BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473255
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30320.1 | Symbols: | Remorin family protein | chr1:1068024... 1914 0.0
> AT1G30320.1 | Symbols: | Remorin family protein | chr1:10680246-10682954
FORWARD LENGTH=1734
Length=1734
Score = 1914 bits (1036), Expect = 0.0
Identities = 1218/1302 (94%), Gaps = 28/1302 (2%)
Strand=Plus/Plus
Query 424 CAGCAGTTTAGAAAAGGGGACTTGAATATGGCTCCTCATCATATAATGAGACCTCAAGAA 483
||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 457 CAGCAATTTAGGAAAGGGGACTTGAATATGGCTTCTCCTCATATAATGAGACCTCAAGAA 516
Query 484 GATGAAAATCTTGATTATGACAGTAACGCTAGCTCTTCAAGCTTCGAGTTTCACCGAGCT 543
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 GATGAAAACCTTGATTATGACAGTAACGCTAGCTCTTCAAGCTTCGAGTTTCACCGAGCT 576
Query 544 CGTGGTGAGCGTTCGAATCAGAATCATGGATCAAGAGGATATCCTTCAAGACAAATGCCA 603
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 577 CGTGGTGAGCGTTCGAATCAGAATCATGGCTCAAGAGGATATCCTTCAAGACAAATGCCA 636
Query 604 TCCAAATGGAATGATGCTGAGAAGTGGATAATGAGCAGACAGAACATGGTGATGAGGAAG 663
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TCTAAATGGAATGATGCTGAGAAGTGGATAATGAGCAGACAGAACATGGTGATGAGGAAG 696
Query 664 AACGGTCAAGGGAACCGAATGCCCGTGAGAGTTGTGCCTGATAATGCAGGTTATGAGCAT 723
|||||||||||||||||||| || |||||| |||||||||||||||||||||| ||||||
Sbjct 697 AACGGTCAAGGGAACCGAATACCTGTGAGAATTGTGCCTGATAATGCAGGTTACGAGCAT 756
Query 724 AACAAATCTAGGATGGATCTGTGCCAATCCTCACAAGTTGATGGGTTCGAGAAGTTCCCT 783
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 757 AACAAATCTAGGATGGATCTGTGCCAATCCTCACAAGTTGATGGGTTTGAGAAGTTCCCT 816
Query 784 AATTTTGTTCCCTCGGCGCCACATCCAATTCTAACTCAAGAGTATGGAGGAAACTCGTTG 843
||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 817 AATGTTGTTCCCTCGGCGCCACATCCTATTCTAACTCAAGAGTATGGAGGAGACTCGTTG 876
Query 844 ATCGATCAATCCACACAAAGCAATGATCTTGTGG-TTCCATCACAAGATAATTCAACAGG 902
|| || ||||||||||||||||||||||||| || ||| |||||| ||| || |||||||
Sbjct 877 ATTGACCAATCCACACAAAGCAATGATCTTGCGGATTC-ATCACATGATCATACAACAGG 935
Query 903 TGGTCATGCGATTCGTTCTGTTTGTATGAGAGATATGGGAACCGATATGACGCCAATACC 962
||||| |||||||||||| || ||||||||||||||||||||||| ||||| || |||||
Sbjct 936 TGGTCCTGCGATTCGTTCGGTATGTATGAGAGATATGGGAACCGAAATGACACCTATACC 995
Query 963 GAGTCAAGAACCTTCAAGATCGGTCACACCAGTTGGTGCAACAACTCCACTTCGTAGCCC 1022
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 996 GAGTCAAGAACCTTCAAGATCTGTGACACCAGTTGGTGCAACAACTCCTCTTCGTAGCCC 1055
Query 1023 GACTTCATCTCTCCCTTCTACTCCTAGAGGTGGCCAACAAGAGGAATCTTCTTTATCGCA 1082
|||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
Sbjct 1056 GACTTCATCTCTCCCTTCTACTCCTAGAGGTGGCCAACCAGAGGAATCTTCT--AT-GT- 1111
Query 1083 AAACCAGCCGAAAAACACAAGAAGAGAACTATCTGAGGAGGAAGAGAAAGCGAAGACGCG 1142
| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 ---C--G---AAAAACACAAGAAGAGAACTATCTGAGGAGGAAGAGAAAGCGAAGACGCG 1163
Query 1143 AAGAGAGATTGTAGCTCTCGGAGTTCAGCTAGGGAAGATGAACATCGCCGCTTGGGCAAG 1202
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 AAGAGAGATTGTAGCTCTTGGAGTTCAGCTAGGGAAGATGAACATCGCCGCTTGGGCAAG 1223
Query 1203 TAAAGAAGAAGCGGAGAACAAGAACAACAATGGAGATGCAGAGGAGGCACAGAAGATTGA 1262
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1224 TAAAGAAGAAGAGGAGAACAAGAAAAACAATGGAGATGCAGAGGAGGCACAGAAGATTGA 1283
Query 1263 GTTTGAAAAACGAGCGACTGCATGGGAAGAAGCAGAGAAATCGAAACATAATGCAAGGTA 1322
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1284 GTTTGAAAAACGAGCGACTGCATGGGAAGAAGCAGAGAAATCCAAACATAATGCGAGGTA 1343
Query 1323 TAAGCGTGAGGAAATCAGAATCCAAGCTTGGGAAAGTCAGGAGAAAGCGAAACTCGAAGC 1382
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1344 TAAGCGTGAGGAAATCAGAATCCAAGCTTGGGAAAGTCAGGAGAAAGCCAAACTCGAAGC 1403
Query 1383 AGAAATGCGACGAATCGAGGTATGTGAGGCTAAAGTTGAGCAAATGAAAGCTGAAGCTGA 1442
|||||||||||| | | || | |||||||||||||||| |||||||||||||||||
Sbjct 1404 AGAAATGCGACG--T--A--TA-G--AGGCTAAAGTTGAGCAGATGAAAGCTGAAGCTGA 1454
Query 1443 AGCAAAGATAGTGAAGAAAATTGCGATGGCTAAGCAAAGTTCAGAAGAGAAACGGGCTTT 1502
|||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1455 AGCAAAGATAATGAAGAAAATTGCGTTGGCTAAGCAAAGGTCAGAAGAGAAACGGGCTTT 1514
Query 1503 AGCGGAAGCTAGAAAAATCCGTGATGCGGAGAAGGCAGTGGCTGAAGCCCAATATATCCG 1562
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1515 GGCGGAAGCTAGAAAAACCCGTGATGCTGAGAAGGCAGTGGCTGAAGCCCAATATATTCG 1574
Query 1563 GGAAACTGGTCGAATACCGGCATCAAGCTACAAGATATGTTGTGGTTGGTTCTCATGAGG 1622
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1575 GGAAACTGGTAGAATACCGGCATCAAGTTACAAGATATGTTGTGGTTGGTTCTCATGAGG 1634
Query 1623 CACTTG-ATTGAGTTTTCGGTGTT-TGAGTAAACCATGGTTGGATTATCAAA-CCCCTTT 1679
|| ||| |||||||||| ||| || ||||||||||||| ||||||| ||||| |||||||
Sbjct 1635 CA-TTGGATTGAGTTTTTGGTCTTCTGAGTAAACCATGATTGGATTCTCAAAGCCCCTTT 1693
Query 1680 TTTGTAATATATAAATGAAATGCATAGTATGTTGCATAGACT 1721
| |||||||| ||||| |||||||| |||||||||||||||
Sbjct 1694 GT-GTAATATAGAAATGGAATGCATATTATGTTGCATAGACT 1734
Score = 573 bits (310), Expect = 2e-162
Identities = 393/431 (91%), Gaps = 14/431 (3%)
Strand=Plus/Plus
Query 1 CAttctgtctctcttcttcttcttcttcAGAAGACAGAGGAATTAGAGAAAGAAAGC--- 57
|||| |||||||||||||| | || ||||| ||||||||||||||||||||| ||||
Sbjct 2 CATTTTGTCTCTCTTCTTC-T-TT-TTCAG-AGACAGAGGAATTAGAGAAAGCAAGCTTT 57
Query 58 ---T-TGTAAATATACAGAGATAGAGAAAAAGATTTGGCATTGGCAATGGATTACGAGAG 113
| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 58 GTGTCTGTAAATATAAAGAGATAGAG-AAAAGATTTGGCATTGGCAATGGATTACGAGAG 116
Query 114 GATAGAGAAAGTGCAGAAGAGCATAATCTCGCCCACGAAGCTGCGAATGAAGCTAATGGG 173
|||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 117 GATACAGAAAGTGCAGAAGAGTATAATCTCGCCAACGAAGCTGAGAATGAAGCTAATGGG 176
Query 174 TCCACTCAATAACATGAAGAGAGAAGGATCCAAGTCCAACAGTAACTCTTCAAGAACATC 233
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TCCACTCAATAACATGAAGCGAGAAGGATCCAAGTCCAACAGTAACTCTTCAAGAACATC 236
Query 234 TCCTTCTCGTCTTCAGATTTCAGACGACTCTGAGTTCTCCAAGAACAGCTTGTTAGCTTC 293
||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 237 TCCTTCTCGTCTTCAGATTCCAGATGACTCCGAGTTCTCCAAGAACAGCTTGTTAGCTTC 296
Query 294 TAAATCTTTTTCAGACGACGATGTGGCGGCTTCAACAACGGATATAGAAGTAGCTAAACT 353
||| |||| |||||||||||||||||| ||| |||| |||||||||||||||||||| ||
Sbjct 297 TAACTCTTATTCAGACGACGATGTGGCAGCTACAACTACGGATATAGAAGTAGCTAAGCT 356
Query 354 GCCAAATGAGCCGGTTTTGGA-CCTAACCGAGAGCGATAATCAAGCCTCGATACATCGAT 412
||||||||||||||||||| | || |||||||| ||||||||||| ||| | | |||| |
Sbjct 357 GCCAAATGAGCCGGTTTTGTATCC-AACCGAGAACGATAATCAAGGCTCAAAAGATCGGT 415
Query 413 GTGAAGGTGTT 423
|||||||||||
Sbjct 416 GTGAAGGTGTT 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85089923775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5