BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473251
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30280.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 2333 0.0
AT1G30282.1 | Symbols: | other RNA | chr1:10663332-10664763 FO... 725 0.0
> AT1G30280.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr1:10662663-10664668 REVERSE LENGTH=1654
Length=1654
Score = 2333 bits (1263), Expect = 0.0
Identities = 1539/1665 (92%), Gaps = 48/1665 (3%)
Strand=Plus/Plus
Query 1 ACACTCTCTTTACTTCGTCG-TCtttttttCTTCAGAATTTCCGGTGACCGGAGCCaaaa 59
|||||||||||||||||||| | |||||||||| ||| |||||||||| |||||||
Sbjct 17 ACACTCTCTTTACTTCGTCGCTTTTTTTTTCTTTAGACTTTCCGGTGATCGGAGCC---- 72
Query 60 aaaaaaagaaaagaaaaaCATCACCGGGGAAATGGACGAATCGTGGCGTATGAAGATGGG 119
|||||||| |||| | ||||||| |||||||||||||| |||||||||||||||||
Sbjct 73 AAAAAAAG----GAAAGA-TTCACCGGCGAAATGGACGAATCTTGGCGTATGAAGATGGG 127
Query 120 TTTAAGCGTTGATCCATTCTTCTCCATTGCTCGTAAATCCATGGATGCTCGAATCGACGC 179
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 128 TTTAAGCGTTGATCCATTCTTCTCCATTGCTCGTAAATCAATGGATGCTCGTATCGACGC 187
Query 180 GGAAGACTTCGCCGATGTTTTCGGCGGTCCGCCGCGAACTC-TCCTCACCCGAAAATTTT 238
|||||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 188 GGAAGACTTCGCTGATGTTTTCGGCGGTCCGCCGCGAA-GCGTTCTCACCCGAAAATTTT 246
Query 239 CCGGCGACTTCTCTCGTTCCGACTGTTTCTACGACGAGGTTTTCCGGCCTCCGGGGAA-- 296
|||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||
Sbjct 247 CCGGCGACTTCTCTCGTTCCGACTGTTTCTACGACGAGATTTTTCAGCCTCC-GGGAACT 305
Query 297 TT-T-CTCCGGGGGCTCTCTTCCATCTTCTAAATCTCACGGAAGAAATTTACCATCGTTC 354
|| | |||||| ||||||||| | ||||||||||||||||||||||| ||||| | |||
Sbjct 306 TTCTCCTCCGGCGGCTCTCTTGCGTCTTCTAAATCTCACGGAAGAAACTTACCGGCATTC 365
Query 355 AGAATTCCGTCCGGCGGAGAAGGATTTTACGACGGCGTGTTTGGTGGTCGCGGCGGGTCG 414
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 366 AGAATTCCGTCCGGCGGGGAAGGATTTTACGACGGCGTGTTTGGTGGTCGCGGCGGTTCT 425
Query 415 GCGAAAGAGGGATCGAAAATACAGAGCTCGATGGCGAAATCGAGATCAAATTCATCGTCG 474
||||| || |||||||||| ||||||||||||| ||||| | ||||| ||||||||||||
Sbjct 426 GCGAAGGAAGGATCGAAAAAACAGAGCTCGATGACGAAACCAAGATCGAATTCATCGTCG 485
Query 475 ATGCTTTCTTCCGAGGAGGTCAGTCCTCACAACCCTCCACCAGCAGCAGCTTCCGGCGAC 534
||||| ||||||||||||| |||||||||| | ||||||||||| |||||||||||||||
Sbjct 486 ATGCTCTCTTCCGAGGAGGCCAGTCCTCACTATCCTCCACCAGCGGCAGCTTCCGGCGAC 545
Query 535 GACTCCGGATTTTCTTCTTTCACATCTAGACTCAGACCGTTAAACGTCCCGTCAAGAAGT 594
||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 546 GACTCCGGATTCTCTTCTTTCACTTCTAGACTTAGACCGTTAAACGTCCCGTCGAGAAGT 605
Query 595 CATAAACGAGAGCCAAAGAAACAGAGTTTCTCGGCGTTTCCAACAGCCAAAGATTCATTT 654
|||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 606 CATAAACGAGAGTCAAAGAAACAGAGTTTCTCGGCGGTTCCAAAAGCAAAAGATTCATTT 665
Query 655 TCCGGCCAAAATAACACACCGGAAAAAGCTGATTTTTACTACAAAAAACCACATTTCGGC 714
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 666 TCCGGCCAAAATAACACACCGGAAAAAGCTGATTTCTACTACAAAAAAACACATTTCGGC 725
Query 715 GGATCAAGAAGAGCCTCGCCAGAAACCATAAGCTTGGATCCAAATTCCTTCAGAAGAATG 774
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 726 GGATCAAGAAGAGCCTCGCCAGAAACCATAAGCTTGGATCCGAATTCCTTCAGAAGAATG 785
Query 775 GATGATTACGGACCAAGCTCTCCTGCATCTTCCCCTGTTTCTTCCTTCATCTGCGAAGAA 834
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 786 GATGACTACGGACCAAGCTCCCCTGCATCTTCCCCTGTTTCTTCCTTCATCTGCGAAGAA 845
Query 835 GAAGACGACAACACTCATGCAAAACAGAGAACCACCAGAGACTGTAAAGTCGAAGACGTA 894
|||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |
Sbjct 846 GAAGACGACAACACTCATGCTAAACAGAGAACAAACAGAGACTGTAAAGTCGAAGA-G-- 902
Query 895 GTAGTCGTagaagatgaagaagac---gaagaagaagagaTGAGCTCTTACGTAATTGAG 951
||||| |||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 903 GTAGTAGTAGAAGATGAAGAAGACGAAGAAGAAGAAGAGATGAGCTCTTACGTCATCGAG 962
Query 952 ATAAACTCAGATCGATTCGATCGTTACAGAGAAGAaggaggaggaggaggaggaggaAAT 1011
|||||||||||||||||||| || |||||||||| | ||||||||||||||||||||||
Sbjct 963 ATAAACTCAGATCGATTCGACCGATACAGAGAAG-A--AGGAGGAGGAGGAGGAGGAAAT 1019
Query 1012 TCAGATTCAAACGACATGGATGAAGCAATAGCTTGGGCAAAAGAGAGATCTCAACGACCA 1071
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct 1020 TCAGATTCAAACGACATGGATGAAGCAATAGCTTGGGCTAAAGAAAGATCTCAAAGACCA 1079
Query 1072 GAAGCAAAACAAATagaagaagacgtaatcgattcaagaagaagtgaagaagaacccaaa 1131
|||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1080 GAAGCAAAGCAAACAGAAGAAGATGTAATCGATTCGAGAAGAAGTGAAGAAGAACCCAAA 1139
Query 1132 tcagaagaagagatggagatggagatgaaagatgaagagataagaaTCTGGTTAACCGGA 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCAGAAGAAGAGATGGAGATGGAGATGAAAGATGAAGAGATAAGAATCTGGTTAACCGGA 1199
Query 1192 AAAGAGACAAACATTAGACTTCTCCTCTCAACTTTACATCATGTT-TTGTGGTCAAATAG 1250
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1200 AAAGAGACAAACATTAGACTTCTCCTCTCAACTTTACATCATGTTCTT-TGGTCAAATAG 1258
Query 1251 CAATTGGCATTCAATTCCTTTAGCAAATCTTCGAGATGGATCACAAGTGAAGAAAGCTTA 1310
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CAATTGGGATTCGATTCCTTTAGCAAATCTTCGAGATGGATCACAAGTGAAGAAAGCTTA 1318
Query 1311 TCAAAAAGCTCGGCTTTGTTTACATCCAGATAAGCTACAACAAAGAGGAGGAACTTCACC 1370
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TCAAAGAGCTCGGCTTTGTTTACATCCAGATAAGCTACAACAAAGAGGAGGAACTTCACC 1378
Query 1371 GATTCAAAAATCTGTCGCGAGTAGAGTTTTCGCCATTCTTCAGGAAGCGTGGGCTGTGTA 1430
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1379 GATTCAAAAATCTGTCGCGAGTAGAGTTTTCGCCATTCTTCAGGAAGCATGGGCTGTGTA 1438
Query 1431 CGTAACAAATGAAGGTCTCTCGAGCTAAACCGGAATCCGCAAACAATATTCTTTTGGTTT 1490
||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1439 CGTAACAAATGAAGGACTCTCGAGCTAAACCGGAATCCGCAAACTACATTCTTTTGGTTT 1498
Query 1491 ATATTAAACCGGAGGTGTTCAGAATCGGTTTATAATAATGTAAGAAGAACAAGAGCAAAG 1550
|||||||||| || |||||||||||||||| |||||||||||| ||||||||||
Sbjct 1499 ATATTAAACCAGA-------AGAATCGGTTTATAATCATGTAAGAAGAATAAGAGCAAAG 1551
Query 1551 TTATaaaaaaaaTGttt-ttt-tttttttGTAAAAG--T------CATATGAACATTCCC 1600
||| || |||| |||| ||| |||||||||||||| | |||||||||||||||
Sbjct 1552 TTA-AAGGAAAA-GTTTGTTTGTTTTTTTGTAAAAGACTAAAAGTCATATGAACATTCCC 1609
Query 1601 ATGTGT-GCCTTTGTATATTCCATTGTCAATGTTCTTATATACAG 1644
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1610 ATGTGTTGCCTTTGTATATTCCATTGTCAATGTTCTTATATACAG 1654
> AT1G30282.1 | Symbols: | other RNA | chr1:10663332-10664763
FORWARD LENGTH=1314
Length=1314
Score = 725 bits (392), Expect = 0.0
Identities = 516/573 (90%), Gaps = 19/573 (3%)
Strand=Plus/Minus
Query 1 ACACTCTCTTTACTTCGTCG-TCtttttttCTTCAGAATTTCCGGTGACCGGAGCCaaaa 59
|||||||||||||||||||| | |||||||||| ||| |||||||||| |||||||
Sbjct 1203 ACACTCTCTTTACTTCGTCGCTTTTTTTTTCTTTAGACTTTCCGGTGATCGGAGCC---- 1148
Query 60 aaaaaaagaaaagaaaaaCATCACCGGGGAAATGGACGAATCGTGGCGTATGAAGATGGG 119
|||||||| |||| | ||||||| |||||||||||||| |||||||||||||||||
Sbjct 1147 AAAAAAAG----GAAAGA-TTCACCGGCGAAATGGACGAATCTTGGCGTATGAAGATGGG 1093
Query 120 TTTAAGCGTTGATCCATTCTTCTCCATTGCTCGTAAATCCATGGATGCTCGAATCGACGC 179
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1092 TTTAAGCGTTGATCCATTCTTCTCCATTGCTCGTAAATCAATGGATGCTCGTATCGACGC 1033
Query 180 GGAAGACTTCGCCGATGTTTTCGGCGGTCCGCCGCGAA-C-TCTCCTCACCCGAAAATTT 237
|||||||||||| ||||||||||||||||||||||||| | | || ||||||||||||||
Sbjct 1032 GGAAGACTTCGCTGATGTTTTCGGCGGTCCGCCGCGAAGCGT-TC-TCACCCGAAAATTT 975
Query 238 TCCGGCGACTTCTCTCGTTCCGACTGTTTCTACGACGAGGTTTTCCGGCCTCCGGGGAA- 296
||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| ||
Sbjct 974 TCCGGCGACTTCTCTCGTTCCGACTGTTTCTACGACGAGATTTTTCAGCCTCCGGG-AAC 916
Query 297 TTTCTCCG--GG-GGCTCTCTTCCATCTTCTAAATCTCACGGAAGAAATTTACCATCGTT 353
||||||| || ||||||||| | ||||||||||||||||||||||| ||||| | ||
Sbjct 915 TTTCTCCTCCGGCGGCTCTCTTGCGTCTTCTAAATCTCACGGAAGAAACTTACCGGCATT 856
Query 354 CAGAATTCCGTCCGGCGGAGAAGGATTTTACGACGGCGTGTTTGGTGGTCGCGGCGGGTC 413
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 855 CAGAATTCCGTCCGGCGGGGAAGGATTTTACGACGGCGTGTTTGGTGGTCGCGGCGGTTC 796
Query 414 GGCGAAAGAGGGATCGAAAATACAGAGCTCGATGGCGAAATCGAGATCAAATTCATCGTC 473
||||| || |||||||||| ||||||||||||| ||||| | ||||| |||||||||||
Sbjct 795 TGCGAAGGAAGGATCGAAAAAACAGAGCTCGATGACGAAACCAAGATCGAATTCATCGTC 736
Query 474 GATGCTTTCTTCCGAGGAGGTCAGTCCTCACAACCCTCCACCAGCAGCAGCTTCCGGCGA 533
|||||| ||||||||||||| |||||||||| | ||||||||||| ||||||||||||||
Sbjct 735 GATGCTCTCTTCCGAGGAGGCCAGTCCTCACTATCCTCCACCAGCGGCAGCTTCCGGCGA 676
Query 534 CGACTCCGGATTTTCTTCTTTCACATCTAGACT 566
|||||||||||| ||||||||||| ||||||||
Sbjct 675 CGACTCCGGATTCTCTTCTTTCACTTCTAGACT 643
Score = 424 bits (229), Expect = 2e-117
Identities = 249/259 (96%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 566 TCAGACCGTTAAACGTCCCGTCAAGAAGTCATAAACGAGAGCCAAAGAAACAGAGTTTCT 625
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 549 TCAGACCGTTAAACGTCCCGTCGAGAAGTCATAAACGAGAGTCAAAGAAACAGAGTTTCT 490
Query 626 CGGCGTTTCCAACAGCCAAAGATTCATTTTCCGGCCAAAATAACACACCGGAAAAAGCTG 685
||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CGGCGGTTCCAAAAGCAAAAGATTCATTTTCCGGCCAAAATAACACACCGGAAAAAGCTG 430
Query 686 ATTTTTACTACAAAAAACCACATTTCGGCGGATCAAGAAGAGCCTCGCCAGAAACCATAA 745
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATTTCTACTACAAAAAAACACATTTCGGCGGATCAAGAAGAGCCTCGCCAGAAACCATAA 370
Query 746 GCTTGGATCCAAATTCCTTCAGAAGAATGGATGATTACGGACCAAGCTCTCCTGCATCTT 805
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 369 GCTTGGATCCGAATTCCTTCAGAAGAATGGATGACTACGGACCAAGCTCCCCTGCATCTT 310
Query 806 CCCCTGTTTCTTCCTTCAT 824
|||||||||||||||||||
Sbjct 309 CCCCTGTTTCTTCCTTCAT 291
Score = 291 bits (157), Expect = 2e-77
Identities = 183/195 (94%), Gaps = 3/195 (2%)
Strand=Plus/Minus
Query 949 GAGATAAACTCAGATCGATTCGATCGTTACAGAGAAGAaggaggaggaggaggaggagga 1008
||||||||||||||||||||||| || |||||||||| | |||||||||||||||||||
Sbjct 284 GAGATAAACTCAGATCGATTCGACCGATACAGAGAAG-A--AGGAGGAGGAGGAGGAGGA 228
Query 1009 AATTCAGATTCAAACGACATGGATGAAGCAATAGCTTGGGCAAAAGAGAGATCTCAACGA 1068
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 227 AATTCAGATTCAAACGACATGGATGAAGCAATAGCTTGGGCTAAAGAAAGATCTCAAAGA 168
Query 1069 CCAGAAGCAAAACAAATagaagaagacgtaatcgattcaagaagaagtgaagaagaaccc 1128
||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 167 CCAGAAGCAAAGCAAACAGAAGAAGATGTAATCGATTCGAGAAGAAGTGAAGAAGAACCC 108
Query 1129 aaatcagaagaagag 1143
|||||||||||||||
Sbjct 107 AAATCAGAAGAAGAG 93
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81224481810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5