BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473247
Length=2728
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30240.2 | Symbols: | unknown protein; Has 169 Blast hits t... 4130 0.0
> AT1G30240.2 | Symbols: | unknown protein; Has 169 Blast hits
to 168 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa
- 49; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes
- 6 (source: NCBI BLink). | chr1:10641099-10645935 REVERSE
LENGTH=2723
Length=2723
Score = 4130 bits (2236), Expect = 0.0
Identities = 2377/2443 (97%), Gaps = 17/2443 (1%)
Strand=Plus/Plus
Query 1 GTCTGTCCGCCACAGTTCTAAAACCCTAATTTCGCAAAAAACCCTAA--T---------- 48
|||||||||||||| ||||||||||||||| || ||||||||||||| |
Sbjct 1 GTCTGTCCGCCACAATTCTAAAACCCTAATCTCACAAAAAACCCTAATCTCACAAAAACC 60
Query 49 CT-CTCTCTTCATCCG-CATCTCTCTTTCAC-GACTTCAATGGCGTCTTTTGAGCGTTTT 105
|| |||||||||| || |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 61 CTCCTCTCTTCAT-CGACATCTCTCTTTCACTG-CTTCAATGGCGTCTTTTGAGCGTTTT 118
Query 106 GACGACATGTGTGACCTGAGATTGAAACCTAAGATTCTCCGAAACCTTCTGTCCGAATAT 165
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 119 GACGACATGTGTGACCTGAGATTGAAACCTAAGATTCTCCGAAACCTTCTCTCCGAATAT 178
Query 166 GTTCCCAACGAGAAGCAGCCTCTCACCAACTTTCTATCACTCTCCAAGGTTGTTTCAACC 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 179 GTTCCCAACGAGAAGCAGCCTCTCACCAACTTTCTATCACTCTCCAAGGTTGTATCAACC 238
Query 226 ATCTCCACACACAAGCTCTTATCTGAGTCTCCTCCAGCTTCAATTGACCAGAAGCTTCAT 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATCTCCACACACAAGCTCTTATCTGAGTCTCCTCCAGCTTCAATTGACCAGAAGCTTCAT 298
Query 286 GCTAATTCGAAATCAGCCGTTGATGATTGGGTTGCTAGATTATTAGCTTTGATTTCTTCT 345
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 GCTAAATCGAAATCAGCCGTTGATGATTGGGTTGCTAGATTATCAGCTTTGATTTCTTCT 358
Query 346 GATATGCCAGATAAAAGTTGGGTGGGTATTTGTTTGATTGGAGTAACATGTCAAGAATGT 405
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GATATGCCGGATAAAAGCTGGGTGGGTATTTGTTTGATTGGAGTAACATGTCAAGAATGT 418
Query 406 AGCTCAGATCGTTTCTTTAGGTCATACTCTCTTTGGTTTTACAGTTTATTATCACATCTT 465
||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 419 AGCTCAGATCGTTTCTTTAAGTCATACTCTGTTTGGTTTAACAGTTTATTATCACATCTT 478
Query 466 AAGAATCCAGCAAGTTCTAGAATTGTCCGAGTGGCTTCATGTACCTCAATCTCTGATCTC 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGAATCCAGCAAGTTCTAGAATTGTCCGAGTGGCTTCATGTACCTCAATCTCTGATCTA 538
Query 526 CTTACAAGGCTGTCTAGATTTTCAAATACGAAGAAAGATGCAGTTTCACACGCTTCAAAA 585
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 539 CTTACAAGGCTGTCTAGATTTTCGAATACGAAGAAAGATGCAGTTTCACACGCTTCGAAA 598
Query 586 CTAATCCTGCCTATCATTAAATTATTGGATGAAGATTCTTCAGAAGCACTATTGGAAGGC 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTAATCCTGCCTATCATTAAATTATTGGATGAAGATTCTTCAGAAGCACTATTGGAAGGC 658
Query 646 ATTGTCCATCTGCTAAGTACAATTGTACTCTTGTTTCCTGCTGCCTTCCACAGTAATTAT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATTGTCCATCTGCTAAGTACAATTGTACTCTTGTTTCCTGCTGCCTTCCACAGTAATTAT 718
Query 706 GACAAGATTGAAGCCGCTATTGCCTCCAAAATATTTTCTGCGAAAACCAGTTCTAATATG 765
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 GACAAGATTGAAGCCGCTATTGCCTCCAAAATATTTTCGGCGAAAACCAGTTCTAATATG 778
Query 766 TTAAAGAAATTTGCCCACTTTCTAGCATTGCTCCCCAAAGCTAAAGGTGACGAGGGCACC 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTAAAGAAATTTGCCCACTTTCTAGCATTGCTCCCCAAAGCTAAAGGTGACGAGGGCACC 838
Query 826 TGGTCCTTGATGATGCAAAAGCTGCTGATATCTATAAACGTACATTTAAATAATTTTTTC 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGGTCCTTGATGATGCAAAAGCTGCTGATATCTATAAACGTACATTTAAATAATTTTTTC 898
Query 886 CAAGGTCTAGAAGAAGAAACAAAAGGAACAAAAGCAATCCAACGATTGACCCCTCCTGGA 945
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 899 CAAGGTCTAGAAGAAGAAACAAAAGGAACAAAAGCAATCCAACGATTGACTCCTCCTGGA 958
Query 946 AAAGACTCTCCTTTGCCCTTGGGAGGTCAAAATGGGGGTTTGGATGATGCATCATGGAAC 1005
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAAGACTCTCCTTTGCCCCTCGGAGGTCAAAATGGGGGTTTGGATGATGCATCATGGAAC 1018
Query 1006 TCTGAACAATTGATTGTATCCAGAGTTTCTGCACTTATGTTCTGCACCTCAACGATGTTA 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCTGAACAATTGATTGTATCCAGAGTTTCTGCACTTATGTTCTGCACCTCAACGATGTTA 1078
Query 1066 ACTACCTCGTACAAATCCAAGATTAATATTCCAGTTGGCTCATTATTATCCCTTGTTGAA 1125
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1079 ACTACCTCGTACAAATCCAAGATTAATATTCCAGTTGGCTCATTGTTATCCCTTGTTGAG 1138
Query 1126 CGAGTGCTGTTGGTGAATGGCTCTCTACCTCGAGCCATGTCACCCTTCATGACAGGGATC 1185
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CGAGTGCTGTTGGTGAACGGCTCTCTACCTCGAGCCATGTCACCCTTCATGACAGGGATC 1198
Query 1186 CAACAAGAATTGGTTTGTGCAGAACTTCCAGCTTTGCATTCGTCTGCTCTGGAACTCTTG 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAACAAGAATTGGTTTGTGCAGAACTTCCAGCTTTGCATTCGTCTGCTCTGGAACTCTTG 1258
Query 1246 TGCGCTACTTTAAAGAGTATCCGCAGCCAACTTTTACCATATGCTGCATCTGTGGTGAGA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGCGCTACTTTAAAGAGTATCCGCAGCCAACTTTTACCATATGCTGCATCTGTGGTGAGA 1318
Query 1306 CTTGTTAGTAGCTACTTCAGGAAATGTTCATTGCCAGAATTGAGGGTAAAGCTCTACTCA 1365
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1319 CTTGTTAGTAGCTACTTCAGGAAATGTTCATTGCCAGAATTGAGGATAAAGCTCTACTCA 1378
Query 1366 ATCACTACAACCTTACTCAAATCCATGGGTATAGGAATGGCAATGCAACTGGCACAGGAA 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ATCACTACAACCTTACTCAAATCCATGGGTATAGGAATGGCAATGCAACTGGCACAGGAA 1438
Query 1426 GTTGTCATTAATGCCTCTGTGGATCTAGACCAGACAAGTTTAGAGGCATTTGATGTGGCA 1485
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1439 GTTGTCATTAATGCCTCTGTGGATCTAGACCAGACAAGTTTAGAAGCATTTGATGTGGCA 1498
Query 1486 TCTAGCAAAAACCCGTCGCTTACTAGCGGAGCTCTTCTTCAGGCTTGCAGTaaaaaaaGG 1545
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1499 TCTAGCAAAAACCCCTCGCTTACTAATGGAGCTCTTCTTCAGGCTTGCAGTAAAAAAAGG 1558
Query 1546 AAGCATTCAGGAGTTGAGGCAGAAAATTCTGTTTTTGAAGTGAGAATCCCTCACAATCAC 1605
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1559 AAGCATTCAGGAGTCGAGGCAGAAAATTCTGTTTTTGAATTGAGAATCCCTCACAATCAC 1618
Query 1606 TCGAGAAGCCCGATTTCATTGAAGATAGCATCTCTTGAGGCTCTGGAAACTCTTCTCACC 1665
| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1619 TTGAGAAGCCCGATTTCATTGAAAATAGCATCTCTTGAGGCACTGGAAACACTTCTCACC 1678
Query 1666 ATTGGTGGTGCATTGGGATCGGATAGCTGGAGAGAGTCTGTTGATAATCTTCTTCTGACC 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 ATTGGTGGTGCATTGGGATCGGATAGCTGGAGAGAGTCTGTTGATAATCTTCTTCTGACC 1738
Query 1726 ACTGCAACAAATGCCTGTGAAGGGAGATGGGCCAATGCTGAAACCTATCATTGTTTACCC 1785
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1739 ACTGCAACAAATGCCTGTGAAGGGAGATGGGCCAATGCTGAAACCTACCATTGTTTACCC 1798
Query 1786 AATAAGTCTACGACGGATCTGGTTGAGTTTCAGCTTGCAGCACTCCGTGCCTTTTCGGCA 1845
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1799 AATAAGTCTACGACGGATCTAGTTGAGTTTCAGCTTGCAGCACTCCGTGCCTTTTCGGCA 1858
Query 1846 TCTCTCGTTTCTCCATCACGAGTACGCCCTGCATTTTTAGCTGAAGGACTTGAGCTTTTC 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TCTCTCGTTTCTCCATCACGAGTACGCCCTGCATTTTTAGCTGAAGGACTTGAGCTTTTC 1918
Query 1906 CGAACAGGTAAACTTCAGGCAGGAATGAAAGTTGCTGGGTTCTGTGCTCACGCTCTCATG 1965
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1919 AGAACAGGTAAACTTCAGGCAGGAATGAAAGTTGCTGGATTCTGTGCTCACGCTCTCATG 1978
Query 1966 TCCCTTGAAGTTGTTATACATCCGAGGGCACTTCCACTCGATGGCCTCCCGACACTTAGC 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 TCCCTTGAAGTTGTTATACATCCGAGGGCACTTCCACTCGATGGCCTCCCGACACTTAGC 2038
Query 2026 AACCGATTTCCAGAGAGCAATTCTTTTGGCAGCCAAAAACACAACACACCTAATCTGAAT 2085
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 2039 AACCGATTTCCAGAGAGCAATTCTTTTGGCAGCGAAAAACACAACACACCTAATCTTAAT 2098
Query 2086 AAGTTGAATGTTATTGCTCATGATGGTGATGATCTAGGCAATAGATGGCTGGCAAAGGCG 2145
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2099 AAGTTGAATGTTATTGCTCATGATGGTGATGATCTAGGCAATAGATGGCAGGCAAAGGCG 2158
Query 2146 GATGTTCCTTCTAACAATGCGATTCAGAGAACCTTTGACTCGACTTTGCCTCTCCAAGAG 2205
||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 2159 GATGTTCCTTCTAACAATGCGATTCAGAGAACCTTAGACACGACTTTACCTCTCCAAGAG 2218
Query 2206 AGCAAAAGATTGAAAGTTGGGAATGATTTAGCTACTGTCGTGTCTTTGAGTGTCCAAGAT 2265
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 AGCAACAGATTGAAAGTTGGGAATGATTTAGCTACTGTCGTGTCTTTGAGTGTCCAAGAT 2278
Query 2266 CATACAGATATAGTTGCATCAGAGAATGTTCAACAAGCTGATGTGCCTGAGAAGGTTCCT 2325
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2279 CATACAGATATAGTTGCATCAGAGAATGGTCAACAAGCTGATGTGCCTGAGAAGGTTCCT 2338
Query 2326 GAGGAATCTCTAGGACCGGTTTCAGACAAAGATGTTACGGCTCCCAAAGATGGGTATCAA 2385
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2339 GAGGAATCTCTAGGACCGGTTACAGACAAAGATGTTACGGCTCCCAAAGATGGGTATGAA 2398
Query 2386 GAAGTGGTGAGTGGGACTCAAGAGGGAAAGGATTTAGCGATTA 2428
||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2399 GAAGTGGTGAGTGGGACTCAAGAGGGAGAGGATTTAGCGGTTA 2441
Score = 446 bits (241), Expect = 7e-124
Identities = 283/301 (94%), Gaps = 11/301 (4%)
Strand=Plus/Plus
Query 2428 AGTGGGACTCAAGAGGGAGAGGATTTAGCGTTTAAAGATAGTCTGATGGAGGAAGCATCA 2487
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2408 AGTGGGACTCAAGAGGGAGAGGATTTAGCGGTTAAAGACAGTCTGATGGAGGAAGCATCA 2467
Query 2488 ATTGGTAAGAAGATAGAGTCCTTAGGGGAATCTGATGAtgattctattcctagtcttcag 2547
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2468 ATTGGTAAGAAGATAGAGTCCTTAGGGGAATCTGATGATGATCCTATTCCTAGTCTTCAG 2527
Query 2548 gaaggtgattttctctcttcttcttctgattctgattctgatATTGAATCGTAATGCAAG 2607
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2528 GAAGGTGATTTTCTCTCCTCTTCTTCTGATTCTGATTCTGATATTGAATCGTAATGCAAG 2587
Query 2608 ACAAAAGAGTTCACAACTCTGTCTGAGAAGAATTTTGTTTCTTTAAGTTAAAGTTTTGAC 2667
||||||||||||||||| | |||| ||||||||||||||||| |||||||||||||||
Sbjct 2588 ACAAAAGAGTTCACAAC-C-GTCTTAGAAGAATTTTGTTTCT--AAGTTAAAGTTTTGA- 2642
Query 2668 TTTTGATCATATGATTATACCTCTTTTTTACTTGTAAGATGTTTCAAATTTGTGAGAGTT 2727
|| | | || || | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2643 TTAT-A-CA-AT--T-ATACCTCTTTTTTACTTGTAAGATGTTTCAAATATGTGAGAGTT 2696
Query 2728 T 2728
|
Sbjct 2697 T 2697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135500913043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5