BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473259
Length=2563
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30360.1 | Symbols: ERD4 | Early-responsive to dehydration s... 3945 0.0
> AT1G30360.1 | Symbols: ERD4 | Early-responsive to dehydration
stress protein (ERD4) | chr1:10715665-10718997 FORWARD LENGTH=2600
Length=2600
Score = 3945 bits (2136), Expect = 0.0
Identities = 2449/2595 (94%), Gaps = 41/2595 (2%)
Strand=Plus/Plus
Query 1 AACAATAGAAAAATATCTT-CTTTCTTTTTCTGTGAATACATCTATAAAGT-ACAAAAGa 58
||||||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||
Sbjct 12 AACAATAGAAAAATATCTTCCTTTCTTTTTCTGTGAATACACCAATAAAGTGACAAAAG- 70
Query 59 aaaaaaGCCTGTCCTCTCTCACCTGTAAAAATTACCAGAAG--AATCTCAAACGGTTTAC 116
|||||||||||| |||||||||||| |||||||||||| ||| | |||| | ||||
Sbjct 71 -AAAAAGCCTGTCTTCTCTCACCTGT---AATTACCAGAAGACAATAT-AAACTG-TTAC 124
Query 117 TTTCCTTCTTTTGTT-TTCACCTTTAAAAACGGCTAC-TT---G-A---GAG--GATTTA 165
||||||||||||||| | | ||||||||||||||||| || | | ||| ||||||
Sbjct 125 TTTCCTTCTTTTGTTGTACCCCTTTAAAAACGGCTACTTTAGAGAACTTGAGAAGATTTA 184
Query 166 GAAAGAAACAGAGAGCTTGAGAGATTCCTCTGGCAAAACCCAGATGGAGTTTGGATCTTT 225
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 185 GAAAGAAACAGAGAGCTTGAGAGATTCCTCTGGCTAAACCCAGATGGAGTTTGGATCTTT 244
Query 226 TCTTGTGTCCTTAGGGACATCTTTTGTTGTCTTCGTCGTTCTCATGCTTCTCTTCACATG 285
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||
Sbjct 245 TCTTGTGTCCTTAGGGACATCTTTTGTTATCTTCGTCATTCTCATGCTTCTCTTCACCTG 304
Query 286 GCTTTCTCGCAAATCCGGAAATGCTCCCATTTATTACCCGAATCGGATCCTTAAAGGGTT 345
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 305 GCTTTCTCGCAAATCTGGAAATGCTCCCATTTATTACCCGAATCGGATCCTTAAAGGGCT 364
Query 346 GGAGCCATGGGAAGGTACCTCCTTGACTCGAAACCCTTTTGCTTGGATGCGTGAAGCTTT 405
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GGAGCCATGGGAAGGCACCTCCTTGACTCGAAACCCTTTTGCTTGGATGCGTGAAGCTTT 424
Query 406 GACTTCTTCTGAGCAAGACGTTGTTAACTTATCCGGCGTCGATACTGCTGTCCACTTTGT 465
|||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 425 GACTTCCTCTGAACAAGATGTCGTTAACTTATCCGGCGTCGATACTGCTGTCCACTTTGT 484
Query 466 CTTCTTGACCACTGTTCTGGGGATATTTGCTTGTTCCGGTCTTCTTCTCTTACCGACTCT 525
|||||||| |||||||||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 485 CTTCTTGAGCACTGTTCTGGGGATATTTGCTTGTTCCAGTCTTCTTCTCCTACCAACTCT 544
Query 526 ACTGCCTCTAGCCGCTACAGACAACAACTTAAAGAACAC-AA-AA----ACAGATACCAC 579
|||||||||||||||||||||||||||| |||||||||| || || |||||||||||
Sbjct 545 ACTGCCTCTAGCCGCTACAGACAACAACATAAAGAACACAAAGAATGCGACAGATACCAC 604
Query 580 AAGCAAAGGAACTTTTAGCCAACTTGATAATCTATCAATGGCTAACATCACaaaaaaaaG 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AAGCAAAGGAACTTTTAGCCAACTTGATAATCTATCAATGGCTAACATCACAAAAAAAAG 664
Query 640 TCCGAGGCTGTGGGCGTTCCTAGGAGCGGTTTACTGGATATCTTTGGTCACATATTTCTT 699
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 665 TTCGAGGCTGTGGGCGTTCCTAGGAGCTGTTTACTGGATATCTTTGGTCACATATTTCTT 724
Query 700 CTTGTGGAAAGCTTATAAGCATGTCTCTACGTTGAGGGCACAAGCTCTGATGTCTGCTGA 759
|||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||||
Sbjct 725 CTTGTGGAAAGCTTATAAGCATGTCTCTTCATTGAGAGCTCAAGCTCTGATGTCTGCTGA 784
Query 760 TGTCAAACCCGAGCAATTCGCTATTCTTGTTAGGGATATGCCTTCACCACCTGACGGGCA 819
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 785 TGTAAAACCCGAGCAATTCGCTATTCTTGTTAGGGATATGCCTGCACCACCTGACGGGCA 844
Query 820 GACACAGAAAGAGTTCATCGATTCTTATTTCAGAGAAATATACCCCGAGACATTCTACAG 879
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 845 GACACAGAAAGAGTTTATTGATTCTTATTTCAGAGAAATATACCCTGAGACATTCTACAG 904
Query 880 ATCGCTTGTCGCAACAGAAAACAGCAAGGTTAATAAGATATGGGGAAAGTTGGAAGGTTA 939
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 905 ATCGCTTGTCGCAACAGAAAACAGCAAGGTTAATAAAATATGGGAAAAATTGGAAGGTTA 964
Query 940 CAAGAAGAAGCTTGCGCGAGCAGAAGCAATACTT-GCAGCAACTAATAACCGACCCACGA 998
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 965 CAAGAAGAAGCTTGCGCGAGCAGAAGCAATA-TTAGCAGCAACTAATAACCGTCCCACGA 1023
Query 999 ACAAAACCGGCTTGTGTGGGCTAGTCGGTAAACAAGTTGACAGCATTGAGTATTACACCG 1058
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1024 ACAAAACCGGCTTCTGTGGGCTAGTCGGTAAACAAGTAGACAGCATTGAGTATTACACTG 1083
Query 1059 AGCTAATCAACGAGTCTGTAGCCAATCTAGAAACAGAGCAGAAAGCGGTTCTTGCCGAGA 1118
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 1084 AGCTAATCAACGAGTCTGTAGCCAAACTGGAAACAGAGCAGAAAGCGGTTCTTGCTGAGA 1143
Query 1119 AGCAGCAAACCGCGGCAGTGGTCTTCTTCACAACCCGGGTTGCCGCCGCATCAGCCGCTC 1178
||||||||||||| |||||||| |||||||||||| ||||||| || |||||||| ||||
Sbjct 1144 AGCAGCAAACCGCAGCAGTGGTTTTCTTCACAACCAGGGTTGCTGCTGCATCAGCAGCTC 1203
Query 1179 AGTCTCTGCACTGCCAGATGGTTGATAAATGGACTGTGACCGAAGCTCCCGAGCCTCGGG 1238
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1204 AGTCTCTGCACTGCCAGATGGTTGATAAATGGACTGTGACCGAAGCTCCTGAGCCACGGC 1263
Query 1239 AGCTCCTATGGCAGAATCTCAACATCAAGCTCTTCAGCAGAATAATCCGGCAATACTTCA 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AGCTCCTATGGCAGAATCTCAACATCAAGCTCTTCAGCAGAATAATCCGGCAATACTTCA 1323
Query 1299 TCTACTTCTTTGTTGCTCTGACCATTCTGTTTTATATGATCCCAATCGCGTTCGTCTCTG 1358
|||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1324 TCTACTTCTTTGTTGCAGTGACCATTCTGTTTTACATGATACCAATCGCGTTCGTCTCTG 1383
Query 1359 CAATCACCACTCTTGAGAATCTTCAGAAGATTATCCCGTTCATAAAGCCGATTGTGGAGA 1418
| |||||||||||| |||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct 1384 CCATCACCACTCTTAAGAATCTTCAGAGGATTATTCCGTTCATAAAGCCGGTTGTGGAGA 1443
Query 1419 TAACCGCCATAAGAACCGTTTTGGAGTCTTTCCTTCCTCAAATTGCGCTCCTCGTTTTCT 1478
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 1444 TAACCGCCATAAGAACCGTTTTGGAGTCTTTCCTTCCTCAGATTGCGCTCATTGTTTTCT 1503
Query 1479 TGGCGATGTTGCCTAAGCTTCTCTTGTTTCTCTCCAAAGCCGAGGGAATTCCGTCGCAGA 1538
|||| |||||||| |||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1504 TGGCCATGTTGCCGAAGCTTCTCTTGTTTCTCTCCAAAGCCGAGGGGATTCCTTCACAGA 1563
Query 1539 GCCATGCCATTAGGGCTGCTTCAGGGAAGTACTTTTACTTCTCAGTCTTTAATGTCTTCA 1598
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1564 GCCATGCCATTAGGGCTGCTTCAGGGAAGTACTTTTACTTCTCGGTCTTTAATGTCTTCA 1623
Query 1599 TTGGTGTTACCCTTGCGGGGACTTTGTTCAACACAGTGAAGGATATCGCGAAAAATCCCA 1658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 TTGGTGTTACCCTTGCTGGGACTTTGTTCAACACAGTGAAGGATATCGCGAAAAATCCCA 1683
Query 1659 AACTCGACATGGTCATTAATCTTTTGGCTACTAGCCTCCCTAAGAGCGCAACTTTCTTCT 1718
||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1684 AACTCGACATGATTATTAACCTTTTGGCTACTAGCCTCCCTAAGAGCGCAACTTTCTTCC 1743
Query 1719 TGACCTACGTTTCTCTCAAGTTCTTTATCGGTTATGGCCTTGAACTGTCTCGGATCATAC 1778
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1744 TGACCTACGTTGCTCTCAAGTTCTTTATCGGTTATGGCCTTGAGCTGTCTCGGATCATAC 1803
Query 1779 CTTTGATAATCTTCCACCTGAAAAAGAAGTATGTCTGCAAAACCGAAGCGGAGGTCAAAG 1838
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1804 CTTTGATAATCTTCCACCTGAAAAAGAAGTATCTCTGCAAAACCGAAGCGGAGGTCAAAG 1863
Query 1839 AAGCTTGGTACCCGGGAGACTTAAGCTATGCGACTAGGGTTCCCGGAGACCTGCTCATCC 1898
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1864 AAGCTTGGTACCCGGGAGACTTAAGCTATGCGACTAGGGTTCCCGGAGACATGCTCATCC 1923
Query 1899 TCACAATCACGTTCTGCTATTCTGTAATTGCTCCTCTTATCCTCATATTCGGCATCACCT 1958
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1924 TCACAATCACGTTCTGCTATTCAGTCATTGCTCCTCTTATCCTCATATTCGGCATCACCT 1983
Query 1959 ACTTCGGTTTAGGCTGGCTGGTCCTCAGGAATCAGGCGTTGAAAGTGTACGTTCCATCAT 2018
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1984 ACTTTGGTTTAGGCTGGCTAGTCCTCAGGAATCAGGCGTTGAAAGTGTACGTTCCATCAT 2043
Query 2019 ACGAGAGCTATGGAAGAATGTGGCCGCATATTCACCAGCGGATACTAGCAGCGTTGTTTC 2078
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2044 ACGAGAGCTATGGAAGAATGTGGCCGCATATTCACCAGCGCATACTAGCAGCGTTGTTTC 2103
Query 2079 TATTCCAAGTGGTAATGTTTGGCTACTTAGGAGCCAAGACATTCTTCTACACGGCCCTCG 2138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2104 TATTCCAAGTGGTAATGTTTGGCTACTTAGGAGCCAAGACATTCTTCTACACGGCCCTTG 2163
Query 2139 TGATCCCTCTCATCATCACCTCTCTCATCTTCGGTTACGTGTGCCGCCAGAAATTCTACG 2198
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 2164 TGATCCCTCTCATTATCACCTCTCTCATCTTCGGATATGTGTGCCGCCAGAAATTCTACG 2223
Query 2199 GAGGGTTCAAACACACAGCTCTGGAGGTGGCTTGCCGTGAGCTGAAGCAGAGTCCGGACC 2258
|||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 2224 GAGGGTTCGAACACACAGCTCTCGAGGTAGCTTGCCGTGAGCTGAAGCAGAGTCCAGACC 2283
Query 2259 TCGAGGAGATTTTCAGAGCATACATTCCGCATAGCTTGAGCTCTCACAAAGCAGAAGAAC 2318
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2284 TAGAGGAGATTTTCAGAGCATACATTCCGCATAGCTTGAGCTCTCACAAACCAGAAGAAC 2343
Query 2319 ACGAGTTCAAAGGCGCAATGTCTCGTTATCAAGATTTCAATGCAATAGGAGGCGTTTAAA 2378
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 2344 ACGAGTTCAAAGGCGCAATGTCTCGTTATCAAGATTTCAACGCAATAGCAGGCGTTTAAA 2403
Query 2379 GTTTGAATCCAATCCC-AA-TTATCTCATAGAtttgttttgttggttttttagaagctgt 2436
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |
Sbjct 2404 ATTTGAATCCAATCCCCAAATTATCTCATAGATTTGTTTTGCTGGTTTTTTAGAAGCTTT 2463
Query 2437 tattgttgtgtgtgtgaattttaaggtttgtttaGGATTCTTCTTTGTATGTGTTCT-TG 2495
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2464 TATTGTTATGTGTGTGAATTTTAGGGTTTGTTTAGGATTCTTCTTTGTATGTGTTCCATG 2523
Query 2496 G--GTTGT---T-GTAACTTTGTAAGCTACTTTTAAATATCAACTTGATTTTTCATCAGT 2549
| ||||| | |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2524 GTTGTTGTAACTTGTAACTTTGTAAGCTACTTTTAAACATCAACTTGATTTTTCATCATT 2583
Query 2550 A-TGATTCTTCTACT 2563
| | |||||||||||
Sbjct 2584 AAT-ATTCTTCTACT 2597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127223367448
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5