BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473256
Length=2977
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30330.2 | Symbols: ARF6 | auxin response factor 6 | chr1:10... 3134 0.0
> AT1G30330.2 | Symbols: ARF6 | auxin response factor 6 | chr1:10685822-10690838
REVERSE LENGTH=3827
Length=3827
Score = 3134 bits (1697), Expect = 0.0
Identities = 1892/1986 (95%), Gaps = 14/1986 (1%)
Strand=Plus/Plus
Query 1 ATGAGATTATCTTCAGCTGGGTTTAATCCTCAACCTCATGAAGTTACAGGAGAGAAAAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ATGAGATTATCTTCAGCTGGGTTTAATCCTCAACCTCATGAAGTTACAGGAGAGAAAAGA 776
Query 61 GTTCTTAATTCTGAGCTCTGGCATGCTTGTGCTGGTCCTCTTGTCTCACTACCTCCTGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GTTCTTAATTCTGAGCTCTGGCATGCTTGTGCTGGTCCTCTTGTCTCACTACCTCCTGTT 836
Query 121 GGAAGCAGAGTTGTGTATTTCCCTCAAGGTCACAGTGAACAGGTTGCTGCTTCGACTAAC 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 837 GGAAGCAGAGTTGTGTATTTTCCTCAAGGTCACAGTGAACAGGTTGCTGCTTCGACCAAC 896
Query 181 AAAGAAGTAGATGCTCATATACCAAATTACCCGAGTTTGCATCCGCAGCTTATCTGTCAG 240
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 897 AAAGAAGTAGATGCTCATATACCAAATTATCCGAGCTTGCATCCGCAGCTTATCTGTCAG 956
Query 241 CTTCACAATGTCACAATGCATGCTGATGTGGAGACTGATGAAGTCTATGCACAGATGACT 300
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CTTCATAATGTTACAATGCATGCTGATGTGGAGACTGATGAAGTCTATGCACAGATGACT 1016
Query 301 TTGCAACCGTTGAATGCGCAAGAGCAAAAAGATCCCTACCTTCCGGCAGAATTAGGTGTC 360
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1017 TTGCAACCGTTGAATGCGCAAGAGCAAAAAGATCCTTACCTTCCCGCGGAATTAGGTGTC 1076
Query 361 CCGAGTAGACAGCCTACAAACTATTTCTGTAAAACTCTGACTGCTAGTGATACAAGCACT 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CCAAGTAGACAGCCTACAAACTATTTCTGTAAAACTCTGACTGCTAGTGATACAAGCACT 1136
Query 421 CATGGAGGTTTCTCTGTACCTCGTCGAGCTGCTGAGAAAGTTTTCCCTCCCTTGGACTAC 480
|| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1137 CACGGAGGTTTTTCTGTACCTCGCCGAGCTGCTGAGAAAGTTTTCCCTCCCTTGGATTAC 1196
Query 481 TCGCAGCAGCCTCCAGCTCAAGAGTTAATGGCGAGGGATCTGCATGATAATGAATGGAAG 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TCGCAGCAGCCACCAGCTCAAGAGTTAATGGCGAGGGATCTGCATGATAATGAATGGAAG 1256
Query 541 TTCAGGCATATTTTCCGAGGCCAACCAAAGAGACATCTCCTTACTACGGGTTGGAGCGTA 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1257 TTCAGGCATATTTTCCGAGGCCAACCAAAGAGACATCTCCTTACCACGGGTTGGAGCGTA 1316
Query 601 TTCGTGAGTGCTAAAAGGCTTGTTGCCGGTGACTCTGTTCTTTTCATCTGGAACGATAAG 660
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1317 TTTGTGAGTGCTAAAAGGCTTGTTGCTGGTGACTCTGTTCTTTTCATCTGGAACGATAAG 1376
Query 661 AATCAATTACTTCTTGGTATAAGACGAGCCAACCGACCGCAAACTGTCATGCCTTCCTCT 720
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1377 AATCAATTACTTCTTGGTATAAGACGAGCCAACCGACCACAAACTGTCATGCCTTCATCT 1436
Query 721 GTTCTGTCAAGTGACAGTATGCATTTAGGCCTTCTCGCTGCAGCAGCTCATGCTGCCGCC 780
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1437 GTTTTGTCAAGTGACAGTATGCATTTAGGCCTTCTTGCTGCAGCAGCTCATGCTGCCGCT 1496
Query 781 ACTAACAGCCGATTCACCATATTCTATAACCCGAGGGCGAGTCCATCAGAGTTCGTTATA 840
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1497 ACAAACAGCCGATTCACCATCTTCTATAACCCGAGGGCGAGTCCATCAGAGTTTGTTATA 1556
Query 841 CCCCTGGCTAAGTATGTGAAAGCTGTTTATCACACTCGCGTCTCTGTTGGCATGCGGTTT 900
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1557 CCCCTGGCTAAGTATGTGAAAGCGGTTTATCACACTCGCGTCTCTGTTGGTATGCGGTTT 1616
Query 901 AGGATGCTGTTTGAAACCGAAGAATCAAGTGTTCGTCGGTACATGGGTACAATAACTGGC 960
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1617 AGGATGCTGTTTGAAACTGAAGAATCTAGTGTTCGTCGGTACATGGGTACAATAACTGGC 1676
Query 961 ATTTGTGATCTAGATCCTACTCGTTGGGCTAATTCGCATTGGCGGTCTGTCAAGGTTGGG 1020
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1677 ATTTGTGATCTAGATCCTACTCGTTGGGCTAATTCGCATTGGCGATCTGTCAAGGTTGGG 1736
Query 1021 TGGGACGAGTCTACTGCAGGAGAGAGGCAACCGAGGGTTTCCTTGTGGGAGATTGAGCCT 1080
|||||||| ||||||||||||||||| || || |||||||| ||||||||||||||||||
Sbjct 1737 TGGGACGAATCTACTGCAGGAGAGAGACAGCCAAGGGTTTCATTGTGGGAGATTGAGCCT 1796
Query 1081 TTAACAACATTCCCTATGTATCCATCTCCTTTTCCTCTCAGGCTGAAACGTCCGTGGCCT 1140
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1797 TTAACAACATTCCCTATGTATCCATCTCCTTTTCCTCTCAGGCTTAAACGGCCGTGGCCT 1856
Query 1141 CCTGGTCTCCCATCTTTCCATGGCCTTAAAGAAGATGACATGGGTATGAGTATGAGTTCG 1200
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1857 CCTGGTCTCCCATCTTTCCATGGCCTTAAAGAAGATGATATGGGTATGAGTATGAGTTCA 1916
Query 1201 CCGCTTATGTGGGATCGAGGACTCCAGTCTCTAAACTTTCAAGGTATGGGAGGAAACCCG 1260
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1917 CCGCTTATGTGGGATCGAGGACTCCAATCTCTAAACTTTCAAGGTATGGGAGTAAACCCG 1976
Query 1261 TGGATGCAGCCAAGACTTGATTCTTCGGGTTTGCTTGGTATGCAAAACGATGTGTACCAA 1320
||||||||||| ||||||||| | ||||| ||||||||||||||||| ||||||||||||
Sbjct 1977 TGGATGCAGCCGAGACTTGATACGTCGGGCTTGCTTGGTATGCAAAATGATGTGTACCAA 2036
Query 1321 GCAATGGCTGCAGCTGCCCTTCAAGACATGAGAGGCATTGATCCCGCAAAAGCTGCTGCT 1380
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2037 GCAATGGCTGCAGCTGCCCTTCAAGACATGAGAGGCATTGATCCTGCAAAAGCTGCTGCT 2096
Query 1381 TCACTTCTTCAGTTCCAAAATTCTTCAGGATTCTCAATGCAATCTCCGTCCTTAGTGCAG 1440
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 2097 TCACTTCTTCAGTTCCAAAATTCGCCGGGGTTCTCAATGCAATCTCCGTCCTTAGTGCAG 2156
Query 1441 CCGCAAATGCTgcagcagcaactctctcagcagcagcagcaacaactctct-cagcagca 1499
||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 2157 CCGCAGATGCTGCAGCAGCAACTCTCTCAGCAGCAGCAACAACT-CTCTCAGCAGCAGCA 2215
Query 1500 gcagca--a-ct-ctctcagcagcagcagcagcagcagcaactctctcagcagcagcagc 1555
|||||| | | ||||| || ||||||||||| |||| ||||||| ||||||||||
Sbjct 2216 GCAGCAGCAACAGCTCTCC-CAACAGCAGCAGCAACAGC---TCTCTCAACAGCAGCAGC 2271
Query 1556 aacaacagctctctcagcagcagcaacaacagctctctcagcagcagcagcaacatgcat 1615
| || ||||||||| |||||||| ||||| ||||||||||||||||||||||| || |
Sbjct 2272 AGCA---GCTCTCTCAACAGCAGCAGCAACAACTCTCTCAGCAGCAGCAGCAACAGGCGT 2328
Query 1616 atctcagcGTTCCTGAAACCCACCAGCCTCAATCTCAGGCTCAATCACAGTCAAACAATC 1675
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2329 ATCTTGGCGTTCCTGAAACCCACCAGCCTCAGTCTCAGGCTCAATCACAGTCAAACAATC 2388
Query 1676 ATCTTTCTCAGCAGCAGCAGCAAGTAGAGAATAATCACAATCCGTCTGCGTCCAGTGCTG 1735
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 2389 ATCTTTCTCAGCAGCAGCAGCAAGTAGTGGATAATCATAATCCGTCTGCGTCCAGTGCTG 2448
Query 1736 CTGTTGTTTCCGCTATGTCTCAATTTGGTTCTGCTTCTCAGTCCAACACGTCACCACTCC 1795
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2449 CTGTTGTTTCCGCTATGTCTCAATTTGGTTCTGCTTCTCAGCCCAACACGTCACCACTCC 2508
Query 1796 AGTCCATGACTTCTCTGTGTCATCAACAAAGCTTCTCCGACACCAACGGAGGAAACAATC 1855
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2509 AGTCCATGACCTCTCTGTGTCATCAGCAAAGCTTCTCCGATACCAACGGAGGAAACAATC 2568
Query 1856 CTATTTCTCCGCTTCACACTCTTCTCAGTAACTTCTCTCAAGACGAGTCTTCTCAACTGC 1915
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2569 CTATTTCTCCACTTCACACTCTTCTCAGTAACTTCTCTCAAGACGAATCTTCTCAACTGC 2628
Query 1916 TCAACCTCACTAGAACAAACTCTGCAATGACTTCATCCGGTTGGCCATCAAAGCGTCCTG 1975
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2629 TCCACCTCACTAGAACAAACTCTGCAATGACTTCATCCGGTTGGCCATCAAAGCGTCCTG 2688
Query 1976 CATGTT 1981
|| |||
Sbjct 2689 CA-GTT 2693
Score = 1659 bits (898), Expect = 0.0
Identities = 965/996 (97%), Gaps = 9/996 (1%)
Strand=Plus/Plus
Query 1984 ATCGAGCAAGAAGGAAGCGCCTCAGACCCGCATAGCCATCTTCTCTTTGGAGTCAACATA 2043
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2832 ATCGAGCAAGAAGGAAGCGCCTCAGACCCGCATAGCCATCTTCTCTTTGGAGTCAATATA 2891
Query 2044 GATTCATCTTCTCTTTTGATGCCGAACGGAATGTCAAACCTTAGAAGCATTGGCATTGAA 2103
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2892 GATTCATCTTCTCTTTTGATGCCGAACGGAATGTCAAACCTTAGAAGCATTGGTATTGAA 2951
Query 2104 GGTGGTGACTCCACGACTTTACCCTTCACATCATCTAATTTCAACAACGATTTCTCGGGT 2163
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2952 GGTGGTGACTCCACGACTTTACCCTTCACATCATCTAATTTCAACAATGATTTCTCGGGT 3011
Query 2164 AATCTTGCAATGACAACGCCTTCTAGTTGTATAGATGAATCGGGTTTTCTACAATCCTCA 2223
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3012 AATCTTGCAATGACAACACCTTCTAGTTGCATAGATGAATCGGGTTTTCTACAATCCTCA 3071
Query 2224 GAAAACCTCGGTTCCGAGAACCCACAATCTAACACCTTTGTGAAGGTGTACAAGTCAGGG 2283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3072 GAAAACCTCGGTTCCGAGAACCCACAATCTAACACCTTTGTGAAGGTGTACAAGTCAGGG 3131
Query 2284 TCTTTTGGAAGATCGTTAGATATATCAAAATTTAGCAGCTACCACGAGCTGCGAAGCGAG 2343
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3132 TCTTTTGGAAGATCGTTAGATATATCAAAGTTTAGCAGCTACCACGAGCTGCGAAGCGAG 3191
Query 2344 CTTGCTCGCATGTTTGGCCTTGAAGGCCAATTAGAAGACCCTGTGAGATCAGGCTGGCAG 2403
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3192 CTTGCTCGCATGTTTGGCCTCGAAGGCCAATTAGAAGACCCTGTGAGATCAGGCTGGCAG 3251
Query 2404 CTTGTATTTGTTGACCGAGAGAACGACGTTCTTCTCCTCGGCGATGACCCTTGGCCGGCG 2463
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3252 CTTGTATTTGTTGACCGAGAGAACGACGTTCTTCTCCTCGGCGATGACCCTTGGCCGGAG 3311
Query 2464 TTTGTGAGCAGCGTGTGGTGCATTAAGATACTGTCACCACAAGAAGTGCAGCAAATGGGT 2523
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3312 TTTGTGAGCAGCGTGTGGTGCATTAAGATACTGTCACCACAAGAAGTGCAACAAATGGGA 3371
Query 2524 AAAAGAGGCCTTGAGCTTCTCAATTCCGCGCCATCTTCCAACAATGTCGATAAGCTCCCG 2583
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3372 AAAAGAGGCCTTGAGCTTCTCAACTCCGCGCCATCTTCCAACAATGTCGATAAGCTCCCG 3431
Query 2584 AGCAACGGGAACTGTGATGACTTTGGGAACCGGTCAGACCCGAGGAATCTCGGTAACGGT 2643
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3432 AGCAACGGGAACTGTGACGACTTTGGGAACCGGTCAGACCCGAGGAATCTCGGTAACGGT 3491
Query 2644 ATCGCATCAGTTGGGGGTTCGTTCAACTACTAGAAGTAGAAGGAAACC-CCCATTTTTAT 2702
|||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||
Sbjct 3492 ATCGCATCAGTTGGGGGTTCATTCAACTACTAGAAGTAGATGGAAACCTCCC-TTTTTAT 3550
Query 2703 TCAAGTTAAGTTTCAATCTTATAAATTAGTAGTGAGATCCTCTTAGTTTAATTACTAGCA 2762
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3551 TCAAGTTAAGTTTCAATCTTATAAATTAGTAGTGAGATCATCTTAGTTTAATTACTAGCA 3610
Query 2763 AAA-TCTCTCTTTATTACTTATTAAAAAAGGGGAGATATGCCTTTGCCTTTG-TGGAAAC 2820
||| |||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||
Sbjct 3611 AAAATCTCTCTTTATTACTTAT-AAAAAAGGG-AGATTTGCCTTTGCCTTTGATGGAAAC 3668
Query 2821 AAAAAACTATATAATCCCTCTGTCGACTCGTAATACTGTAATTATAAGAtcttttggtct 2880
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3669 AAAAA-CTATATAATCCCTCTGTCGACTCGTAATACTGTAATTATAAGATCTTTTGGTCT 3727
Query 2881 ttttcttatatgaatattttttactcaacttttatatatgtcattttctttactcacttc 2940
||||||||||||||||||||| ||| |||| | |||||||||| |||| ||||||| |||
Sbjct 3728 TTTTCTTATATGAATATTTTT-ACTGAACTCT-ATATATGTCACTTTCCTTACTCATTTC 3785
Query 2941 ttcAATCAATATGATAGTGAAGTGTTATTTTGGAGT 2976
|||||||||||||||||||||| |||||||||||||
Sbjct 3786 TTCAATCAATATGATAGTGAAGGGTTATTTTGGAGT 3821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147992481850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5