BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473244
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30230.2 | Symbols: | Glutathione S-transferase, C-terminal... 1351 0.0
AT2G18110.1 | Symbols: | Translation elongation factor EF1B/r... 1068 0.0
> AT1G30230.2 | Symbols: | Glutathione S-transferase, C-terminal-like;Translation
elongation factor EF1B/ribosomal protein
S6 | chr1:10638914-10640782 FORWARD LENGTH=1049
Length=1049
Score = 1351 bits (731), Expect = 0.0
Identities = 806/841 (96%), Gaps = 9/841 (1%)
Strand=Plus/Plus
Query 6 TCAGTGAAAAAGGTTCGAGCTTCAGAAA-TAATGGCAGCATTCCCAAACCTTAACTCTGA 64
||||||||||||||||||||||| |||| | |||||||||||||| ||||||||||||||
Sbjct 56 TCAGTGAAAAAGGTTCGAGCTTCGGAAACT-ATGGCAGCATTCCCTAACCTTAACTCTGA 114
Query 65 TTCTGGATTGAAGAAGCTCGATGAGCATCTTCTCACTCGCAGTTACATCACTGGGTACCA 124
| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 115 TGCTGGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGATACCA 174
Query 125 GGCTTCAAAGGACGATATCACTGTCTTTGCAGCTCTTGCAAAGCCCCCAACTTCACAGTA 184
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 175 GGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCCCCAACTTCACAGTA 234
Query 185 TGTGAACGCATCTCGTTGGTACAACCACATTGATGCCCTCTTGAGGATCTCTGGTGTCTC 244
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 235 TGTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCTGGTGTCTC 294
Query 245 TGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCCCCTATCACTGAGGAGGCTGTTGC 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 295 TGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTATCACTGAGGAGGCTGTTGC 354
Query 305 TACTCCCCCTGCAGCTGATTCTAAGGATGCTGCGGCTGATGAAGAAGATGATGATGATGT 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TACTCCCCCTGCAGCTGATTCTAAGGATGCTGCGGCTGATGAAGAAGATGATGATGATGT 414
Query 365 TGACCTTTTCGGAGAGGAAACCGAAGAGGAAAAGAAAGCTGCTGAAGAGAGAGCAGCTTC 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TGACCTTTTCGGAGAGGAGACCGAAGAGGAAAAGAAAGCTGCTGAAGAGAGAGCAGCTTC 474
Query 425 TGTCAAGGCATCTACAAAGAAGAAGGAATCTGGAAAGTCCTCAGTTTTGATTGATATCAA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGTCAAGGCATCTACAAAGAAGAAGGAATCTGGAAAGTCCTCAGTTTTGATTGATATCAA 534
Query 485 GCCATGGGATGATGAGACTGACATGAAGAAG-TTAGAGGAAGCAGTGA-GATCCATTCAG 542
|| ||||||||||||||||||||||||||| || |||||||| |||| | |||||||||
Sbjct 535 ACCGTGGGATGATGAGACTGACATGAAGAAGCTT-GAGGAAGCTGTGAAG-TCCATTCAG 592
Query 543 ATGGAAGGTTTGTTTTGGGGAGCATCAAAGCTTGTCCCAGTTGGTTATGGTATCAAGAAG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGGAAGGTTTGTTTTGGGGAGCATCAAAGCTTGTCCCAGTTGGTTATGGTATCAAGAAG 652
Query 603 TTGCAGATTATGTGCACCATTGTTGATGACCTTGTCTCTATTGACACCATGATCGAAGAG 662
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 653 TTGCAGATTTTGTGCACCATTGTTGACGACCTTGTCTCTATTGACACCATGATCGAAGAG 712
Query 663 CAACTCACAGTTGAACCAATCAATGAATACGTCCAGAGCTGTGACATTGTTGCCTTCAAC 722
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 713 CAACTCACTGTTGAACCGATCAATGAATATGTCCAGAGCTGTGACATTGTTGCCTTCAAC 772
Query 723 AAGATATGTAGGATGGAGAATGCTTCAAGGATTGTCTGTGTTCTTGTTGTCTGGTTCTTC 782
|||||||||| ||||||||| |||||||||| ||||||||||| ||| ||||||||||||
Sbjct 773 AAGATATGTAAGATGGAGAAAGCTTCAAGGAATGTCTGTGTTCATGTGGTCTGGTTCTTC 832
Query 783 TTCTTCT---ATATTCAGTTTCCCAAGTTTTTGTAGACTGTTGTTTTGACTCTGCTATGG 839
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 833 TTCTTCTTCTATATTCAGTTTCCCAAGTTTTTGTAGACTGTTGTTTTGACTCTGTTATGG 892
Query 840 C 840
|
Sbjct 893 C 893
> AT2G18110.1 | Symbols: | Translation elongation factor EF1B/ribosomal
protein S6 family protein | chr2:7872251-7873912
FORWARD LENGTH=978
Length=978
Score = 1068 bits (578), Expect = 0.0
Identities = 727/798 (91%), Gaps = 14/798 (2%)
Strand=Plus/Plus
Query 7 CAGTGAAAAAGGTTCGAGCTTCAGAAATAATGGCAGCATTCCCAAACCTTAACTCTGATT 66
||||||||||| ||||||||| ||||| |||||| || ||||| ||||| ||||||| |
Sbjct 55 CAGTGAAAAAGTTTCGAGCTTTAGAAACAATGGCGGCTTTCCCCAACCTCAACTCTGGCT 114
Query 67 CTGGATTGAAGAAGCTCGATGAGCATCTTCTCACTCGCAGTTACATCACTGGGTACCAGG 126
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 115 CCGGATTGAAGAAGCTCGATGAGCATCTTCTCACTCGCAGTTACATCACTGGGTACCAAG 174
Query 127 CTTCAAAGGACGATATCACTGTCTTTGCAGCTCTTGCAAAGCCCCCAACTTCACAGTATG 186
|||||||||| ||||||||||| ||| |||||||| ||||||||||||||||| ||| ||
Sbjct 175 CTTCAAAGGATGATATCACTGTGTTTACAGCTCTTTCAAAGCCCCCAACTTCAGAGTTTG 234
Query 187 TGAACGCATCTCGTTGGTACAACCACATTGATGCCCTCTTGAGGATCTCTGGTGTCTCTG 246
| || | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 235 TCAATGTATCTCGTTGGTTCAACCACATCGATGCCCTCTTGAGGATCTCTGGTGTCTCTG 294
Query 247 CTGAAGGAAGCGGTGTCATTGTTGA-GGGATCAGCCCCTATCACTGAGGAGGCTGTTGCT 305
|||||||||| |||||||||||||| ||| ||| | |||||||| || ||||||||||||
Sbjct 295 CTGAAGGAAGTGGTGTCATTGTTGAAGGG-TCATCACCTATCACAGAAGAGGCTGTTGCT 353
Query 306 ACTCCCCCTGCAGCTGATTCTAAGGATGCTGCGGCTGATGAAGAAGATGATGATGATGTT 365
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 354 ACTCCCCCTGCAGCTGATTCTAAGGATACTGCTGCTGAAGAAGAAGATGATGATGATGTT 413
Query 366 GACCTTTTCGGAGAGGAAACCGAAGAGGAAAAGAAAGCTGCTGAAGAGAGAGCAGCTTCT 425
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GACCTTTTCGGGGAGGAGACCGAAGAGGAAAAGAAAGCTGCTGAAGAGAGAGCAGCTTCT 473
Query 426 GTCAAGGCATCTACAAAGAAGAAGGAATCTGGAAAGTCCTCAGTTTTGATTGATATCAAG 485
|| |||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct 474 GTGAAGGCATCTACAAAGAAGAAAGAATCCGGAAAGTCATCAGTTTTGATGGATATCAAG 533
Query 486 CCATGGGATGATGAGACTGACATGAAGAAGTTAGAGGAAGCAGTGAGATCCATTCAGATG 545
|| |||||||||||||| |||||||||||| |||||||||| || |||||||||||||||
Sbjct 534 CCGTGGGATGATGAGACGGACATGAAGAAGCTAGAGGAAGCTGTAAGATCCATTCAGATG 593
Query 546 GAAGGTTTGTTTTGGGGAGCATCAAAGCTTGT-CCCAGTTGGTTATGGTATCAAGAAGTT 604
||||| |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 594 GAAGGATTGTTTTGGGGAGCATCAAAGCTTGTACCC-GTTGGTTACGGTATCAAGAAGTT 652
Query 605 GCAGATTATGTGCACCATTGTTGATGACCTTGTCTCTATTGACACCATGATCGAAGAGCA 664
||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 653 GCACATCATGTGCACCATTGTTGATGACCTTGTATCTATCGACACCATGATCGAAGAGCA 712
Query 665 ACTCACAGTTGAACCAATCAATGAATACGTCCAGAGCTGTGACATTGTTGCCTTCAACAA 724
|||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 713 ACTCACTGTTGAACCGATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAA 772
Query 725 GATATGTAGGATGGAGAAT-GCTTCAAGGATTGT-CTGTGTTCTTGTTGTCTGGTTCTTC 782
|||||| |||||||||||| |||| ||||| | |||| || | ||||| || || |||
Sbjct 773 GATATG-AGGATGGAGAATAGCTTGAAGGAA-GAACTGT-TTAT-GTTGT-TG-TT-TTC 825
Query 783 TTCTTCTATATTCAGTTT 800
|||| |||||| ||||||
Sbjct 826 TTCT-CTATATCCAGTTT 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5