BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473254
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30300.1 | Symbols: | Metallo-hydrolase/oxidoreductase supe... 1965 0.0
> AT1G30300.1 | Symbols: | Metallo-hydrolase/oxidoreductase superfamily
protein | chr1:10672998-10675368 FORWARD LENGTH=1368
Length=1368
Score = 1965 bits (1064), Expect = 0.0
Identities = 1193/1252 (95%), Gaps = 22/1252 (2%)
Strand=Plus/Plus
Query 1 TACGTTCGACTTTAGATTCCTCCTTCGCCGGAATATTCCATACGTAAGAGATACTGAAAT 60
||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 22 TACGTTCGACTCCAGATTCCTCCTTTGCCGGAATATTCCATACGTAAGAGATATTGAAAT 81
Query 61 CGCCGATGATGGAAAGTTTGATTCCGGCTGAGAACGGCTTTGTTACCTCTGATCGTGATA 120
|||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 82 CGCCGATGATGGAAAGTTCGATTCCGTCTGAGAACGGCTCCGTTACCTCTGATCGTGATA 141
Query 121 GATCGGCACTAATATTCCTCGGAACTGGATGTTCGAGCGCGGTACCTAACGCAATGTGCT 180
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 142 GATCGGCTCTAATATTCCTAGGAACTGGATGTTCAAGCGCGGTACCTAACGCAATGTGCT 201
Query 181 TGATCCAGCGATCTGATAGTCCCTGCTATGTTTGTTCCCAGTCTCTTTCGATCCCGCCTG 240
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 202 TGATCCAGCGATCTGATAATCCCTGCTATGTTTGTTCCCAGTCTCTTTCAATCCCGCCTG 261
Query 241 AGAAAAATCCTAATTACAGGGGGAATACTTCACTGCTCATTGATTATTGCCAAATTGATG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 262 AGAAAAATCCTAATTACAGGGGGAATACTTCACTGCTCATTGATTATTGCCAAAGTGATG 321
Query 301 GCAAACATAAATACATTCAAATCGATGTTGGCAAGACTTTCAGGGAACAAGTCCTTCGTT 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 322 GCAAACATAAATACATTCAAATCGATGTTGGCAAGACTTTCAGAGAACAAGTCCTTCGTT 381
Query 361 GGTTTACTCTTCACAAGATTCCTCAAGTTGATTCTATCATTTTGACTCATGAACATGCTG 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 382 GGTTTACTCTTCACAAGATTCCTCAAGTTGATTCTATAATTTTGACTCATGAACATGCTG 441
Query 421 ATGCAGTACTTGGCCTGGATGATATACGTTCAGTGCAACCATTTAGTCCTACTAATGATA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 ATGCAGTACTTGGCCTGGATGATATACGTTCAGTGCAACCATTTAGTCCTACTAATGATA 501
Query 481 TTGATCCTACTCCAATTTTTGTAAGCCAATACGCTATGGACAGCCTTGCTGTGAAGTTCC 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 502 TTGATCCTACTCCAATTTTTGTAAGCCAATACGCTATGGAAAGCCTTGCTGTGAAGTTCC 561
Query 541 CGTATTTGGTTCAGAAGAAACTTAAAGAAGGCCAAGAAGTTAGGCGAGTAGCACAGCTGG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 562 CGTATTTGGTTCAGAAGAAACTTAAAGAAGGCCAAGAAGTTAGGCGAGTAGCACAGCTAG 621
Query 601 ATTGGAGAATAATTGAAGAAGATTGTGAGAAGCCATTTGTAGCTTCAGGTTTATCATTCA 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 ATTGGAGAGTAATTGAAGAAGATTGTGAGAAGCCATTTGTAGCTTCAGGTTTATCATTCA 681
Query 661 CGCCACTTCCAGTGATGCATGGAGAAGACTATGTATGTCTTGGTTTCCTTTTTGGTGAAA 720
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 682 CGCCACTTCCAGTGATGCATGGAGAAGACTATGTATGTCTTGGCTTCCTTTTTGGTGAAA 741
Query 721 AATCAAGAGTGGCGTATATATCCGATGTATCACGGTTTCCTCCAAACACCGAGTATGCTA 780
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 742 AATCAAGAGTGGCTTATATATCCGATGTTTCACGGTTTCCTCCAAACACCGAGTATGCTA 801
Query 781 TATCAAAATCTGGTGGTGGACAATTGGATCTCCTTATCTTGGATACATTGTATAAGACAG 840
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 802 TATCAAAATCTGGTGGTGGACAATTGGATCTCCTTATTTTGGATACATTATATAAGACAG 861
Query 841 GATCTCACAACACCCACTTATGTTTCCCGCAGACATTAGACACAATCAAAAGACTGAGTC 900
|||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 862 GATCCCACAACACTCACTTATGTTTCCCGCAGACACTAGACACAATCAAAAGACTGAGTC 921
Query 901 CAAAAAGGGCTCTTCTAATCGGAATGACTCACGAGTTTGAGCATCACAAGGACAACGAGT 960
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 922 CAAAAAGGGCTCTTCTGATTGGAATGACTCACGAGTTTGATCATCACAAGGACAACGAGT 981
Query 961 TTCTTGAAGAATGGTCTAAAAGGGAAGGGATTTCAGTAAAACTCGCTCATGATGGCTTGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 TTCTTGAAGAATGGTCTAAAAGGGAAGGGATTTCAGTAAAACTCGCTCATGATGGCTTGA 1041
Query 1021 GAGTCCCAATAGACCTATGAAGAGGTGAAAATGATTACTTG--------A--AAGGAAAA 1070
||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 1042 GAGTCCCAATAGACCTATGAAGAGGTGAAAATGATTACTTGGCTTTCTCATTAACGAAAC 1101
Query 1071 TAAAATCATTGCCTTATTTTTTATC-GACTTCTGGAGTTCTGGTTAATTCAATGATGATG 1129
||| ||||||||||||||||||||| |||||||| | ||| | | |||||| || |
Sbjct 1102 TAAGATCATTGCCTTATTTTTTATCTGACTTCTG-A-TTC-----ACT-CAATGAGGAAG 1153
Query 1130 CTTGTAGGTCTTCTTGTGTTAAGATAGAGAGATAGAGAGCGGAGTGAAACGGTTTTGTTC 1189
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1154 CTTGTAGGTCTCCTTGTGTTA---TAGAGAGATAGAGAGCGGAGTGAAACGGTTTTGTTC 1210
Query 1190 AAGATGCATAATGCTCGCATGGCTTCATATCAACATTATCACTAATGTTTTT 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 AAGATGCATAATGCTCGCATGGCTTCATATCAACATTATCACTAATGTTTTT 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5