATCTCTCGCCAATCTTGG--AGTGGAAGTGTAATTTGTGGGAAGACGATGTT 1458
Query 1336 TGCATAGCCCTGAGCATATATTTGGATCCTCCATTTCAATCATAAGCCTGATTGATTGCA 1395
|| |||||||||||| ||| || |||||||||| |||||||||||| | ||||||| |
Sbjct 1459 TGTGCAGCCCTGAGCATGTATATGAATCCTCCATTGCAATCATAAGCCAGGTTGATTGTA 1518
Query 1396 TGTTCAGACCGCGAGGAGTTGTTTTTGTTT--T--------T-----ATGTAATGAATCA 1440
||||||||||||||||| |||||||||||| | | |||||||||||||
Sbjct 1519 TGTTCAGACCGCGAGGAATTGTTTTTGTTTGATGAGAAACATGTGTTATGTAATGAATCA 1578
Query 1441 TATATATGTCTCTATGTGTGTTCATGTTCATTGTCAAAAACTTTGTCCGAAACTCGGACC 1500
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1579 TATATATGTCTCTATATGTGTTCATGTTCATTGTCATAAACTTTGTCCGAAACTCGGACC 1638
Query 1501 AATGTTTTCAGGTCATCCTCATTCTGTTGGCTGC 1534
||||||||||||||||||||||||||||||||||
Sbjct 1639 AATGTTTTCAGGTCATCCTCATTCTGTTGGCTGC 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75702421860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5